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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Oct 07, 2024. (Total: 6342 publications)
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Records 1-30 (of 42 Records)
Query Trace: Shah N[original query]
Interim effectiveness of updated 2023-2024 (monovalent XBB.1.5) COVID-19 vaccines against COVID-19-associated hospitalization among adults aged ≥18 years with immunocompromising conditions - VISION Network, September 2023-February 2024
Link-Gelles R , Rowley EAK , DeSilva MB , Dascomb K , Irving SA , Klein NP , Grannis SJ , Ong TC , Weber ZA , Fleming-Dutra KE , McEvoy CE , Akinsete O , Bride D , Sheffield T , Naleway AL , Zerbo O , Fireman B , Hansen J , Goddard K , Dixon BE , Rogerson C , Fadel WF , Duszynski T , Rao S , Barron MA , Reese SE , Ball SW , Dunne MM , Natarajan K , Okwuazi E , Shah AB , Wiegand R , Tenforde MW , Payne AB .
MMWR Morb Mortal Wkly Rep 2024 73 (12) 271-276 type
Large-scale validation of skin prion seeding activity as a biomarker for diagnosis of prion diseases
Zhang W , Orrú CD , Foutz A , Ding M , Yuan J , Shah SZA , Zhang J , Kotobelli K , Gerasimenko M , Gilliland T , Chen W , Tang M , Cohen M , Safar J , Xu B , Hong DJ , Cui L , Hughson AG , Schonberger LB , Tatsuoka C , Chen SG , Greenlee JJ , Wang Z , Appleby BS , Caughey B , Zou WQ .
Acta Neuropathol 2024 147 (1) 17 type
Early detection and surveillance of the SARS-CoV-2 variant BA.2.86 - Worldwide, July-October 2023
Lambrou AS , South E , Ballou ES , Paden CR , Fuller JA , Bart SM , Butryn DM , Novak RT , Browning SD , Kirby AE , Welsh RM , Cornforth DM , MacCannell DR , Friedman CR , Thornburg NJ , Hall AJ , Hughes LJ , Mahon BE , Daskalakis DC , Shah ND , Jackson BR , Kirking HL .
MMWR Morb Mortal Wkly Rep 2023 72 (43) 1162-1167 type
Identification of tecovirimat resistance-associated mutations in human monkeypox virus - Los Angeles County
Garrigues JM , Hemarajata P , Karan A , Shah NK , Alarcón J , Marutani AN , Finn L , Smith TG , Gigante CM , Davidson W , Wynn NT , Hutson CL , Kim M , Terashita D , Balter SE , Green NM .
Antimicrob Agents Chemother 2023 67 (7) e0056823
The United States COVID-19 Forecast Hub dataset.
Cramer EY , Huang Y , Wang Y , Ray EL , Cornell M , Bracher J , Brennen A , Rivadeneira AJC , Gerding A , House K , Jayawardena D , Kanji AH , Khandelwal A , Le K , Mody V , Mody V , Niemi J , Stark A , Shah A , Wattanchit N , Zorn MW , Reich NG , US COVID-19 Forecast Hub Consortium , Lopez VK , Walker JW , Slayton RB , Johansson MA , Biggerstaff M .
Sci Data 2022 9 (1) 462 type
Antimicrobial-resistant nontyphoidal Salmonella infection following international travel - United States, 2018-2019
Ford L , Shah HJ , Eikmeier D , Hanna S , Chen J , Tagg KA , Langley G , Payne DC , Plumb ID .
J Infect Dis 2023 228 (5) 533-541 type
Increased Multidrug-Resistant Salmonella enterica I Serotype 4,[5],12:i:- Infections Associated with Pork, United States, 2009-2018.
Plumb ID , Brown AC , Stokes EK , Chen JC , Carleton H , Tolar B , Sundararaman P , Saupe A , Payne DC , Shah HJ , Folster JP , Friedman CR .
Emerg Infect Dis 2023 29 (2) 314-22 type
Novel application of one-step pooled molecular testing and maximum likelihood approaches to estimate the prevalence of malaria parasitaemia among rapid diagnostic test negative samples in western Kenya.
