CDC-Authored Genomics and Precision Health Publications Database
Last data update: Nov 17, 2023. (Total: 4477 publications since 2011)
| Query Trace: Rota P[original query] |
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| Measles virus transmission patterns and public health responses during Operation Allies Welcome: a descriptive epidemiological study
Masters NB , Beck AS , Mathis AD , Leung J , Raines K , Paul P , Stanley SE , Weg AL , Pieracci EG , Gearhart S , Jumabaeva M , Bankamp B , Rota PA , Sugerman DE , Gastaaduy PA . Lancet Public Health 2023 8 (8) e618-e628 |
| VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data.
Wagner DD , Marine RL , Ramos E , Ng TFF , Castro CJ , Okomo-Adhiambo M , Harvey K , Doho G , Kelly R , Jain Y , Tatusov RL , Silva H , Rota PA , Khan AN , Oberste MS . Microbiol Spectr 2022 10 (2) e0256421 
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| 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales.
Kuhn JH , Adkins S , Agwanda BR , AlKubrusli R , AlkhovskyAxocCepeBapo SV , Amarasinghe GK , Avi-upanc T , Aylln MA , Bahl J , Balkema-Buschmann A , Ballinger MJ , Basler CF , Bavari S , Beer M , Bejerman N , Bennett AJ , Bente DA , Bergeron , Bird BH , Blair CD , Blasdell KR , Blystad DR , Bojko J , Borth WB , Bradfute S , Breyta R , Briese T , Brown PA , Brown JK , Buchholz UJ , Buchmeier MJ , Bukreyev A , Burt F , Bttner C , Calisher CH , Cao M , Casas I , Chandran K , Charrel RN , Cheng Q , Chiaki Y , Chiapello M , Choi IR , Ciuffo M , Clegg JCS , Crozier I , DalB E , delaTorre JC , deLamballerie X , deSwart RL , Debat H , Dheilly NM , DiCicco E , DiPaola N , DiSerio F , Dietzgen RG , Digiaro M , Dolnik O , Drebot MA , Drexler JF , Dundon WG , Duprex WP , Drrwald R , Dye JM , Easton AJ , Ebihara H , Elbeaino T , Ergnay K , Ferguson HW , Fooks AR , Forgia M , Formenty PBH , Frnov J , Freitas-Asta J , Fu J , Frl S , Gago-Zachert S , Go GF , Garca ML , Garca-Sastre A , Garrison AR , Gaskin T , Gonzalez JJ , Griffiths A , Goldberg TL , Groschup MH , Gnther S , Hall RA , Hammond J , Han T , Hepojoki J , Hewson R , Hong J , Hong N , Hongo S , Horie M , Hu JS , Hu T , Hughes HR , Httner F , Hyndman TH , Ilyas M , Jalkanen R , Jing D , Jonson GB , Junglen S , Kadono F , Kaukinen KH , Kawate M , Klempa B , Klingstrm J , Kobinger G , Koloniuk I , Kond H , Koonin EV , Krupovic M , Kubota K , Kurath G , Laenen L , Lambert AJ , Langevin SL , Lee B , Lefkowitz EJ , Leroy EM , Li S , Li L , L J , Liu H , Lukashevich IS , Maes P , deSouza WM , Marklewitz M , Marshall SH , Marzano SL , Massart S , McCauley JW , Melzer M , Mielke-Ehret N , Miller KM , Ming TJ , Mirazimi A , Mordecai GJ , Mhlbach HP , Mhlberger E , Naidu R , Natsuaki T , Navarro JA , NetesovHecoCepeBopo SV , Neumann G , Nowotny N , Nunes MRT , Olmedo-Velarde A , Palacios G , Palls V , Plyi B , Papa A , Paraskevopoulou S , Park AC , Parrish CR , Patterson DA , Pauvolid-Corra A , Pawska JT , Payne S , Peracchio C , Prez DR , Postler TS , Qi L , Radoshitzky SR , Resende RO , Reyes CA , Rima BK , Luna GR , Romanowski V , Rota P , Rubbenstroth D , Rubino L , Runstadler JA , Sabanadzovic S , Sall AA , Salvato MS , Sang R , Sasaya T , Schulze AD , Schwemmle M , Shi M , Sh X , Sh Z , Shimomoto Y , Shirako Y , Siddell SG , Simmonds P , Sironi M , Smagghe G , Smither S , Song JW , Spann K , Spengler JR , Stenglein MD , Stone DM , Sugano J , Suttle CA , Tabata A , Takada A , Takeuchi S , Tchouassi DP , Teffer A , Tesh RB , Thornburg NJ , Tomitaka Y , Tomonaga K , Tordo N , Torto B , Towner JS , Tsuda S , Tu C , Turina M , Tzanetakis IE , Uchida J , Usugi T , Vaira AM , Vallino M , vandenHoogen B , Varsani A , Vasilakis N , Verbeek M , vonBargen S , Wada J , Wahl V , Walker PJ , Wang LF , Wang G , Wang Y , Wang Y , Waqas M , Wi T , Wen S , Whitfield AE , Williams JV , Wolf YI , Wu J , Xu L , Yanagisawa H , Yang C , Yang Z , Zerbini FM , Zhai L , Zhang YZ , Zhang S , Zhang J , Zhang Z , Zhou X . Arch Virol 2021 166 (12) 3513-3566 |
| Functional Characterization of Circulating Mumps Viruses with Stop Codon Mutations in the Small Hydrophobic Protein.
Stinnett RC , Beck AS , Lopareva EN , McNall RJ , Latner DR , Hickman CJ , Rota PA , Bankamp B . mSphere 2020 5 (6) |
| 2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales.
Kuhn JH , Adkins S , Alioto D , Alkhovsky SV , Amarasinghe GK , Anthony SJ , Avi-upanc T , Aylln MA , Bahl J , Balkema-Buschmann A , Ballinger MJ , Bartonika T , Basler C , Bavari S , Beer M , Bente DA , Bergeron , Bird BH , Blair C , Blasdell KR , Bradfute SB , Breyta R , Briese T , Brown PA , Buchholz UJ , Buchmeier MJ , Bukreyev A , Burt F , Buzkan N , Calisher CH , Cao M , Casas I , Chamberlain J , Chandran K , Charrel RN , Chen B , Chiumenti M , Choi IR , Clegg JCS , Crozier I , daGraa JV , DalB E , Dvila AMR , delaTorre JC , deLamballerie X , deSwart RL , DiBello PL , DiPaola N , DiSerio F , Dietzgen RG , Digiaro M , Dolja VV , Dolnik O , Drebot MA , Drexler JF , Drrwald R , Dufkova L , Dundon WG , Duprex WP , Dye JM , Easton AJ , Ebihara H , Elbeaino T , Ergnay K , Fernandes J , Fooks AR , Formenty PBH , Forth LF , Fouchier RAM , Freitas-Asta J , Gago-Zachert S , Go GF , Garca ML , Garca-Sastre A , Garrison AR , Gbakima A , Goldstein T , Gonzalez JJ , Griffiths A , Groschup MH , Gnther S , Guterres A , Hall RA , Hammond J , Hassan M , Hepojoki J , Hepojoki S , Hetzel U , Hewson R , Hoffmann B , Hongo S , Hper D , Horie M , Hughes HR , Hyndman TH , Jambai A , Jardim R , Jing D , Jin Q , Jonson GB , Junglen S , Karada S , Keller KE , Klempa B , Klingstrm J , Kobinger G , Kond H , Koonin EV , Krupovic M , Kurath G , Kuzmin IV , Laenen L , Lamb RA , Lambert AJ , Langevin SL , Lee B , Lemos ERS , Leroy EM , Li D , L J , Liang M , Li W , Li Y , Lukashevich IS , Maes P , MarcieldeSouza W , Marklewitz M , Marshall SH , Martelli GP , Martin RR , Marzano SL , Massart S , McCauley JW , Mielke-Ehret N , Minafra A , Minutolo M , Mirazimi A , Mhlbach HP , Mhlberger E , Naidu R , Natsuaki T , Navarro B , Navarro JA , Netesov SV , Neumann G , Nowotny N , Nunes MRT , Nylund A , kland AL , Oliveira RC , Palacios