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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Sep 25, 2023. (Total: 4416 publications since 2011)
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Records 1-30 (of 60 Records)
Query Trace: Silva H[original query]
Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes
Carey ME , Dyson ZA , Ingle DJ , Amir A , Aworh MK , Chattaway MA , Chew KL , Crump JA , Feasey NA , Howden BP , Keddy KH , Maes M , Parry CM , Van Puyvelde S , Webb HE , Afolayan AO , Alexander AP , Anandan S , Andrews JR , Ashton PM , Basnyat B , Bavdekar A , Bogoch II , Clemens JD , da Silva KE , De A , de Ligt J , Diaz Guevara PL , Dolecek C , Dutta S , Ehlers MM , Francois Watkins L , Garrett DO , Godbole G , Gordon MA , Greenhill AR , Griffin C , Gupta M , Hendriksen RS , Heyderman RS , Hooda Y , Hormazabal JC , Ikhimiukor OO , Iqbal J , Jacob JJ , Jenkins C , Jinka DR , John J , Kang G , Kanteh A , Kapil A , Karkey A , Kariuki S , Kingsley RA , Koshy RM , Lauer AC , Levine MM , Lingegowda RK , Luby SP , Mackenzie GA , Mashe T , Msefula C , Mutreja A , Nagaraj G , Nagaraj S , Nair S , Naseri TK , Nimarota-Brown S , Njamkepo E , Okeke IN , Perumal SPB , Pollard AJ , Pragasam AK , Qadri F , Qamar FN , Rahman SIA , Rambocus SD , Rasko DA , Ray P , Robins-Browne R , Rongsen-Chandola T , Rutanga JP , Saha SK , Saha S , Saigal K , Sajib MSI , Seidman JC , Shakya J , Shamanna V , Shastri J , Shrestha R , Sia S , Sikorski MJ , Singh A , Smith AM , Tagg KA , Tamrakar D , Tanmoy AM , Thomas M , Thomas MS , Thomsen R , Thomson NR , Tupua S , Vaidya K , Valcanis M , Veeraraghavan B , Weill FX , Wright J , Dougan G , Argimn S , Keane JA , Aanensen DM , Baker S , Holt KE .
Elife 2023 12
Population structure and antimicrobial resistance patterns of Salmonella Typhi and Paratyphi A amid a phased municipal vaccination campaign in Navi Mumbai, India
da Silva KE , Date K , Hirani N , LeBoa C , Jayaprasad N , Borhade P , Warren J , Shimpi R , Hoffman SA , Mikoleit M , Bhatnagar P , Cao Y , Haldar P , Harvey P , Zhang C , Daruwalla S , Dharmapalan D , Gavhane J , Joshi S , Rai R , Rathod V , Shetty K , Warrier DS , Yadav S , Chakraborty D , Bahl S , Katkar A , Kunwar A , Yewale V , Dutta S , Luby SP , Andrews JR .
mBio 2023 e0117923
Targeted and whole-genome sequencing reveal a north-south divide in P. falciparum drug resistance markers and genetic structure in Mozambique
daSilva C , Boene S , Datta D , Rovira-Vallbona E , Aranda-Daz A , Cister P , Hathaway N , Tessema S , Chidimatembue A , Matambisso G , Nhama A , Macete E , Pujol A , Nhamussua L , Galatas B , Guinovart C , Enosse S , DeCarvalho E , Rogier E , Plucinski MM , Colborn J , Zulliger R , Saifodine A , Alonso PL , Candrinho B , Greenhouse B , Aide P , Saute F , Mayor A .
Commun Biol 2023 6 (1) 619
Interpreting biomonitoring data: Introducing the international human biomonitoring (i-HBM) working group's health-based guidance value (HB2GV) dashboard.