Shah MP , Chebore W , Lyles RH , Otieno K , Zhou Z , Plucinski M , Waller LA , Odongo W , Lindblade KA , Kariuki S , Samuels AM , Desai M , Mitchell RM , Shi YP .
Malar J 2022 21 (1) 319
Temporal trends in molecular markers of drug resistance in Plasmodium falciparum in human blood and profiles of corresponding resistant markers in mosquito oocysts in Asembo, western Kenya.
Zhou Z , Gimnig JE , Sergent SB , Liu Y , Abong'o B , Otieno K , Chebore W , Shah MP , Williamson J , Ter Kuile FO , Hamel MJ , Kariuki S , Desai M , Samuels AM , Walker ED , Shi YP .
Malar J 2022 21 (1) 265
Primary and Secondary Attack Rates by Vaccination Status after a SARS-CoV-2 B.1.617.2 (Delta) Variant Outbreak at a Youth Summer Camp - Texas, June 2021.
Baker JM , Shah MM , O'Hegarty M , Pomeroy M , Keiser P , Ren P , Weaver SC , Maknojia S , Machado RRG , Mitchell BM , McConnell A , Tate JE , Kirking HL .
J Pediatric Infect Dis Soc 2022 11 (12) 550-556
Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.
Karthikeyan S , Levy JI , De Hoff P , Humphrey G , Birmingham A , Jepsen K , Farmer S , Tubb HM , Valles T , Tribelhorn CE , Tsai R , Aigner S , Sathe S , Moshiri N , Henson B , Mark AM , Hakim A , Baer NA , Barber T , Belda-Ferre P , Chacón M , Cheung W , Cresini ES , Eisner ER , Lastrella AL , Lawrence ES , Marotz CA , Ngo TT , Ostrander T , Plascencia A , Salido RA , Seaver P , Smoot EW , McDonald D , Neuhard RM , Scioscia AL , Satterlund AM , Simmons EH , Abelman DB , Brenner D , Bruner JC , Buckley A , Ellison M , Gattas J , Gonias SL , Hale M , Hawkins F , Ikeda L , Jhaveri H , Johnson T , Kellen V , Kremer B , Matthews G , McLawhon RW , Ouillet P , Park D , Pradenas A , Reed S , Riggs L , Sanders A , Sollenberger B , Song A , White B , Winbush T , Aceves CM , Anderson C , Gangavarapu K , Hufbauer E , Kurzban E , Lee J , Matteson NL , Parker E , Perkins SA , Ramesh KS , Robles-Sikisaka R , Schwab MA , Spencer E , Wohl S , Nicholson L , McHardy IH , Dimmock DP , Hobbs CA , Bakhtar O , Harding A , Mendoza A , Bolze A , Becker D , Cirulli ET , Isaksson M , Schiabor Barrett KM , Washington NL , Malone JD , Schafer AM , Gurfield N , Stous S , Fielding-Miller R , Garfein RS , Gaines T , Anderson C , Martin NK , Schooley R , Austin B , MacCannell DR , Kingsmore SF , Lee W , Shah S , McDonald E , Yu AT , Zeller M , Fisch KM , Longhurst C , Maysent P , Pride D , Khosla PK , Laurent LC , Yeo GW , Andersen KG , Knight R .
Nature 2022 609 (7925) 101-108
Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the United States.