G , Pallas V , Plyi B , Papa A , Parrish CR , Pauvolid-Corra A , Pawska JT , Payne S , Prez DR , Pfaff F , Radoshitzky SR , Rahman AU , Ramos-Gonzlez PL , Resende RO , Reyes CA , Rima BK , Romanowski V , RoblesLuna G , Rota P , Rubbenstroth D , Runstadler JA , Ruzek D , Sabanadzovic S , Salt J , Sall AA , Salvato MS , Sarpkaya K , Sasaya T , Schwemmle M , Shabbir MZ , Sh X , Sh Z , Shirako Y , Simmonds P , irmarov J , Sironi M , Smither S , Smura T , Song JW , Spann KM , Spengler JR , Stenglein MD , Stone DM , Strakov P , Takada A , Tesh RB , Thornburg NJ , Tomonaga K , Tordo N , Towner JS , Turina M , Tzanetakis I , Ulrich RG , Vaira AM , vandenHoogen B , Varsani A , Vasilakis N , Verbeek M , Wahl V , Walker PJ , Wang H , Wang J , Wang X , Wang LF , Wi T , Wells H , Whitfield AE , Williams JV , Wolf YI , W Z , Yang X , Yng X , Yu X , Yutin N , Zerbini FM , Zhang T , Zhang YZ , Zhou G , Zhou X . Arch Virol 2020 165 (12) 3023-3072 |
| Rapid diagnostic tests to address challenges for global measles surveillance.
Brown DW , Warrener L , Scobie HM , Donadel M , Waku-Kouomou D , Mulders MN , Rota PA . Curr Opin Virol 2020 41 77-84 |
| Comparison of Illumina MiSeq and the Ion Torrent PGM and S5 platforms for whole-genome sequencing of picornaviruses and caliciviruses.
Marine RL , Magana LC , Castro CJ , Zhao K , Montmayeur AM , Schmidt A , Diez-Valcarce M , FanNg TF , Vinje J , Burns CC , AllanNix W , Rota PA , Oberste MS . J Virol Methods 2020 280 113865 |
| Genetic Characterization of Mumps Viruses Associated with the Resurgence of Mumps in the United States: 2015-2017.
McNall RJ , Wharton AK , Anderson R , Clemmons N , Lopareva EN , Gonzalez C , Espinosa A , Probert WS , Hacker JK , Liu G , Garfin J , Strain A , Boxrud D , Bryant PW , George KS , Davis T , Griesser RH , Shult P , Bankamp B , Hickman CJ , Wroblewski K , Rota PA . Virus Res 2020 281 197935 |
| Qualitative Variation Among Commercial Immunoassays to Detect Measles-Specific IgG.
Latner DR , Sowers SB , Anthony K , Colley H , Badeau C , Coates J , Wong P , Fakile Y , Interiano C , Pannell KB , Leung-Pineda V , Patel MM , Rota PA , Limbago BM , Hickman CJ . J Clin Microbiol 2020 58 (6) |
| Identifying Vaccine-associated Rash Illness Amidst a Large Measles Outbreak: Minnesota, 2017.
Martin KG , Banerjee E , McMahon M , Kenyon C , Strain A , Muscoplat MH , Gastanaduy PA , Rota PA , Mody RK , Ehresmann K . Clin Infect Dis 2020 71 (9) e517-e519 |
| Combining genomics and epidemiology to track mumps virus transmission in the United States.
Wohl S , Metsky HC , Schaffner SF , Piantadosi A , Burns M , Lewnard JA , Chak B , Krasilnikova LA , Siddle KJ , Matranga CB , Bankamp B , Hennigan S , Sabina B , Byrne EH , McNall RJ , Shah RR , Qu J , Park DJ , Gharib S , Fitzgerald S , Barreira P , Fleming S , Lett S , Rota PA , Madoff LC , Yozwiak NL , MacInnis BL , Smole S , Grad YH , Sabeti PC . PLoS Biol 2020 18 (2) e3000611 |
| Genetic Characterization of Measles and Rubella Viruses Detected Through Global Measles and Rubella Elimination Surveillance, 2016-2018.