Nakayama SF , St-Amand A , Pollock T , Apel P , Bamai YA , Barr DB , Bessems J , Calafat AM , Castao A , Covaci A , Duca RC , Faure S , Galea KS , Hays S , Hopf NB , Ito Y , Jeddi MZ , Kolossa-Gehring M , Kumar E , LaKind JS , Lpez ME , Louro H , Macey K , Makris KC , Melnyk L , Murawski A , Naiman J , Nassif J , Noisel N , Poddalgoda D , Quirs-Alcal L , Rafiee A , Rambaud L , Silva MJ , Ueyama J , Verner MA , Waras MN , Werry K .
Int J Hyg Environ Health 2022 247 114046
Bovine Polyomavirus-1 (Epsilonpolyomavirus bovis): An Emerging Fetal Pathogen of Cattle That Causes Renal Lesions Resembling Polyomavirus-Associated Nephropathy of Humans.
Giannitti F , daSilvaSilveira C , Bullock H , Bern M , Fernndez-Ciganda S , Bentez-Galeano MJ , Rodrguez-Osorio N , Silva-Flannery L , Perdomo Y , Cabrera A , Puentes R , Colina R , Ritter JM , Castells M .
Viruses 2022 14 (9)
Factors Associated With Severe Illness in Patients Aged <21 Years Hospitalized for COVID-19.
Choudhary R , Webber BJ , Womack LS , Dupont HK , Chiu SK , Wanga V , Gerdes ME , Hsu S , Shi DS , Dulski TM , Idubor OI , Wendel AM , Agathis NT , Anderson K , Boyles T , Click ES , Silva JD , Evans ME , Gold JAW , Haston JC , Logan P , Maloney SA , Martinez M , Natarajan P , Spicer KB , Swancutt M , Stevens VA , Rogers-Brown J , Chandra G , Light M , Barr FE , Snowden J , Kociolek LK , McHugh M , Wessel DL , Simpson JN , Gorman KC , Breslin KA , DeBiasi RL , Thompson A , Kline MW , Boom JA , Singh IR , Dowlin M , Wietecha M , Schweitzer B , Morris SB , Koumans EH , Ko JY , Siegel DA , Kimball AA .
Hosp Pediatr 2022 12 (9) 760-783 type
Model-based estimation of transmissibility and reinfection of SARS-CoV-2 P.1 variant.
Coutinho Renato Mendes, Marquitti Flavia Maria Darcie, Ferreira Leonardo Souto, Borges Marcelo Eduardo, da Silva Rafael Lopes Paixão, Canton Otavio, Portella Tatiana P, Poloni Silas, Franco Caroline, Plucinski Mateusz M, Lessa Fernanda C, da Silva Antônio Augusto Moura, Kraenkel Roberto Andre, de Sousa Mascena Veras Maria Amélia, Prado Paulo Inácio. Communications medicine 2022 148 .
Communications medicine 2022 148 type
Drug resistance and use of long-acting ART.
daSilva J , Siedner M , McCluskey S , Chandiwana N , Venter F , Raizes E .
Lancet HIV 2022 9 (6) e374-e375
Concurrent outbreaks of circulating vaccine-derived poliovirus types 1 and 2 affecting the Republic of the Philippines and Malaysia, 2019-2021.
Snider CJ , Boualam L , Tallis G , Takashima Y , Abeyasinghe R , Lo YR , Grabovac V , Avagyan T , Aslam SK , Eltayeb AO , Aung KD , Wang X , Shrestha A , Ante-Orozco C , Silva MWT , Lapastora-Sucaldito N , Apostol LNG , Jikal MBH , Miraj W , Lodhi F , Kim HJ , Rusli N , Thorley BR , Kaye MB , Nishimura Y , Arita M , Sani JAM , Rundi C , Feldon K .
Vaccine 2022 41 Suppl 1 A58-A69
Active surveillance and early detection of community transmission of SARS-CoV-2 Mu variant (B.1.621) in the Brazilian Amazon.
Oliveira GS , Silva-Flannery L , daSilva JF , Siza C , Esteves RJ , Marston BJ , Morgan J , Plucinski M , Roca TP , Silva Ampd , Pereira SS , Salcedo JMV , Pereira D , Naveca FG , VieiraDall'Acqua DS .
