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Public Health Genomics and Precision Health Knowledge Base (v10.0)
PHGKB
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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)
CDC-Authored Genomics and Precision Health Publications Database
Last data update: Dec 02, 2024
. (Total: 6432 publications)
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Year
Journal
Records 1-19 (of 19 Records)
Query Trace:
Silk BJ[original query]
Genomic surveillance for SARS-CoV-2 variants: Circulation of Omicron XBB and JN.1 lineages - United States, May 2023-September 2024
Ma KC
,
Castro J
,
Lambrou AS
,
Rose EB
,
Cook PW
,
Batra D
,
Cubenas C
,
Hughes LJ
,
MacCannell DR
,
Mandal P
,
Mittal N
,
Sheth M
,
Smith C
,
Winn A
,
Hall AJ
,
Wentworth DE
,
Silk BJ
,
Thornburg NJ
,
Paden CR
.
MMWR Morb Mortal Wkly Rep 2024 73 (42) 938-945
Characterizing the etiology of recurrent tuberculosis using whole genome sequencing-Alaska, USA, 2008-2020
Springer YP
,
Tompkins ML ,
Newell K
,
Jones M
,
Burns S
,
Chandler B ,
Cowan LS
,
Kammerer JS
,
Posey JE
,
Raz KM
,
Rothoff M ,
Silk BJ
,
Vergnetti YL , McLaughlin JB ,
Talarico S
.
J Infect Dis 2024
Early estimates of updated 2023-2024 (monovalent XBB.1.5) COVID-19 vaccine effectiveness against symptomatic SARS-CoV-2 infection attributable to co-circulating Omicron variants among immunocompetent adults - increasing community access to testing program, United States, September 2023-January 2024
Link-Gelles R
,
Ciesla AA
,
Mak J
,
Miller JD
,
Silk BJ
,
Lambrou AS
,
Paden CR
,
Shirk P
,
Britton A
,
Smith ZR
,
Fleming-Dutra KE
.
MMWR Morb Mortal Wkly Rep 2024 73 (4) 77-83
Trends in laboratory-confirmed SARS-CoV-2 reinfections and associated hospitalizations and deaths among adults aged 18 years - 18 U.S. Jurisdictions, September 2021-December 2022
Ma KC
,
Dorabawila V , León TM , Henry H ,
Johnson AG
,
Rosenberg E , Mansfield JA ,
Midgley CM
,
Plumb ID
,
Aiken J , Khanani QA , Auche S , Bayoumi NS , Bennett SA , Bernu C , Chang C , Como-Sabetti KJ , Cueto K , Cunningham S , Eddy M , Falender RA , Fleischauer A , Frank DM , Harrington P , Hoskins M , Howsare A , Ingaiza LM , Islam AS , Jensen SA ,
Jones JM
,
Kambach G , Kanishka F , Levin Y , Masarik JF 3rd , Meyer SD , Milroy L , Morris KJ , Olmstead J , Olsen NS , Omoike E , Patel K , Pettinger A , Pike MA , Reed IG , Slocum E , Sutton M , Tilakaratne BP , Vest H , Vostok J , Wang JS , Watson-Lewis L , Wienkes HN ,
Hagen MB
,
Silk BJ
,
Scobie HM
.
MMWR Morb Mortal Wkly Rep 2023 72 (25) 683-689
Genomic surveillance for SARS-CoV-2 variants: Circulation of Omicron lineages - United States, January 2022-May 2023
Ma KC
,
Shirk P
,
Lambrou AS
,
Hassell N
,
Zheng XY
,
Payne AB
,
Ali AR
,
Batra D
,
Caravas J
,
Chau R
,
Cook PW
,
Howard D
,
Kovacs NA
,
Lacek KA
,
Lee JS
,
MacCannell DR
,
Malapati L
,
Mathew S
,
Mittal N
,
Nagilla RR
,
Parikh R
,
Paul P
,
Rambo-Martin BL
,
Shepard SS
,
Sheth M
,
Wentworth DE
,
Winn A
,
Hall AJ
,
Silk BJ
,
Thornburg N
,
Kondor R
,
Scobie HM
,
Paden CR
.
MMWR Morb Mortal Wkly Rep 2023 72 (24) 651-656
Spike Gene Target Amplification in a Diagnostic Assay as a Marker for Public Health Monitoring of Emerging SARS-CoV-2 Variants - United States, November 2021-January 2023.
Scobie HM
,
Ali AR
,
Shirk P
,
Smith ZR
,
Paul P
,
Paden CR
,
Hassell N
,
Zheng XY
,
Lambrou AS
,
Kondor R
,
MacCannell D
,
Thornburg NJ
,
Miller J
,
Wentworth D
,
Silk BJ
.
MMWR Morb Mortal Wkly Rep 2023 72 (5) 125-127
Molecular surveillance for large outbreaks of tuberculosis in the United States, 2014-2018.
Raz KM
,
Talarico S
,
Althomsons SP
,
Kammerer JS
,
Cowan LS
,
Haddad MB
,
McDaniel CJ
,
Wortham JM
,
France AM
,
Powell KM
,
Posey JE
,
Silk BJ
.
Tuberculosis (Edinb) 2022 136 102232
Tuberculosis Outbreaks in State Prisons, United States, 2011-2019.
Stewart RJ
,
Raz KM
,
Burns SP
,
Kammerer JS
,
Haddad MB
,
Silk BJ
,
Wortham JM
.
Am J Public Health 2022 112 (8) 1170-1179
Genomic Surveillance for SARS-CoV-2 Variants: Predominance of the Delta (B.1.617.2) and Omicron (B.1.1.529) Variants - United States, June 2021-January 2022.
