CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Sep 16, 2024. (Total: 6309 publications)

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Records 1-30 (of 31 Records)

Query Trace: Shankar A[original query]
High HIV diversity, recombination, and superinfection revealed in a large outbreak among persons who inject drugs in Kentucky and Ohio, USA Switzer WM , Shankar A , Jia H , Knyazev S , Ambrosio F , Kelly R , Zheng H , Campbell EM , Cintron R , Pan Y , Saduvala N , Panneer N , Richman R , Singh MB , Thoroughman DA , Blau EF , Khalil GM , Lyss S , Heneine W . Virus Evol 2024 10 (1) veae015
Correction for Weigand et al., Complete Genome Sequences of Two Bordetella hinzii Strains Isolated from Humans. Weigand MR , Changayil S , Kulasekarapandian Y , Batra D , Loparev V , Juieng P , Rowe L , Sheth M , Davis JK , Tondella ML . Genome Announc 2016 4 (1)
HantaNet: A new microbetrace application for hantavirus classification, genomic surveillance, epidemiology and outbreak investigations Cintron R , Whitmer SLM , Moscoso E , Campbell EM , Kelly R , Talundzic E , Mobley M , Chiu KW , Shedroff E , Shankar A , Montgomery JM , Klena JD , Switzer WM . Viruses 2023 15 (11)
Transmitted HIV drug resistance in Bulgaria occurs in clusters of individuals from different transmission groups and various subtypes (2012-2020) Alexiev I , Shankar A , Pan Y , Grigorova L , Partsuneva A , Dimitrova R , Gancheva A , Kostadinova A , Elenkov I , Yancheva N , Grozdeva R , Strashimirov D , Stoycheva M , Baltadzhiev I , Doichinova T , Pekova L , Kosmidis M , Emilova R , Nikolova M , Switzer WM . Viruses 2023 15 (4)
MicrobeTrace: Retooling molecular epidemiology for rapid public health response. Campbell EM , Boyles A , Shankar A , Kim J , Knyazev S , Cintron R , Switzer WM . PLoS Comput Biol 2021 17 (9) e1009300
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction. Knyazev S , Tsyvina V , Shankar A , Melnyk A , Artyomenko A , Malygina T , Porozov YB , Campbell EM , Switzer WM , Skums P , Mangul S , Zelikovsky A . Nucleic Acids Res 2021 49 (17) e102
Human T-cell lymphotropic virus type 1 transmission dynamics in rural villages in the democratic republic of the congo with high nonhuman primate exposure. Halbrook M , Gadoth A , Shankar A , Zheng H , Campbell EM , Hoff NA , Muyembe JJ , Wemakoy EO , Rimoin AW , Switzer WM . PLoS Negl Trop Dis 2021 15 (1) e0008923
Complete Genome Sequence of a Baboon Simian Foamy Virus Isolated from an Infected Human. Shankar A , Shanmugam V , Switzer WM . Microbiol Resour Announc 2020 9 (27)
Phylodynamic Analysis Complements Partner Services by Identifying Acute and Unreported HIV Transmission. Campbell EM , Patala A , Shankar A , Li JF , Johnson JA , Westheimer E , Gay CL , Cohen SE , Switzer WM , Peters PJ . Viruses 2020 12 (2)
Molecular Analysis of the Complete Genome of a Simian Foamy Virus Infecting Hylobates pileatus (pileated gibbon) Reveals Ancient Co-Evolution with Lesser Apes. Shankar A , Sibley SD , Goldberg TL , Switzer WM . Viruses 2019 11 (7)
Genome-wide patterns of gene expression in a wild primate indicate species-specific mechanisms associated with tolerance to natural simian immunodeficiency virus infection. Simons ND , Eick GN , Ruiz-Lopez MJ , Hyeroba D , Omeja PA , Weny G , Chapman CA , Goldberg TL , Zheng H , Shankar A , Switzer WM , Frost SDW , Jones JH , Sterner KN , Ting N . Genome Biol Evol 2019 11 (6) 1630-1643
Detailed Transmission Network Analysis of a Large Opiate-Driven Outbreak of HIV Infection in the United States. Campbell EM , Jia H , Shankar A , Hanson D , Luo W , Masciotra S , Owen SM , Oster AM , Galang RR , Spiller MW , Blosser SJ , Chapman E , Roseberry JC , Gentry J , Pontones P , Duwve J , Peyrani P , Kagan RM , Whitcomb JM , Peters PJ , Heneine W , Brooks JT , Switzer WM . J Infect Dis 2017 216 (9) 1053-1062
Dual simian foamy virus/human immunodeficiency virus type 1 infections in persons from Cote d'Ivoire Switzer WM , Tang S , Zheng H , Shankar A , Sprinkle PS , Sullivan V , Granade TC , Heneine W . PLoS One 2016 11 (6) e0157709
Origin and spread of HIV-1 in persons who inject drugs in Bulgaria. Alexiev I , Shankar A , Dimitrova R , Gancheva A , Kostadinova A , Teoharov P , Golkocheva E , Nikolova M , Muhtarova M , Elenkov I , Stoycheva M , Nikolova D , Varleva T , Switzer WM . Infect Genet Evol 2016 46 269-278
Finished Annotated Genome Sequence of Burkholderia pseudomallei Strain Bp1651, a Multidrug-Resistant Clinical Isolate. Bugrysheva JV , Sue D , Hakovirta J , Loparev VN , Knipe K , Sammons SA , Ranganathan-Ganakammal S , Changayil S , Srinivasamoorthy G , Weil MR , Tatusov RL , Gee JE , Elrod MG , Hoffmaster AR , Weigel LM . Genome Announc 2015 3 (6)
