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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Jul 18, 2025. (Total: 6743 publications)
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Records 1-30 (of 283 Records)
Query Trace: Smith E[original query]
Validation of Core and Whole-Genome Multi-Locus Sequence Typing Schemes for Shiga-Toxin-Producing E. coli (STEC) Outbreak Detection in a National Surveillance Network, PulseNet 2.0, USA
Leeper MM , Schroeder MN , Griswold T , Thakur M , Krishnan K , Katz LS , Hise KB , Williams GM , Stroika SG , Im SB , Lindsey RL , Smith PA , Huffman J , Kelley A , Cleland S , Collins AJ , Gautam S , Tyagi E , Park S , Carriço JA , Machado MP , Pouseele H , Michielsen D , Carleton HA .
Microorganisms 2025 13 (6)
Annual (2024) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)
Kuhn JH , Adkins S , Alkhovsky Альховский Сергей Владимирович SV , An 安雯霞 W , Avšič-Ĺ˝upanc T , Ayllón MA , Bačnik K , Bahl J , Balkema-Buschmann A , Ballinger MJ , Beer M , Bejerman N , Bergeron É , Biedenkopf N , Blair CD , Blasdell KR , Bradfute SB , Briese T , Brown K , Brown PA , Buchholz UJ , Buchmeier MJ , Bukreyev A , Burt F , Calisher CH , Calvelage S , Cao 曹孟籍 M , Casas I , Chabi-Jesus C , Chandran K , Charrel RN , Crane A , Cuypers LN , Bó ED , de la Torre JC , de Souza WM , de Swart RL , Debat HJ , Dheilly NM , Di Paola N , Di Serio F , Dietzgen RG , Digiaro M , Drexler JF , Duprex WP , Dürrwald R , Easton AJ , Elbeaino T , Ergünay K , Eshak MIY , Feng 冯国忠 G , Firth AE , Fooks AR , Formenty PBH , Freitas-Astúa J , Freuling CM , Gadd T , Gago-Zachert S , García ML , García-Sastre A , Garrison AR , Goldberg TL , Gonzalez JJ , Goüy de Bellocq J , Griffiths A , Groschup MH , Gryseels S , Gutiérrez-Aguirre I , Günther S , Hammond J , Hepojoki J , Horie 堀江真行 M , Hume AJ , Hyndman TH , Höper D , Jiāng 姜道宏 D , Junglen S , Klempa B , Klingström J , Kondō 近藤秀樹 H , Koonin EV , Krupovic M , Kubota 久保田健嗣 K , Kurath G , Kutnjak D , Laenen L , Lambert AJ , Lee B , Li 李呈宇 C , Lǐ 李建荣 J , Li 李俊敏 JM , Lukashevich IS , Maes P , Marklewitz M , Marshall SH , Marzano SL , McCauley JW , Mehle N , Mirazimi A , Morikawa 守川俊幸 T , Mühlberger E , Müller T , Naidu R , Natsuaki 夏秋知英 T , Navarro B , Navarro JA , Neriya 煉谷裕太朗 Y , Netesov Нетёсов Сергей Викторович SV , Nicoloso VM , Neumann G , Nokireki T , Nowotny N , Nunes MRT , Ochoa-Corona FM , Palacios G , Pallás V , Papa Άννα ΠαπÎŹ A , Paraskevopoulou ΣοφÎŻα Παρασκευοπούλου S , Parrish CR , Pauvolid-Corrêa A , Pecman A , Pérez DR , Pfaff F , Plemper RK , Postler TS , Radoshitzky SR , Ramos-González PL , Ravnikar M , Resende RO , Reuter G , Reyes CA , Rivarez MPS , Romanowski V , Rubbenstroth D , Rubino L , Runstadler JA , Ruiz-Padilla A , Sabanadzovic S , Salvato MS , Sasaya 笹谷孝英 IT , Schmaljohn CS , Schmidt-Posthaus H , Schwemmle M , Seljak G , Seuberlich T , Shi 施莽 M , Shimomoto 下元祥史 Y , Simmonds P , Sironi M , Smith DB , Smither S , Song 송진원 JW , Spann KM , Spengler JR , Stenglein MD , Takada 高田礼人 A , Takemura C , Tammiranta N , Tesh RB , Thornburg NJ , Tischler ND , Tomitaka 冨髙保弘 Y , Tomonaga 朝長啓造 K , Tordo N , Turina M , Tzanetakis ΙωÎŹννης Ε ΤζανετÎŹκης IE , Vaira AM , van den Hoogen B , Vanmechelen B , Vasilakis ΝÎŻκος ΒασιλÎŹκης N , Verbeek M , von Bargen S , Vučurović A , Wada 和田治郎 J , Wahl V , Walker PJ , Wang 王飞 F , Whitfield AE , Williams JV , Wolf YI , Yanagisawa 栁枤広厣 H , Yang 杨彩霞 C , Ye 叶恭银 G , Yu 于美春 MC , Zerbini FM , Zhang S , Økland AL , Hughes HR .