Brown KE , Rota PA , Goodson JL , Williams D , Abernathy E , Takeda M , Mulders MN . MMWR Morb Mortal Wkly Rep 2019 68 (26) 587-591 |
| Taxonomy of the order Mononegavirales: update 2019.
Amarasinghe GK , Ayllon MA , Bao Y , Basler CF , Bavari S , Blasdell KR , Briese T , Brown PA , Bukreyev A , Balkema-Buschmann A , Buchholz UJ , Chabi-Jesus C , Chandran K , Chiapponi C , Crozier I , deSwart RL , Dietzgen RG , Dolnik O , Drexler JF , Durrwald R , Dundon WG , Duprex WP , Dye JM , Easton AJ , Fooks AR , Formenty PBH , Fouchier RAM , Freitas-Astua J , Griffiths A , Hewson R , Horie M , Hyndman TH , Jiang D , Kitajima EW , Kobinger GP , Kondo H , Kurath G , Kuzmin IV , Lamb RA , Lavazza A , Lee B , Lelli D , Leroy EM , Li J , Maes P , Marzano SL , Moreno A , Muhlberger E , Netesov SV , Nowotny N , Nylund A , Okland AL , Palacios G , Palyi B , Paweska JT , Payne SL , Prosperi A , Ramos-Gonzalez PL , Rima BK , Rota P , Rubbenstroth D , Shi M , Simmonds P , Smither SJ , Sozzi E , Spann K , Stenglein MD , Stone DM , Takada A , Tesh RB , Tomonaga K , Tordo N , Towner JS , vandenHoogen B , Vasilakis N , Wahl V , Walker PJ , Wang LF , Whitfield AE , Williams JV , Zerbini FM , Zhang T , Zhang YZ , Kuhn JH . Arch Virol 2019 164 (7) 1967-1980 |
| Use of FTA® cards to transport throat swabs and oral fluid samples for molecular detection and genotyping of measles and rubella viruses.
Bankamp B , Sein C , PukutaSimbu E , Anderson R , Abernathy E , Chen MH , MuyembeTamfum JJ , Wannemuehler KA , Waku-Kouomou D , Lopareva EN , Icenogle JP , Rota PA , Goodson JL . J Clin Microbiol 2019 57 (5) |
| Strengthening laboratory surveillance of viral pathogens: Experiences and lessons learned building next-generation sequencing capacity in Ghana.
Marine RL , Ntim NAA , Castro CJ , Attiku KO , Pratt D , Duker E , Agbosu E , Ng TFF , Gatei W , Obodai E , Odoom JK , Walker CL , Rota PA , Oberste MS , Ampofo WK , Balajee SA . Int J Infect Dis 2019 81 231-234 |
| Differences in antigenic sites and other functional regions between genotype A and G mumps virus surface proteins.
Gouma S , Vermeire T , VanGucht S , Martens L , Hutse V , Cremer J , Rota PA , Leroux-Roels G , Koopmans M , Binnendijk RV , Vandermarliere E . Sci Rep 2018 8 (1) 13337 |
| Taxonomy of the order Mononegavirales: update 2018.