Cramer EY , Ray EL , Lopez VK , Bracher J , Brennen A , Castro Rivadeneira AJ , Gerding A , Gneiting T , House KH , Huang Y , Jayawardena D , Kanji AH , Khandelwal A , Le K , Mühlemann A , Niemi J , Shah A , Stark A , Wang Y , Wattanachit N , Zorn MW , Gu Y , Jain S , Bannur N , Deva A , Kulkarni M , Merugu S , Raval A , Shingi S , Tiwari A , White J , Abernethy NF , Woody S , Dahan M , Fox S , Gaither K , Lachmann M , Meyers LA , Scott JG , Tec M , Srivastava A , George GE , Cegan JC , Dettwiller ID , England WP , Farthing MW , Hunter RH , Lafferty B , Linkov I , Mayo ML , Parno MD , Rowland MA , Trump BD , Zhang-James Y , Chen S , Faraone SV , Hess J , Morley CP , Salekin A , Wang D , Corsetti SM , Baer TM , Eisenberg MC , Falb K , Huang Y , Martin ET , McCauley E , Myers RL , Schwarz T , Sheldon D , Gibson GC , Yu R , Gao L , Ma Y , Wu D , Yan X , Jin X , Wang YX , Chen Y , Guo L , Zhao Y , Gu Q , Chen J , Wang L , Xu P , Zhang W , Zou D , Biegel H , Lega J , McConnell S , Nagraj VP , Guertin SL , Hulme-Lowe C , Turner SD , Shi Y , Ban X , Walraven R , Hong QJ , Kong S , van de Walle A , Turtle JA , Ben-Nun M , Riley S , Riley P , Koyluoglu U , DesRoches D , Forli P , Hamory B , Kyriakides C , Leis H , Milliken J , Moloney M , Morgan J , Nirgudkar N , Ozcan G , Piwonka N , Ravi M , Schrader C , Shakhnovich E , Siegel D , Spatz R , Stiefeling C , Wilkinson B , Wong A , Cavany S , España G , Moore S , Oidtman R , Perkins A , Kraus D , Kraus A , Gao Z , Bian J , Cao W , Lavista Ferres J , Li C , Liu TY , Xie X , Zhang S , Zheng S , Vespignani A , Chinazzi M , Davis JT , Mu K , Pastore YPiontti A , Xiong X , Zheng A , Baek J , Farias V , Georgescu A , Levi R , Sinha D , Wilde J , Perakis G , Bennouna MA , Nze-Ndong D , Singhvi D , Spantidakis I , Thayaparan L , Tsiourvas A , Sarker A , Jadbabaie A , Shah D , Della Penna N , Celi LA , Sundar S , Wolfinger R , Osthus D , Castro L , Fairchild G , Michaud I , Karlen D , Kinsey M , Mullany LC , Rainwater-Lovett K , Shin L , Tallaksen K , Wilson S , Lee EC , Dent J , Grantz KH , Hill AL , Kaminsky J , Kaminsky K , Keegan LT , Lauer SA , Lemaitre JC , Lessler J , Meredith HR , Perez-Saez J , Shah S , Smith CP , Truelove SA , Wills J , Marshall M , Gardner L , Nixon K , Burant JC , Wang L , Gao L , Gu Z , Kim M , Li X , Wang G , Wang Y , Yu S , Reiner RC , Barber R , Gakidou E , Hay SI , Lim S , Murray C , Pigott D , Gurung HL , Baccam P , Stage SA , Suchoski BT , Prakash BA , Adhikari B , Cui J , Rodríguez A , Tabassum A , Xie J , Keskinocak P , Asplund J , Baxter A , Oruc BE , Serban N , Arik SO , Dusenberry M , Epshteyn A , Kanal E , Le LT , Li CL , Pfister T , Sava D , Sinha R , Tsai T , Yoder N , Yoon J , Zhang L , Abbott S , Bosse NI , Funk S , Hellewell J , Meakin SR , Sherratt K , Zhou M , Kalantari R , Yamana TK , Pei S , Shaman J , Li ML , Bertsimas D , Skali Lami O , Soni S , Tazi Bouardi H , Ayer T , Adee M , Chhatwal J , Dalgic OO , Ladd MA , Linas BP , Mueller P , Xiao J , Wang Y , Wang Q , Xie S , Zeng D , Green A , Bien J , Brooks L , Hu AJ , Jahja M , McDonald D , Narasimhan B , Politsch C , Rajanala S , Rumack A , Simon N , Tibshirani RJ , Tibshirani R , Ventura V , Wasserman L , O'Dea EB , Drake JM , Pagano R , Tran QT , Ho LST , Huynh H , Walker JW , Slayton RB , Johansson MA , Biggerstaff M , Reich NG .
Proc Natl Acad Sci U S A 2022 119 (15) e2113561119
The First Genome-Wide Association Study for Type 2 Diabetes in Youth: The Progress in Diabetes Genetics in Youth (ProDiGY) Consortium.
Srinivasan S , Chen L , Todd J , Divers J , Gidding S , Chernausek S , Gubitosi-Klug RA , Kelsey MM , Shah R , Black MH , Wagenknecht LE , Manning A , Flannick J , Imperatore G , Mercader JM , Dabelea D , Florez JC .