J Med Virol 2022 94 (7) 3410-3415 type
VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data.
Wagner DD , Marine RL , Ramos E , Ng TFF , Castro CJ , Okomo-Adhiambo M , Harvey K , Doho G , Kelly R , Jain Y , Tatusov RL , Silva H , Rota PA , Khan AN , Oberste MS .
Microbiol Spectr 2022 10 (2) e0256421 type
Delivery of Double-Stranded RNAs (dsRNAs) Produced by Escherichia coli HT115(DE3) for Nontransgenic RNAi-Based Insect Pest Management.
Taracena ML , GarciaCaffaro I , Paiva-Silva GO , Oliveira PL , Rendon PA , Dotson EM , Pennington PM .
Methods Mol Biol 2022 2360 279-294
Monitoring emerging HIV drug resistance in sub-Saharan Africa in the era of dolutegravir.
daSilva J , Pals S , Chang J , Hackett S , Godfrey C , Raizes E .
J Infect Dis 2021 225 (3) 364-366
CATMoS: Collaborative Acute Toxicity Modeling Suite.
Mansouri K , Karmaus AL , Fitzpatrick J , Patlewicz G , Pradeep P , Alberga D , Alepee N , Allen TEH , Allen D , Alves VM , Andrade CH , Auernhammer TR , Ballabio D , Bell S , Benfenati E , Bhattacharya S , Bastos JV , Boyd S , Brown JB , Capuzzi SJ , Chushak Y , Ciallella H , Clark AM , Consonni V , Daga PR , Ekins S , Farag S , Fedorov M , Fourches D , Gadaleta D , Gao F , Gearhart JM , Goh G , Goodman JM , Grisoni F , Grulke CM , Hartung T , Hirn M , Karpov P , Korotcov A , Lavado GJ , Lawless M , Li X , Luechtefeld T , Lunghini F , Mangiatordi GF , Marcou G , Marsh D , Martin T , Mauri A , Muratov EN , Myatt GJ , Nguyen DT , Nicolotti O , Note R , Pande P , Parks AK , Peryea T , Polash AH , Rallo R , Roncaglioni A , Rowlands C , Ruiz P , Russo DP , Sayed A , Sayre R , Sheils T , Siegel C , Silva AC , Simeonov A , Sosnin S , Southall N , Strickland J , Tang Y , Teppen B , Tetko IV , Thomas D , Tkachenko V , Todeschini R , Toma C , Tripodi I , Trisciuzzi D , Tropsha A , Varnek A , Vukovic K , Wang Z , Wang L , Waters KM , Wedlake AJ , Wijeyesakere SJ , Wilson D , Xiao Z , Yang H , Zahoranszky-Kohalmi G , Zakharov AV , Zhang FF , Zhang Z , Zhao T , Zhu H , Zorn KM , Casey W , Kleinstreuer NC .
Environ Health Perspect 2021 129 (4) 47013
Performance evaluation of fungal DNA PCR amplification from formalin-fixed paraffin-embedded tissue for diagnosis; experience of a tertiary reference laboratory.
Lysen C , Silva-Flannery L , Zaki SR , Gary JM , Lockhart SR .
Mycoses 2021 64 (6) 603-611
Web-Based Genome Analysis of Bacterial Meningitis Pathogens for Public Health Applications Using the Bacterial Meningitis Genomic Analysis Platform (BMGAP).
Buono SA , Kelly RJ , Topaz N , Retchless AC , Silva H , Chen A , Ramos E , Doho G , Khan AN , Okomo-Adhiambo MA , Hu F , Marasini D , Wang X .
Front Genet 2020 11 601870
Cross-protection by inactivated H5 pre-pandemic vaccine seed strains against diverse Goose/Guangdong lineage H5N1 highly pathogenic avian influenza viruses.
Criado MF , SESilvaM , Lee DH , deLimaSalge CA , Spackman E , Donis R , Wan XF , Swayne DE .