Amarasinghe GK , ArechigaCeballos NG , Banyard AC , Basler CF , Bavari S , Bennett AJ , Blasdell KR , Briese T , Bukreyev A , Cai Y , Calisher CH , CamposLawson C , Chandran K , Chapman CA , Chiu CY , Choi KS , Collins PL , Dietzgen RG , Dolja VV , Dolnik O , Domier LL , Durrwald R , Dye JM , Easton AJ , Ebihara H , Echevarria JE , Fooks AR , Formenty PBH , Fouchier RAM , Freuling CM , Ghedin E , Goldberg TL , Hewson R , Horie M , Hyndman TH , Jiang D , Kityo R , Kobinger GP , Kondo H , Koonin EV , Krupovic M , Kurath G , Lamb RA , Lee B , Leroy EM , Maes P , Maisner A , Marston DA , Mor SK , Muller T , Muhlberger E , Ramirez VMN , Netesov SV , Ng TFF , Nowotny N , Palacios G , Patterson JL , Paweska JT , Payne SL , Prieto K , Rima BK , Rota P , Rubbenstroth D , Schwemmle M , Siddell S , Smither SJ , Song Q , Song T , Stenglein MD , Stone DM , Takada A , Tesh RB , Thomazelli LM , Tomonaga K , Tordo N , Towner JS , Vasilakis N , Vazquez-Moron S , Verdugo C , Volchkov VE , Wahl V , Walker PJ , Wang D , Wang LF , Wellehan JFX , Wiley MR , Whitfield AE , Wolf YI , Ye G , Zhang YZ , Kuhn JH . Arch Virol 2018 163 (8) 2283-2294 |
| Problems of classification in the family Paramyxoviridae.
Rima B , Collins P , Easton A , Fouchier R , Kurath G , Lamb RA , Lee B , Maisner A , Rota P , Wang LF . Arch Virol 2018 163 (5) 1395-1404 |
| Molecular characterisation of measles virus strains among refugees from Central African Republic in Cameroon in 2014.
Ndombo PK , Ndze VN , Mbarga FD , Anderson R , Acho A , EbuaChia J , Njamnshi AK , Rota PA , Waku-Kouomou D . Epidemiol Infect 2018 146 (3) 1-5 |
| Evolutionary analysis of mumps viruses of genotype F collected in mainland China in 2001-2015.
Cui Aili, Rivailler Pierre, Zhu Zhen, Deng Xiuying, Hu Ying, Wang Yan, Li Fangcai, Sun Zhaodan, He Jilan, Si Yuan, Tian Xiaoling, Zhou Shujie, Lei Yake, Zheng Huanying, Rota Paul A, Xu Wenbo.Scientific reports 2017 Dec (1) 17144 . Scientific reports 2017 Dec (1) 17144 |
| Complete Genome Sequences of Mumps and Measles Virus Isolates from Three States in the United States.
Magaña Laura C, Espinosa Alex, Marine Rachel L, Ng Terry Fei Fan, Castro Christina J, Montmayeur Anna M, Hacker Jill K, Scott Samantha, Whyte Thomas, Bankamp Bettina, Oberste M Steven, Rota Paul A.Genome announcements 2017 Aug (33) . Genome announcements 2017 Aug (33) |
| Evaluation of TaqMan Array Card (TAC) for the Detection of Central Nervous System Infections in Kenya.
Onyango Clayton O, Loparev Vladimir, Lidechi Shirley, Bhullar Vinod, Schmid D Scott, Radford Kay, Lo Michael K, Rota Paul, Johnson Barbara W, Munoz Jorge, Oneko Martina, Burton Deron, Black Carolyn M, Neatherlin John, Montgomery Joel M, Fields Barry.Journal of clinical microbiology 2017 Apr . Journal of clinical microbiology 2017 Apr |
| Taxonomy of the order Mononegavirales: update 2017.