An expanded search for simian foamy viruses (SFV) in Brazilian New World primates identifies novel SFV lineages and host age-related infections. Muniz CP , Jia H , Shankar A , Troncoso LL , Augusto AM , Farias E , Pissinatti A , Fedullo LP , Santos AF , Soares MA , Switzer WM . Retrovirology 2015 12 (1) 94
Complete Genome Sequences of Two Bordetella hinzii Strains Isolated from Humans. Weigand MR , Changayil S , Kulasekarapandian Y , Tondella ML . Genome Announc 2015 3 (4)
The mitochondrial genome of the lone star tick (Amblyomma americanum). Williams-Newkirk AJ , Burroughs M , Changayil SS , Dasch GA . Ticks Tick Borne Dis 2015 6 (6) 793-801
Chlamydia psittaci Comparative Genomics Reveals Intraspecies Variations in the Putative Outer Membrane and Type III Secretion System Genes. Wolff BJ , Morrison SS , Pesti D , Ganakammal SR , Srinivasamoorthy G , Changayil S , Weil MR , MacCannell D , Rowe L , Frace M , Ritchie BW , Dean D , Winchell J . Microbiology (Reading) 2015 161 (7) 1378-91
Genome Sequences of 228 Shiga Toxin-Producing Escherichia coli Isolates and 12 Isolates Representing Other Diarrheagenic E. coli Pathotypes. Trees E , Strockbine N , Changayil S , Ranganathan S , Zhao K , Weil R , MacCannell D , Sabol A , Schmidtke A , Martin H , Stripling D , Ribot EM , Gerner-Smidt P . Genome Announc 2014 2 (4)
Discovery and full genome characterization of a new SIV lineage infecting red-tailed guenons (Cercopithecus ascanius schmidti) in Kibale National Park, Uganda. Lauck M , Switzer WM , Sibley SD , Hyeroba D , Tumukunde A , Weny G , Shankar A , Greene JM , Ericsen AJ , Zheng H , Ting N , Chapman CA , Friedrich TC , Goldberg TL , O'Connor DH . Retrovirology 2014 11 (1) 55
Whole-genome analysis of Exserohilum rostratum from an outbreak of fungal meningitis and other infections. Litvintseva AP , Hurst S , Gade L , Frace MA , Hilsabeck R , Schupp JM , Gillece JD , Roe C , Smith D , Keim P , Lockhart SR , Changayil S , Weil MR , MacCannell DR , Brandt ME , Engelthaler DM . J Clin Microbiol 2014 52 (9) 3216-22
Discovery and full genome characterization of two highly divergent simian immunodeficiency viruses infecting black-and-white colobus monkeys (Colobus guereza) in Kibale National Park, Uganda Lauck M , Baggett HC , Switzer WM , Sibley SD , Hyeroba D , Tumukunde A , Weny G , Taylor B , Shankar A , Ting N , Chapman CA , Friedrich TC , Goldberg TL , OConnor DH . Retrovirology 2013 10 (1) 107
Permanent neonatal diabetes mellitus: prevalence and genetic diagnosis in the SEARCH for Diabetes in Youth Study. Kanakatti Shankar R , Pihoker C , Dolan LM , Standiford D , Badaru A , Dabelea D , Rodriguez B , Black MH , Imperatore G , Hattersley A , Ellard S , Gilliam LK . Pediatr Diabetes 2013 14 (3) 174-80
Detailed molecular epidemiologic characterization of HIV-1 infection in Bulgaria reveals broad diversity and evolving phylodynamics. Ivanov IA , Beshkov D , Shankar A , Hanson DL , Paraskevis D , Georgieva V , Karamacheva L , Taskov H , Varleva T , Elenkov I , Stoicheva M , Nikolova D , Switzer WM . PLoS One 2013 8 (3) e59666
Economic and health impacts associated with a Salmonella typhimurium drinking water outbreak-Alamosa, CO, 2008 Ailes E , Budge P , Shankar M , Collier S , Brinton W , Cronquist A , Chen M , Thornton A , Beach MJ , Brunkard JM . PLoS One 2013 8 (3) e57439
Draft genome sequences of Bordetella holmesii strains from blood (F627) and nasopharynx (H558). Tatti KM , Loparev VN , Ranganathanganakammal S , Changayil S , Frace M , Weil MR , Sammons S , Maccannell D , Mayer LW , Tondella ML . Genome Announc 2013 1 (2) e0005613
Human T-cell lymphotropic virus type 1 infection among U.S. thalassemia patients Switzer W , Shankar A , Trimble S , Thompson AA , Giardina PJ , Cohen AR , Coates TD , Vichinsky E , Neufeld EJ , Boudreaux JM , Heneine PW . AIDS Res Hum Retroviruses 2013 29 (7) 1006-9
Novel simian foamy virus infections from multiple monkey species in women from the Democratic Republic of Congo Switzer WM , Tang S , Ahuka-Mundeke S , Shankar A , Hanson DL , Zheng H , Ayouba A , Wolfe ND , Lebreton M , Djoko CF , Tamoufe U , Esteban A , Heneine W , Peeters M , Wright LL , Muyembe-Tamfum JJ , Wemakoy EO , Mulembakani P , Hoff NA , Rimoin AW . Retrovirology 2012 9 100
No evidence of murine leukemia virus-related viruses in live attenuated human vaccines. Switzer WM , Zheng H , Simmons G , Zhou Y , Tang S , Shankar A , Kapusinszky B , Delwart EL , Heneine W . PLoS One 2011 6 (12) e29223