Diabetes 2021 70 (4) 996-1005
Immunoglobulin A Targets a Unique Subset of the Microbiota in Inflammatory Bowel Disease.
Shapiro JM , de Zoete MR , Palm NW , Laenen Y , Bright R , Mallette M , Bu K , Bielecka AA , Xu F , Hurtado-Lorenzo A , Shah SA , Cho JH , LeLeiko NS , Sands BE , Flavell RA , Clemente JC .
Cell Host Microbe 2020 29 (1) 83-93 e3
Telehealth Practice Among Health Centers During the COVID-19 Pandemic - United States, July 11-17, 2020.
Demeke HB , Pao LZ , Clark H , Romero L , Neri A , Shah R , McDow KB , Tindall E , Iqbal NJ , Hatfield-Timajchy K , Bolton J , Le X , Hair B , Campbell S , Bui C , Sandhu P , Nwaise I , Armstrong PA , Rose MA .
MMWR Morb Mortal Wkly Rep 2020 69 (50) 1902-1905
Trends in County-Level COVID-19 Incidence in Counties With and Without a Mask Mandate - Kansas, June 1-August 23, 2020.
Van Dyke ME , Rogers TM , Pevzner E , Satterwhite CL , Shah HB , Beckman WJ , Ahmed F , Hunt DC , Rule J .
MMWR Morb Mortal Wkly Rep 2020 69 (47) 1777-1781
Modeling Missing Cases and Transmission Links in Networks of Extensively Drug-Resistant Tuberculosis in KwaZulu-Natal, South Africa.
Nelson KN , Gandhi NR , Mathema B , Lopman BA , Brust JCM , Auld SC , Ismail N , Omar SV , Brown TS , Allana S , Campbell A , Moodley P , Mlisana K , Shah NS , Jenness SM .
Am J Epidemiol 2020 189 (7) 735-745 type
CoMPARA: Collaborative Modeling Project for Androgen Receptor Activity.
Mansouri K , Kleinstreuer N , Abdelaziz AM , Alberga D , Alves VM , Andersson PL , Andrade CH , Bai F , Balabin I , Ballabio D , Benfenati E , Bhhatarai B , Boyer S , Chen J , Consonni V , Farag S , Fourches D , Garcia-Sosa AT , Gramatica P , Grisoni F , Grulke CM , Hong H , Horvath D , Hu X , Huang R , Jeliazkova N , Li J , Li X , Liu H , Manganelli S , Mangiatordi GF , Maran U , Marcou G , Martin T , Muratov E , Nguyen DT , Nicolotti O , Nikolov NG , Norinder U , Papa E , Petitjean M , Piir G , Pogodin P , Poroikov V , Qiao X , Richard AM , Roncaglioni A , Ruiz P , Rupakheti C , Sakkiah S , Sangion A , Schramm KW , Selvaraj C , Shah I , Sild S , Sun L , Taboureau O , Tang Y , Tetko IV , Todeschini R , Tong W , Trisciuzzi D , Tropsha A , Van Den Driessche G , Varnek A , Wang Z , Wedebye EB , Williams AJ , Xie H , Zakharov AV , Zheng Z , Judson RS .
Environ Health Perspect 2020 128 (2) 27002
Combining genomics and epidemiology to track mumps virus transmission in the United States.
Wohl S , Metsky HC , Schaffner SF , Piantadosi A , Burns M , Lewnard JA , Chak B , Krasilnikova LA , Siddle KJ , Matranga CB , Bankamp B , Hennigan S , Sabina B , Byrne EH , McNall RJ , Shah RR , Qu J , Park DJ , Gharib S , Fitzgerald S , Barreira P , Fleming S , Lett S , Rota PA , Madoff LC , Yozwiak NL , MacInnis BL , Smole S , Grad YH , Sabeti PC .
PLoS Biol 2020 18 (2) e3000611 type
Pre-detection history of extensively drug-resistant tuberculosis in KwaZulu-Natal, South Africa.