J Gen Virol 2025 106 (6)
High-dose isoniazid for TB with low-to-moderate isoniazid resistance after 1 week of treatment
Ranganathan UD , Smith-Jeffcoat SE , Balaji S , Devika K , Nair D , Devaleenal Daniel B , Srinivasan R , Baskaran M , RaviKumar D , Sangamithirai D , Radhika G , Mangalambal G , Lavanya J , Maheswaran K , Kumar S , Sridhar R , Tripathy S , Swaminathan S , Eisenach KD , Cegielski JP .
JAC Antimicrob Resist 2025 7 (3) dlaf072
Establishment of epidemiological cutoff values for Fonsecaea pedrosoi, the primary etiologic agent of chromoblastomycosis, and eight antifungal medications
Smith DJ , Melhem MSC , Dirven J , de Azevedo CMPeS , Marques SG , Jacomel Favoreto de Souza Lima B , Vicente VA , Teixeira Sousa Md G , Venturini J , Wiederhold NP , Seyedmousavi A , Dufresne PJ , de Hoog S , Lockhart SR , Hagen F , Santos DWdCL .
J Clin Microbiol 2025 63 (5) e0190324 type
Genomic Characterization of Escherichia coli O157:H7 Associated with Multiple Sources, United States
Wirth JS , Leeper MM , Smith PA , Vasser M , Katz LS , Vidyaprakash E , Carleton HA , Chen JC .
Emerg Infect Dis 2025 31 (13) 109-116
A multi-provincial outbreak of Salmonella Newport infections associated with red onions: A report of the largest Salmonella outbreak in Canada in over 20 years - Corrigendum
Denich L , Cheng JM , Smith CR , Taylor M , Atkinson R , Boyd E , Chui L , Honish L , Isaac L , Kearney A , Liang JJ , Mah V , Manore AJW , McCormic ZD , Misfeldt C , Nadon C , Patel K , Sharma D , Todd A , Hexemer A .
Epidemiol Infect 2024 152 e163 type
In depth sequencing of a serially sampled household cohort reveals the within-host dynamics of Omicron SARS-CoV-2 and rare selection of novel spike variants
Bendall EE , Dimcheff D , Papalambros L , Fitzsimmons WJ , Zhu Y , Schmitz J , Halasa N , Chappell J , Martin ET , Biddle JE , Smith-Jeffcoat SE , Rolfes MA , Mellis A , Talbot HK , Grijalva C , Lauring AS .
PLoS Pathog 2025 21 (4) e1013134
Evaluation of the 2022 West Nile virus forecasting challenge, USA
Harp RD , Holcomb KM , Retkute R , Prusokiene A , Prusokas A , Ertem Z , Ajelli M , Kummer AG , Litvinova M , Merler S , Piontti APY , Poletti P , Vespignani A , Wilke ABB , Zardini A , Smith KH , Armstrong P , DeFelice N , Keyel A , Shepard J , Smith R , Tyre A , Humphreys J , Cohnstaedt LW , Hosseini S , Scoglio C , Gorris ME , Barnard M , Moser SK , Spencer JA , McCarter MSJ , Lee C , Nolan MS , Barker CM , Staples JE , Nett RJ , Johansson MA .