Amarasinghe Gaya K, Bào Yīmíng, Basler Christopher F, Bavari Sina, Beer Martin, Bejerman Nicolás, Blasdell Kim R, Bochnowski Alisa, Briese Thomas, Bukreyev Alexander, Calisher Charles H, Chandran Kartik, Collins Peter L, Dietzgen Ralf G, Dolnik Olga, Dürrwald Ralf, Dye John M, Easton Andrew J, Ebihara Hideki, Fang Qi, Formenty Pierre, Fouchier Ron A M, Ghedin Elodie, Harding Robert M, Hewson Roger, Higgins Colleen M, Hong Jian, Horie Masayuki, James Anthony P, Jiāng Dàohóng, Kobinger Gary P, Kondo Hideki, Kurath Gael, Lamb Robert A, Lee Benhur, Leroy Eric M, Li Ming, Maisner Andrea, Mühlberger Elke, Netesov Sergey V, Nowotny Norbert, Patterson Jean L, Payne Susan L, Paweska Janusz T, Pearson Michael N, Randall Rick E, Revill Peter A, Rima Bertus K, Rota Paul, Rubbenstroth Dennis, Schwemmle Martin, Smither Sophie J, Song Qisheng, Stone David M, Takada Ayato, Terregino Calogero, Tesh Robert B, Tomonaga Keizo, Tordo Noël, Towner Jonathan S, Vasilakis Nikos, Volchkov Viktor E, Wahl-Jensen Victoria, Walker Peter J, Wang Beibei, Wang David, Wang Fei, Wang Lin-Fa, Werren John H, Whitfield Anna E, Yan Zhichao, Ye Gongyin, Kuhn Jens H.Archives of virology 2017 Aug (8) 2493-2504 . Archives of virology 2017 Aug (8) 2493-2504 |
| Rapid identification of measles virus vaccine genotypes by real time PCR.
Roy Felicia, Mendoza Lillian, Hiebert Joanne, McNall Rebecca J, Bankamp Bettina, Connolly Sarah, Lüdde Amy, Friedrich Nicole, Mankertz Annette, Rota Paul A, Severini Alberto.Journal of clinical microbiology 2016 Nov . Journal of clinical microbiology 2016 Nov |
| Regulation Of Viral RNA Synthesis By The V Protein Of Parainfluenza Virus 5.
Yang Yang, Zengel James, Sun Minghao, Sleeman Katrina, Timani Khalid Amine, Aligo Jason, Rota Paul, Wu Jianguo, He Biao. J. Virol. 2015 Sep 16. . J. Virol. 2015 Sep 16. |
| Whole-Genome Sequencing During Measles Outbreaks.
Rota Paul A, Bankamp Bettina.J. Infect. Dis. 2015 Jul 6. . J. Infect. Dis. 2015 Jul 6. |
| Genomic diversity of mumps virus and global distribution of the 12 genotypes.
Jin Li, Örvell Claes, Myers Richard, Rota Paul A, Nakayama Tetsuo, Forcic Dubravko, Hiebert Joanne, Brown Kevin E. Rev. Med. Virol. 2015 Mar 25(2) 85-101 . Rev. Med. Virol. 2015 Mar 25(2) 85-101 |
| Evolutionary genetics of genotype H1 measles viruses in China from 1993 to 2012.
Xu Songtao, Zhang Yan, Rivailler Pierre, Wang Huiling, Ji Yixin, Zhen Zhu, Mao Naiying, Li Chongshan, Bellini William J, Xu Wenbo, Rota Paul A. J. Gen. Virol. 2014 Sep 95(Pt 9) 1892-9 . J. Gen. Virol. 2014 Sep 95(Pt 9) 1892-9 |
| Wild-type measles viruses with non-standard genome lengths.
Bankamp Bettina, Liu Chunyu, Rivailler Pierre, Bera Jayati, Shrivastava Susmita, Kirkness Ewen F, Bellini William J, Rota Paul A. PLoS ONE 2014 9(4) e95470 . PLoS ONE 2014 9(4) e95470 |
| Epidemiologic and genetic characteristics of mumps viruses isolated in China from 1995 to 2010.
Cui Aili, Zhu Zhen, Chen Meng, Zheng Huanying, Liu Leng, Wang Yan, Ma Yan, Wang Changyin, Fang Xueqiang, Li Ping, Guan Ronghui, Wang Shuang, Zhou Jianhui, Zheng Lei, Gao Hui, Ding Zhengrong, Li Liqun, Bo Fang, Sun Zhaodan, Zhang Zhenying, Feng Daxing, He Jilan, Chen Hui, Jin Li, Rota Paul A, Xu Wenbo. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2014 Jan 21384-90 . Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2014 Jan 21384-90 |
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- Page last updated:Nov 17, 2023
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