Lambrou AS
,
Shirk P
,
Steele MK
,
Paul P
,
Paden CR
,
Cadwell B
,
Reese HE
,
Aoki Y
,
Hassell N
,
Caravas J
,
Kovacs NA
,
Gerhart JG ,
Ng HJ
,
Zheng XY ,
Beck A
,
Chau R
,
Cintron R
,
Cook PW
,
Gulvik CA
,
Howard D
,
Jang Y
,
Knipe K
,
Lacek KA
,
Moser KA ,
Paskey AC
,
Rambo-Martin BL
,
Nagilla RR ,
Rethchless AC
,
Schmerer MW
,
Seby S
,
Shephard SS
,
Stanton RA
,
Stark TJ
,
Uehara A
,
Unoarumhi Y
,
Bentz ML
,
Burhgin A
,
Burroughs M
,
Davis ML
,
Keller MW
,
Keong LM ,
Le SS
,
Lee JS
,
Madden Jr JC
,
Nobles S
,
Owouor DC
,
Padilla J
,
Sheth M
,
Wilson MM
,
Talarico S
,
Chen JC
,
Oberste MS
,
Batra D
,
McMullan LK
,
Halpin AL
,
Galloway SE
,
MacCannell DR
,
Kondor R
,
Barnes J
,
MacNeil A
,
Silk BJ
,
Dugan VG
,
Scobie HM
,
Wentworth DE
.
MMWR Morb Mortal Wkly Rep 2022 71 (6) 206-211
Model-based analysis of tuberculosis genotype clusters in the United States reveals high degree of heterogeneity in transmission, and state-level differences across California, Florida, New York, and Texas.
Shrestha S ,
Winglee K
,
Hill A
,
Shaw T , Smith J ,
Kammerer JS
,
Silk BJ
,
Marks S
,
Dowdy D .
Clin Infect Dis 2022 75 (8) 1433-1441
Mutation of Mycobacterium tuberculosis and Implications for Using Whole-Genome Sequencing for Investigating Recent Tuberculosis Transmission.
Nelson KN ,
Talarico S
,
Poonja S ,
McDaniel CJ
,
Cilnis M , Chang AH ,
Raz K
,
Noboa WS ,
Cowan L
,
Shaw T ,
Posey J
,
Silk BJ
.
Front Public Health 2021 9 790544
A Cluster-based Method to Quantify Individual Heterogeneity in Tuberculosis Transmission.
Smith JP , Gandhi NR ,
Silk BJ
,
Cohen T , Lopman B ,
Raz K
,
Winglee K
,
Kammerer S
,
Benkeser D , Kramer M ,
Hill AN
.
Epidemiology 2021 33 (2) 217-227
Logically Inferred Tuberculosis Transmission (LITT): A Data Integration Algorithm to Rank Potential Source Cases.
Winglee K
,
McDaniel CJ
,
Linde L ,
Kammerer S
,
Cilnis M ,
Raz KM
,
Noboa W
,
Knorr J ,
Cowan L
,
Reynolds S
,
Posey J
,
Sullivan Meissner J ,
Poonja S
,
Shaw T ,
Talarico S
,
Silk BJ
.
Front Public Health 2021 9 667337
Estimating and Evaluating Tuberculosis Incidence Rates Among People Experiencing Homelessness, United States, 2007-2016.
Self JL
,
McDaniel CJ
,
Bamrah Morris S
,
Silk BJ
.
Med Care 2021 59 S175-s181
Drivers of Tuberculosis Transmission.
Mathema B , Andrews JR , Cohen T ,
Borgdorff MW
,
Behr M , Glynn JR , Rustomjee R ,
Silk BJ
,
Wood R .
J Infect Dis 2017 216 S644-s653
Human tuberculosis caused by Mycobacterium bovis in the United States, 2006-2013.
Scott C
,
Cavanaugh JS
,
Pratt R
,
Silk BJ
,
LoBue P
,
Moonan PK
.
Clin Infect Dis 2016 63 (5) 594-601
Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation.
Jackson BR
,
Tarr C
,
Strain E , Jackson KA , Conrad A ,
Carleton H
,
Katz LS
,
Stroika S
,
Gould LH
,
Mody RK
,
Silk BJ
,
Beal J , Chen Y , Timme R , Doyle M , Fields A ,
Wise M
,
Tillman G , Defibaugh-Chavez S ,
Kucerova Z
,
Sabol A
,
Roache K
,
Trees E
,
Simmons M , Wasilenko J , Kubota K , Pouseele H , Klimke W ,
Besser J
,
Brown E , Allard M ,
Gerner-Smidt P
.
Clin Infect Dis 2016 63 (3) 380-6
Evolutionary Relationships of Outbreak-associated Listeria monocytogenes Strains of Serotypes 1/2a and 1/2b Determined by Whole Genome Sequencing.
Bergholz TM , den Bakker HC ,
Katz LS
,
Silk BJ
,
Jackson KA
,
Kucerova Z
,
Joseph LA
,
Turnsek M
,
Gladney LM
,
Halpin JL
,
Xavier K , Gossack J , Ward TJ ,
Frace M
,
Tarr CL
.
Appl Environ Microbiol 2015 82 (3) 928-38
Genomic characterization of Listeria monocytogenes strains involved in a multistate listeriosis outbreak associated with cantaloupe in US.
Laksanalamai P ,
Joseph LA
,
Silk BJ
,
Burall LS ,
Tarr CL
,
Gerner-Smidt P
,
Datta AR .
PLoS One 2012 7 (7) e42448
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Page last reviewed:
Feb 1, 2024
Content source:
Public Health Genomics Branch in the Division of Blood Disorders and Public Health Genomics
,
National Center on Birth Defects and Developmental Disabilities
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