J Virol 2020 94 (24)
Predictors at admission of mechanical ventilation and death in an observational cohort of adults hospitalized with COVID-19.
Jackson BR , Gold JAW , Natarajan P , Rossow J , NeblettFanfair R , daSilva J , Wong KK , Browning SD , BamrahMorris S , Rogers-Brown J , Hernandez-Romieu AC , Szablewski CM , Oosmanally N , Tobin-D'Angelo M , Drenzek C , Murphy DJ , Hollberg J , Blum JM , Jansen R , Wright DW , SeweSll WM , Owens JD , Lefkove B , Brown FW , Burton DC , Uyeki TM , Bialek SR , Patel PR , Bruce BB .
Clin Infect Dis 2020 73 (11) e4141-e4151 type
High prevalence of Hepatitis C Virus infection among people who use crack cocaine in an important international drug trafficking route in Central-West Region Brazil.
Castro VOL , Kamili S , Forbi JC , Stabile AC , daSilva EF , doValleLeonedeOliveira SM , deCarvalho PRT , Puga MAM , Tanaka TSO , doLago BV , Ibanhes ML , Araujo A , Tejada-Strop A , Lin Y , Xia GL , Sue A , Teles SA , Motta-Castro ARC .
Infect Genet Evol 2020 85 104488
Systems genetics and systems biology analysis of paraquat neurotoxicity in BXD recombinant inbred mice.
Torres-Rojas C , Zhuang D , Jimenez-Carrion P , Silva I , O'Callaghan JP , Lu L , Zhao W , Mulligan MK , Williams RW , Jones BC .
Toxicol Sci 2020 176 (1) 137-146
Molecular typing of Cyclospora cayetanensis in produce and clinical samples using targeted enrichment of complete mitochondrial genomes and next-generation sequencing.
Cinar HN , Gopinath G , Murphy HR , Almeria S , Durigan M , Choi D , Jang A , Kim E , Kim R , Choi S , Lee J , Shin Y , Lee J , Qvarnstrom Y , Benedict TK , Bishop HS , daSilva A .
Parasit Vectors 2020 13 (1) 122
Meningococcal carriage in young adults six years after meningococcal C conjugate (MCC) vaccine catch-up campaign in Salvador, Brazil.
Ferreira VM , Ferreira IE , Chang HY , Nunes Ampb , Topaz N , Pimentel ER , Moura Arss , Ribeiro GS , Feitosa CA , Reis MG , Wang X , Campos LC .
Vaccine 2020 38 (14) 2995-3002
Zika Virus Surveillance at the Human-Animal Interface in West-Central Brazil, 2017-2018.
Pauvolid-Correa A , GoncalvesDias H , MarinaSiqueiraMaia L , Porfirio G , OliveiraMorgado T , Sabino-Santos G , HelenaSantaRita P , TeixeiraGomesBarreto W , CarvalhodeMacedo G , MarinhoTorres J , ArrudaGimenesNantes W , MartinsSantos F , OliveiradeAssis W , CastroRucco A , MamoruDosSantosYui R , BoscoVilelaCampos J , RodriguesLeandro ESilvaR , daSilvaFerreira R , AparecidodaSilvaNeves N , CharllesdeSouzaCosta M , RamosMartins L , MarquesdeSouza E , DosSantosCarvalho M , GoncalvesLima M , deCassiaGoncalvesAlves F , HumbertoGuimaraesRiquelme-Junior L , LuizBatistaFigueiro L , FernandesGomesdeSantana M , GustavoRodriguesOliveiraSantos L , SerraMedeiros S , LopesSeino L , HimeMiranda E , HenriqueRezendeLinhares J , deOliveiraSantos V , AlmeidadaSilva S , AraujoLucio K , SilvaGomes V , deAraujoOliveira A , DosSantosSilva J , deAlmeidaMarques W , SchaferMarques M , JuniorFrancadeBarros J , Campos L , Couto-Lima D , CoutinhoNetto C , Strussmann C , Panella N , Hannon E , CristinadeMacedo B , RamosdeAlmeida J , RamosRibeiro K , CarolinaBarrosdeCastro M , PrattaCampos L , PaulaRosaDosSantos A , MarinodeSouza I , deAssisBianchini M , HelenaRamiroCorrea S , OrdonesBaptistaLuz R , DosSantosVieira A , MariadeOliveiraPinto L , Azeredo E , TadeuMoraesFigueiredo L , AugustoFonsecaAlencar J , MariaBarbosadeLima S , MiragliaHerrera H , DezengriniShlessarenko R , BarretoDosSantos F , MariaBispodeFilippis A , Salyer S , Montgomery J , Komar N .