Parasit Vectors 2025 18 (1) 152
Virus species names have been standardized; virus names remain unchanged
Zerbini FM , Simmonds P , Adriaenssens EM , Lefkowitz EJ , Oksanen HM , Alfenas-Zerbini P , Aylward FO , Freitas-Astúa J , Hughes HR , Łobocka M , Krupovic M , Kuhn JH , Mushegian A , Penzes JJ , Reyes A , Robertson DL , Roux S , Rubino L , Sabanadzovic S , Smith DB , Suzuki N , Turner D , Van Doorslaer K , Varsani A .
mSphere 2025 e0002025
Metagenomic Identification of Fusarium solani Strain as Cause of US Fungal Meningitis Outbreak Associated with Surgical Procedures in Mexico, 2023
Chiu CY , Servellita V , de Lorenzi-Tognon M , Benoit P , Sumimoto N , Foresythe A , Cerqueira FM , Williams-Bouyer N , Ren P , Herrera LNS , Gaston DC , Sayyad L , Whitmer SL , Klena J , Vikram HR , Gold JAW , Gade L , Parnell L , Misas E , Chiller TM , Griffin IS , Basavaraju SV , Smith DJ , Litvintseva AP , Chow NA .
Emerg Infect Dis 2025 31 (5) type
Association of mRNA COVID-19 vaccination and reductions in Post-COVID Conditions following SARS-CoV-2 infection in a US prospective cohort of essential workers
Mak J , Khan S , Britton A , Rose S , Gwynn L , Ellingson KD , Meece J , Feldstein LR , Tyner H , Edwards LJ , Thiese MS , Naleway A , Gaglani M , Solle N , Burgess JL , Lamberte JM , Shea M , Hunt-Smith T , Caban-Martinez A , Porter C , Wiegand R , Rai R , Hegmann KT , Hollister J , Fowlkes A , Wesley M , Philips AL , Rivers P , Bloodworth R , Newes-Adeyi G , Olsho LEW , Yoon SK , Saydah S , Lutrick K .
J Infect Dis 2025 231 (3) 665-676 type
Extended-spectrum beta-lactamase shigella sonnei cluster among men who have sex with men in Chicago, Illinois-July-October 2022
Faherty EAG , Kling K , Barbian HJ , Qi C , Altman S , Dhiman VK , Teran R , Anderson K , Yuce D , Smith S , Richardson M , Vogelzang K , Ghinai I , Ruestow P , Heimler I , Menon A , Francois Watkins LK , Logan N , Kim DY , Pacilli M , Kerins J , Black S .
J Infect Dis 2025 231 (3) 692-695 type
Characterization of insecticide resistance mechanisms in the Anopheles gambiae population of Sierra Leone
Opondo KO , Alyko E , Smith S , Levine R , Donnelly J , Hughes T , Schnabel D , Jose R , Jalloh A , Lolleh U , Conteh S , Iyikirenga L , Jacob D , Mokuena M , Yamba F , Yihdego Y .
Malar J 2025 24 (1) 80 type
Household Transmission and Genomic Diversity of Respiratory Syncytial Virus (RSV) in the United States, 2022-2023
Cox SN , Roychoudhury P , Frivold C , Acker Z , Babu TM , Boisvert CL , Carone M , Ehmen B , Englund JA , Feldstein LR , Gamboa L , Grindstaff S , Grioni HM , Han PD , Hoffman KL , Kim HG , Kuntz JL , Lo NK , Lockwood CM , McCaffrey K , Mularski RA , Hatchie TL , Reich SL , Schmidt MA , Smith N , Starita LM , Varga A , Yetz N , Naleway AL , Weil AA , Chu HY .
Clin Infect Dis 2025 type
Ongoing symptoms after acute SARS-CoV-2 or influenza infection in a case-ascertained household transmission study: 7 US Sites, 2021-2023
Bullock A , Dalton AF , Stockwell MS , McLaren SH , Sano E , Nguyen HQ , Rao S , Asturias E , Lutrick K , Ellingson KD , Maldonado Y , Mellis AM , Smith-Jeffcoat SE , Grijalva CG , Talbot HK , Rolfes MAR , Biddle JE , Zhu Y , Ledezma K , Pryor K , Valdez de Romero A , Vargas C , Petrie JG , Floris-Moore M , Bowman N .