Brown TS , Challagundla L , Baugh EH , Omar SV , Mustaev A , Auld SC , Shah NS , Kreiswirth BN , Brust JCM , Nelson KN , Narechania A , Kurepina N , Mlisana K , Bonneau R , Eldholm V , Ismail N , Kolokotronis SO , Robinson DA , Gandhi NR , Mathema B .
Proc Natl Acad Sci U S A 2019 116 (46) 23284-23291 type
Outbreak of Salmonella Newport Infections with Decreased Susceptibility to Azithromycin Linked to Beef Obtained in the United States and Soft Cheese Obtained in Mexico - United States, 2018-2019.
Plumb ID , Schwensohn CA , Gieraltowski L , Tecle S , Schneider ZD , Freiman J , Cote A , Noveroske D , Kolsin J , Brandenburg J , Chen JC , Tagg KA , White PB , Shah HJ , Francois Watkins LK , Wise ME , Friedman CR .
MMWR Morb Mortal Wkly Rep 2019 68 (33) 713-717 type
Social mixing and clinical features linked with transmission in a network of extensively drug-resistant (XDR) tuberculosis cases in KwaZulu-Natal, South Africa.
Nelson KN , Jenness SM , Mathema B , Lopman BA , Auld SC , Shah NS , Brust JCM , Ismail N , Omar SV , Brown TS , Allana S , Campbell A , Moodley P , Mlisana K , Gandhi NR .
Clin Infect Dis 2019 70 (11) 2396-2402 type
Ebola Virus Infection Associated with Transmission from Survivors.
Den Boon S , Marston BJ , Nyenswah TG , Jambai A , Barry M , Keita S , Durski K , Senesie SS , Perkins D , Shah A , Green HH , Hamblion EL , Lamunu M , Gasasira A , Mahmoud NO , Djingarey MH , Morgan O , Crozier I , Dye C .
Emerg Infect Dis 2019 25 (2) 249-255 type
Evaluation of the impact of a sequencing assay for detection of drug resistance on the clinical management of tuberculosis.
Lowenthal P , Lin SG , Desmond E , Shah N , Flood J , Barry PM .
Clin Infect Dis 2018 69 (4) 668-675 type
Extensively drug-resistant tuberculosis in South Africa: genomic evidence supporting transmission in communities.
Auld SC , Sarita Shah N , Mathema B , Brown TS , Ismail N , Omar SV , Brust JCM , Nelson KN , Allana S , Campbell A , Mlisana K , Moodley P , Gandhi NR .
Eur Respir J 2018 52 (4)
Capsule-Negative emm Types Are an Increasing Cause of Pediatric Group A Streptococcal Infections at a Large Pediatric Hospital in Texas.
Flores AR , Chase McNeil J , Shah B , Van Beneden C , Shelburne SA3rd .
J Pediatric Infect Dis Soc 2018 8 (3) 244-250 type
Spatial Patterns of Extensively Drug-Resistant Tuberculosis Transmission in KwaZulu-Natal, South Africa.
Nelson KN , Shah NS , Mathema B , Ismail N , Brust JCM , Brown TS , Auld SC , Omar SV , Morris N , Campbell A , Allana S , Moodley P , Mlisana K , Gandhi NR .
J Infect Dis 2018 218 (12) 1964-1973
Where is tuberculosis transmission happening? Insights from the literature, new tools to study transmission and implications for the elimination of tuberculosis.
Auld SC , Shah NS , Cohen T , Martinson NA , Gandhi NR .
Respirology 2018
Solid Organ Transplant-Transmitted Tuberculosis Linked to a Community Outbreak - California, 2015.
Kay A , Barry PM , Annambhotla P , Greene C , Cilnis M , Chin-Hong P , Arger N , McNitt L , Neidlinger N , Shah N , Basavaraju SV , Kuehnert M , Shaw T .
MMWR Morb Mortal Wkly Rep 2017 66 (30) 801-805
Polymorphisms in the vitamin D receptor gene are associated with reduced rate of sputum culture conversion in multidrug-resistant tuberculosis patients in South Africa.
Magee MJ , Sun YV , Brust JCM , Shah NS , Ning Y , Allana S , Campbell A , Hui Q , Mlisana K , Moodley P , Gandhi NR .
PLoS One 2017 12 (7) e0180916
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