Viruses 2019 11 (12)
Development of a World Health Organization International Reference Panel for different genotypes of hepatitis E virus for nucleic acid amplification testing.
Baylis SA , Hanschmann KO , Matsubayashi K , Sakata H , Roque-Afonso AM , Kaiser M , Corman VM , Kamili S , Aggarwal R , Trehanpati N , Gartner T , Thomson EC , Davis CA , daSilvaFilipe A , Abdelrahman TT , Blumel J , Terao E .
J Clin Virol 2019 119 60-67
Multiplex TaqMan qPCR assay for specific identification of encapsulated Trichinella species prevalent in North America.
Almeida M , Bishop H , Nascimento FS , Mathison B , Bradbury RS , Silva AD .
Mem Inst Oswaldo Cruz 2018 113 (11) e180305
Field evaluation of a real time loop-mediated isothermal amplification assay (RealAmp) for malaria diagnosis in Cruzeiro do Sul, Acre, Brazil.
Viana GMR , Silva-Flannery L , LimaBarbosa DR , Lucchi N , doValle SCN , Farias S , Barbalho N , Marchesini P , Rossi JCN , Udhayakumar V , Povoa MM , deOliveira AM .
PLoS One 2018 13 (7) e0200492
Epidemiology and molecular characterization of Neisseria lactamica carried in 11-19 years old students in Salvador, Brazil.
Moura Arss , Kretz CB , Ferreira IE , Nunes Ampb , deFilippis I , deMoraes JC , Reis MG , McBride AJA , Wang X , Campos LC .
Int J Med Microbiol 2018 308 (4) 454-458
Efficacy of Artemether-Lumefantrine for Uncomplicated Plasmodium falciparum Malaria in Cruzeiro do Sul, Brazil, 2016.
Itoh Megumi, Negreiros do Valle Suiane, Farias Sâmela, Holanda de Souza Thayna Maria, Rachid Viana Giselle Maria, Lucchi Naomi, Chenet Stella, Marchesini Paola, Póvoa Marinete, Faria E Silva Santelli Ana Carolina, Macedo de Oliveira Alexandre. The American journal of tropical medicine and hygiene 2017 Nov .
The American journal of tropical medicine and hygiene 2017 Nov
Molecular detection of Cyclospora cayetanensis in human stool specimens using UNEX-based DNA extraction and real-time PCR.
Qvarnstrom Yvonne, Benedict Theresa, Marcet Paula L, Wiegand Ryan E, Herwaldt Barbara L, da Silva Alexandre J.Parasitology 2017 Nov 1-6 .
Parasitology 2017 Nov 1-6
Interlaboratory validation of an improved method for detection of Cyclospora cayetanensis in produce using a real-time PCR assay.
Murphy Helen R, Cinar Hediye Nese, Gopinath Gopal, Noe Kathy E, Chatman Lacresha D, Miranda Nancy E, Wetherington June H, Neal-McKinney Jason, Pires Gabrielle S, Sachs Elizabeth, Stanya Kristopher J, Johnson Cynthia L, Nascimento Fernanda S, Santin Monica, Molokin Aleksey, Samadpour Mansour, Janagama Harish, Kahler Amy, Miller Candace, da Silva Alexandre J. Food microbiology 2018 Feb 69170-178 .
Food microbiology 2018 Feb 69170-178
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