Clin Infect Dis 2025 type
Zika virus: advancing a priority research agenda for preparedness and response
Lackritz EM , Ng LC , Marques ETA , Rabe IB , Bourne N , Staples JE , Méndez-Rico JA , Harris E , Brault AC , Ko AI , Beasley DWC , Leighton T , Wilder-Smith A , Ostrowsky JT , Mehr AJ , Ulrich AK , Velayudhan R , Golding JP , Fay PC , Cehovin A , Moua NM , Moore KA , Osterholm MT , Barrett ADT .
Lancet Infect Dis 2025 type
SARS-CoV-2-specific antibodies in pediatric solid organ transplant recipients: Benefits of additional vaccine doses
Adler AL , Waghmare A , Smith J , Kelton M , Dickerson JA , Reed JC , Greninger AL , Kehoe L , Fairlie T , Hagen MB , Midgley CM , Lacombe K , Englund JA .
Pediatr Transplant 2025 29 (2) e70050 type
Elevating larval source management as a key strategy for controlling malaria and other vector-borne diseases in Africa
Okumu F , Moore SJ , Selvaraj P , Yafin AH , Juma EO , Shirima GG , Majambere S , Hardy A , Knols BGJ , Msugupakulya BJ , Finda M , Kahamba N , Thomsen E , Ahmed A , Zohdy S , Chaki P , DeChant P , Fornace K , Govella N , Gowelo S , Hakizimana E , Hamainza B , Ijumba JN , Jany W , Kafy HT , Kaindoa EW , Kariuki L , Kiware S , Kweka EJ , Lobo NF , Marrenjo D , Matoke-Muhia D , Mbogo C , McCann RS , Monroe A , Ndenga BA , Ngowo HS , Ochomo E , Opiyo M , Reithinger R , Sikaala CH , Tatarsky A , Takudzwa D , Trujillano F , Sherrard-Smith E .
Parasit Vectors 2025 18 (1) 45 type
Estimating the generation time for influenza transmission using household data in the United States
Chan LYH , Morris SE , Stockwell MS , Bowman NM , Asturias E , Rao S , Lutrick K , Ellingson KD , Nguyen HQ , Maldonado Y , McLaren SH , Sano E , Biddle JE , Smith-Jeffcoat SE , Biggerstaff M , Rolfes MA , Talbot HK , Grijalva CG , Borchering RK , Mellis AM .
Epidemics 2025 50 100815 type
Phenotypic and genotypic characterization of Mycobacterium tuberculosis pyrazinamide resistance-India, 2018-2020
Tamilzhalagan S , Justin ES , Selvaraj A , Venkateswaran K , Sivakumar AK , Chittibabu S , McLaughlin HP , Moonan PK , Smith JP , Suba S , Sathya Narayanan MK , Ho CS , Kumar N , Tripathy SP , Shanmugam SK , Hall-Eidson PJ , Ranganathan UD .
Front Microbiol 2024 15 1515627 type
A unified approach to health data exchange: A Report From the US DHHS
Abbasi AB , Layden J , Gordon W , Gregurick S , DeLew N , Grossman J , Bierman AS , Monarez S , Curtis LH , Viall AH , Rocca M , Rivera DR , Marston H , Mugge A , Smith SR , Bent K , Macrae J , Sheehy A , Wegrzyn RD , Valdez RB , Johnson C , Bush L , Blum J , Cohen MK , Bertagnolli MM , Califf RM , Tripathi M .
Jama 2025
Effectiveness of mRNA COVID-19 vaccines and hybrid immunity in preventing SARS-CoV-2 infection and symptomatic COVID-19 among adults in the United States
Feldstein LR , Ruffin J , Wiegand RE , Borkowf CB , James-Gist J , Babu TM , Briggs-Hagen M , Chappell J , Chu HY , Englund JA , Kuntz JL , Lauring AS , Lo N , Carone M , Lockwood C , Martin ET , Midgley CM , Monto AS , Naleway AL , Ogilvie T , Saydah S , Schmidt MA , Schmitz JE , Smith N , Sohn I , Starita L , Talbot HK , Weil AA , Grijalva CG .
