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Public Health Genomics and Precision Health Knowledge Base (v10.0)
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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)
CDC-Authored Genomics and Precision Health Publications Database
Last data update: Sep 30, 2024
. (Total: 6327 publications)
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Year
Journal
Records 1-12 (of 12 Records)
Query Trace:
Shepard SS[original query]
Genetic drift and purifying selection shape within-host influenza A virus populations during natural swine infections
VanInsberghe D , McBride DS ,
DaSilva J
,
Stark TJ
,
Lau MSY ,
Shepard SS
,
Barnes JR
,
Bowman AS , Lowen AC , Koelle K .
PLoS Pathog 2024 20 (4) e1012131
Genomic surveillance for SARS-CoV-2 variants: Circulation of Omicron lineages - United States, January 2022-May 2023
Ma KC
,
Shirk P
,
Lambrou AS
,
Hassell N
,
Zheng XY
,
Payne AB
,
Ali AR
,
Batra D
,
Caravas J
,
Chau R
,
Cook PW
,
Howard D
,
Kovacs NA
,
Lacek KA
,
Lee JS
,
MacCannell DR
,
Malapati L
,
Mathew S
,
Mittal N
,
Nagilla RR
,
Parikh R
,
Paul P
,
Rambo-Martin BL
,
Shepard SS
,
Sheth M
,
Wentworth DE
,
Winn A
,
Hall AJ
,
Silk BJ
,
Thornburg N
,
Kondor R
,
Scobie HM
,
Paden CR
.
MMWR Morb Mortal Wkly Rep 2023 72 (24) 651-656
Author Correction: Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome.
Keller MW , Rambo-Martin BL , Wilson MM , Ridenour CA ,
Shepard SS
,
Stark TJ
,
Neuhaus EB
,
Dugan VG
,
Wentworth DE
,
Barnes JR
.
Sci Rep 2018 8 (1) 15746
SARS-CoV-2 Delta-Omicron Recombinant Viruses, United States.
Lacek KA
,
Rambo-Martin BL
,
Batra D
,
Zheng XY
,
Hassell N
,
Sakaguchi H , Peacock T , Groves N ,
Keller M
,
Wilson MM
,
Sheth M
,
Davis ML
,
Borroughs M
,
Gerhart J
,
Shepard SS
,
Cook PW
,
Lee J
,
Wentworth DE
,
Barnes JR
,
Kondor R
,
Paden CR
.
Emerg Infect Dis 2022 28 (7) 1442-1445
Novel and extendable genotyping system for human respiratory syncytial virus based on whole-genome sequence analysis.
Chen J , Qiu X , Avadhanula V ,
Shepard SS
,
Kim DK , Hixson J , Piedra PA , Bahl J .
Influenza Other Respir Viruses 2021 16 (3) 492-500
Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome.
Keller MW , Rambo-Martin BL , Wilson MM , Ridenour CA ,
Shepard SS
,
Stark TJ
,
Neuhaus EB
,
Dugan VG
,
Wentworth DE
,
Barnes JR
.
Sci Rep 2018 8 (1) 14408
Active Ebola Virus Replication and Heterogeneous Evolutionary Rates in EVD Survivors.
Whitmer SLM
,
Ladner JT , Wiley MR ,
Patel K
,
Dudas G , Rambaut A , Sahr F , Prieto K ,
Shepard SS
,
Carmody E ,
Knust B
,
Naidoo D , Deen G , Formenty P ,
Nichol ST
,
Palacios G ,
Stroher U
.
Cell Rep 2018 22 (5) 1159-1168
Shifting clade distribution, reassortment, and emergence of new subtypes of highly pathogenic avian influenza A(H5) viruses collected in Vietnamese poultry from 2012 to 2015.
Nguyen DT ,
Jang Y
,
Nguyen TD ,
Jones J
,
Shepard SS
,
Yang H
,
Gerloff N
,
Fabrizio T , Nguyen LV , Inui K ,
Yang G
,
Creanga A
,
Wang L
,
Mai DT ,
Thor S
,
Stevens J
,
To TL ,
Wentworth DE
,
Nguyen T , Pham DV , Bryant JE ,
Davis CT
.
J Virol 2016 91 (5)
Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler.
Shepard SS
,
Meno S
,
Bahl J , Wilson MM , Barnes J ,
Neuhaus E
.
BMC Genomics 2016 17 (1) 708
Preliminary Evaluation of the Effect of Investigational Ebola Virus Disease Treatments on Viral Genome Sequences.
Whitmer SL
,
Albarino C
,
Shepard SS
,
Dudas G , Sheth M ,
Brown SC
,
Cannon D
,
Erickson BR
,
Gibbons A
,
Schuh A
,
Sealy T
,
Ervin E
,
Frace M ,
Uyeki TM
,
Nichol ST
,
Stroher U
.
J Infect Dis 2016 214 S333-S341
Improving pandemic influenza risk assessment.
Russell CA , Kasson PM ,
Donis RO
,
Riley S , Dunbar J , Rambaut A , Asher J ,
Burke S
,
Davis CT
,
Garten RJ
,
Gnanakaran S , Hay SI , Herfst S , Lewis NS , Lloyd-Smith JO , Macken CA , Maurer-Stroh S ,
Neuhaus E
,
Parrish CR , Pepin KM ,
Shepard SS
,
Smith DL , Suarez DL ,
Trock SC
,
Widdowson MA
,
George DB , Lipsitch M , Bloom JD .
Elife 2014 3 e03883
LABEL: fast and accurate lineage assignment with assessment of H5N1 and H9N2 influenza A hemagglutinins.
Shepard SS
,
Davis CT
,
Bahl J ,
Rivailler P
,
York IA
,
Donis RO
.
PLoS One 2014 9 (1) e86921
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Page last reviewed:
Feb 1, 2024
Content source:
Public Health Genomics Branch in the Division of Blood Disorders and Public Health Genomics
,
National Center on Birth Defects and Developmental Disabilities
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