CDC-Authored Genomics and Precision Health Publications Database
Last data update: Sep 25, 2023. (Total: 4416 publications since 2011)
| Query Trace: Ramos E[original query] |
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| Annual (2023) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)
Kuhn JH , Abe J , Adkins S , Alkhovsky SV , Avi-upanc T , Aylln MA , Bahl J , Balkema-Buschmann A , Ballinger MJ , Kumar Baranwal V , Beer M , Bejerman N , Bergeron , Biedenkopf N , Blair CD , Blasdell KR , Blouin AG , Bradfute SB , Briese T , Brown PA , Buchholz UJ , Buchmeier MJ , Bukreyev A , Burt F , Bttner C , Calisher CH , Cao M , Casas I , Chandran K , Charrel RN , Kumar Chaturvedi K , Chooi KM , Crane A , Dal B E , Carlos de la Torre J , de Souza WM , de Swart RL , Debat H , Dheilly NM , Di Paola N , Di Serio F , Dietzgen RG , Digiaro M , Drexler JF , Duprex WP , Drrwald R , Easton AJ , Elbeaino T , Ergnay K , Feng G , Firth AE , Fooks AR , Formenty PBH , Freitas-Asta J , Gago-Zachert S , Laura Garca M , Garca-Sastre A , Garrison AR , Gaskin TR , Gong W , Gonzalez JJ , de Bellocq J , Griffiths A , Groschup MH , Gnther I , Gnther S , Hammond J , Hasegawa Y , Hayashi K , Hepojoki J , Higgins CM , Hong S , Horie M , Hughes HR , Hume AJ , Hyndman TH , Ikeda K , Jing D , Jonson GB , Junglen S , Klempa B , Klingstrm J , Kond H , Koonin EV , Krupovic M , Kubota K , Kurath G , Laenen L , Lambert AJ , L J , Li JM , Liu R , Lukashevich IS , MacDiarmid RM , Maes P , Marklewitz M , Marshall SH , Marzano SL , McCauley JW , Mirazimi A , Mhlberger E , Nabeshima T , Naidu R , Natsuaki T , Navarro B , Navarro JA , Neriya Y , Netesov SV , Neumann G , Nowotny N , Nunes MRT , Ochoa-Corona FM , Okada T , Palacios G , Palls V , Papa A , Paraskevopoulou S , Parrish CR , Pauvolid-Corra A , Pawska JT , Prez DR , Pfaff F , Plemper RK , Postler TS , Rabbidge LO , Radoshitzky SR , Ramos-Gonzlez PL , Rehanek M , Resende RO , Reyes CA , Rodrigues TCS , Romanowski V , Rubbenstroth D , Rubino L , Runstadler JA , Sabanadzovic S , Sadiq S , Salvato MS , Sasaya T , Schwemmle M , Sharpe SR , Shi M , Shimomoto Y , Kavi Sidharthan V , Sironi M , Smither S , Song JW , Spann KM , Spengler JR , Stenglein MD , Takada A , Takeyama S , Tatara A , Tesh RB , Thornburg NJ , Tian X , Tischler ND , Tomitaka Y , Tomonaga K , Tordo N , Tu C , Turina M , Tzanetakis IE , Maria Vaira A , van den Hoogen B , Vanmechelen B , Vasilakis N , Verbeek M , von Bargen S , Wada J , Wahl V , Walker PJ , Waltzek TB , Whitfield AE , Wolf YI , Xia H , Xylogianni E , Yanagisawa H , Yano K , Ye G , Yuan Z , Zerbini FM , Zhang G , Zhang S , Zhang YZ , Zhao L , kland AL . J Gen Virol 2023 104 (8) |
| 2022 taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales.