J Infect Dis 2025
Genome characterization of a simian foamy virus from a human bitten by an African green monkey
Shankar A , Smith JM , Switzer WM .
Microbiol Resour Announc 2024 e0083224 type
Spatiotemporal evolution and transmission dynamics of Alpha and Delta SARS-CoV-2 variants contributing to sequential outbreaks in Cambodia during 2021
Su YCF , Zeller MA , Ou TP , Ma J , Pum L , Zhang R , Rath S , Heang V , Kol S , Lim R , Chea KL , Khun L , Heng L , Krang S , Raftery P , Kinzer MH , Ieng V , Kab V , Patel S , Sar B , Horm VS , Yann S , Auerswald H , Siegers JY , Troupin C , Boukli N , Vandelannoote K , Wong FY , Ng GGK , Chan M , Sorn S , Sengdoeurn Y , Heng S , Darapheak C , Savuth C , Khalakdina A , Ly S , Baril L , Spiegel A , Duong V , Ly S , Smith GJD , Karlsson EA .
Commun Med (Lond) 2024 4 (1) 252 type
Bioluminescence imaging to study recombinant orthopoxvirus infection in animal models
Kling C , Smith TG , Baird N , Hutson CL .
Methods Mol Biol 2025 2860 175-189
Effectiveness of bivalent mrna vaccines in preventing symptomatic SARS-CoV-2 infection-increasing community access to testing program, United States, January-September 2023
Ciesla AA , Mak J , Roper LE , Fleming-Dutra KE , Smith ZR , Wiegand RE , Britton A , Miller J , Link-Gelles R .
Influenza Other Respir Viruses 2024 18 (11) e70038 type
Changes to virus taxonomy and the ICTV statutes ratified by the International Committee on Taxonomy of Viruses (2024)
Simmonds P , Adriaenssens EM , Lefkowitz EJ , Oksanen HM , Siddell SG , Zerbini FM , Alfenas-Zerbini P , Aylward FO , Dempsey DM , Dutilh BE , Freitas-Astúa J , García ML , Hendrickson RC , Hughes HR , Junglen S , Krupovic M , Kuhn JH , Lambert AJ , Łobocka M , Mushegian AR , Penzes J , Muñoz AR , Robertson DL , Roux S , Rubino L , Sabanadzovic S , Smith DB , Suzuki N , Turner D , Van Doorslaer K , Vandamme AM , Varsani A .
Arch Virol 2024 169 (11) 236
Notes from the field: Trichophyton mentagrophytes genotype VII - New York City, April-July 2024
Zucker J , Caplan AS , Gunaratne SH , Gallitano SM , Zampella JG , Otto C , Sally R , Chaturvedi S , O'Brien B , Todd GC , Anand P , Quilter LAS , Smith DJ , Chiller T , Lockhart SR , Lyman M , Pathela P , Gold JAW .
MMWR Morb Mortal Wkly Rep 2024 73 (43) 985-988
Genomic surveillance for SARS-CoV-2 variants: Circulation of Omicron XBB and JN.1 lineages - United States, May 2023-September 2024
Ma KC , Castro J , Lambrou AS , Rose EB , Cook PW , Batra D , Cubenas C , Hughes LJ , MacCannell DR , Mandal P , Mittal N , Sheth M , Smith C , Winn A , Hall AJ , Wentworth DE , Silk BJ , Thornburg NJ , Paden CR .
MMWR Morb Mortal Wkly Rep 2024 73 (42) 938-945 type
Locally acquired (autochthonous) mosquito-transmitted plasmodium vivax malaria - Saline County, Arkansas, September 2023
Courtney AP , Boyanton BL Jr , Strebeck PV , Blount K , Ledford S , Ridpath AD , Mace KE , Smith C , Garner K , Waters C , Cima MJ , Patil N , McElroy PD , Raphael BH , Sapp SGH , Qvarnstrom Y , Lenhart A , Sutcliffe A , Dulski TM , Rothfeldt L .
MMWR Morb Mortal Wkly Rep 2024 73 (42) 646-649 type
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