Kuhn JH , Adkins S , Alkhovsky SV , Avi-upanc T , Aylln MA , Bahl J , Balkema-Buschmann A , Ballinger MJ , Bandte M , Beer M , Bejerman N , Bergeron , Biedenkopf N , Bigarr L , Blair CD , Blasdell KR , Bradfute SB , Briese T , Brown PA , Bruggmann R , Buchholz UJ , Buchmeier MJ , Bukreyev A , Burt F , Bttner C , Calisher CH , Candresse T , Carson J , Casas I , Chandran K , Charrel RN , Chiaki Y , Crane A , Crane M , Dacheux L , B ED , delaTorre JC , deLamballerie X , deSouza WM , deSwart RL , Dheilly NM , DiPaola N , DiSerio F , Dietzgen RG , Digiaro M , Drexler JF , Duprex WP , Drrwald R , Easton AJ , Elbeaino T , Ergnay K , Feng G , Feuvrier C , Firth AE , Fooks AR , Formenty PBH , Freitas-Asta J , Gago-Zachert S , Garca ML , Garca-Sastre A , Garrison AR , Godwin SE , Gonzalez JJ , deBellocq JG , Griffiths A , Groschup MH , Gnther S , Hammond J , Hepojoki J , Hierweger MM , Hong S , Horie M , Horikawa H , Hughes HR , Hume AJ , Hyndman TH , Jing D , Jonson GB , Junglen S , Kadono F , Karlin DG , Klempa B , Klingstrm J , Koch MC , Kond H , Koonin EV , Krsov J , Krupovic M , Kubota K , Kuzmin IV , Laenen L , Lambert AJ , L J , Li JM , Lieffrig F , Lukashevich IS , Luo D , Maes P , Marklewitz M , Marshall SH , Marzano SL , McCauley JW , Mirazimi A , Mohr PG , Moody NJG , Morita Y , Morrison RN , Mhlberger E , Naidu R , Natsuaki T , Navarro JA , Neriya Y , Netesov SV , Neumann G , Nowotny N , Ochoa-Corona FM , Palacios G , Pallandre L , Palls V , Papa A , Paraskevopoulou S , Parrish CR , Pauvolid-Corra A , Pawska JT , Prez DR , Pfaff F , Plemper RK , Postler TS , Pozet F , Radoshitzky SR , Ramos-Gonzlez PL , Rehanek M , Resende RO , Reyes CA , Romanowski V , Rubbenstroth D , Rubino L , Rumbou A , Runstadler JA , Rupp M , Sabanadzovic S , Sasaya T , Schmidt-Posthaus H , Schwemmle M , Seuberlich T , Sharpe SR , Shi M , Sironi M , Smither S , Song JW , Spann KM , Spengler JR , Stenglein MD , Takada A , Tesh RB , Tkov J , Thornburg NJ , Tischler ND , Tomitaka Y , Tomonaga K , Tordo N , Tsunekawa K , Turina M , Tzanetakis IE , Vaira AM , vandenHoogen B , Vanmechelen B , Vasilakis N , Verbeek M , vonBargen S , Wada J , Wahl V , Walker PJ , Whitfield AE , Williams JV , Wolf YI , Yamasaki J , Yanagisawa H , Ye G , Zhang YZ , kland AL . Arch Virol 2022 167 (12) 2857-2906 |
| A Partially Multiplexed HIV Drug Resistance (HIVDR) Assay for Monitoring HIVDR Mutations of the Protease, Reverse-Transcriptase (PRRT), and Integrase (INT).
DeVos J , McCarthy K , Sewe V , Akinyi G , Junghae M , Opollo V , Nouhin J , Shafer R , Zeh C , Ramos A , Alexander H , Chang J . Microbiol Spectr 2022 10 (3) e0177621 |
| VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data.
Wagner DD , Marine RL , Ramos E , Ng TFF , Castro CJ , Okomo-Adhiambo M , Harvey K , Doho G , Kelly R , Jain Y , Tatusov RL , Silva H , Rota PA , Khan AN , Oberste MS . Microbiol Spectr 2022 10 (2) e0256421 
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| Web-Based Genome Analysis of Bacterial Meningitis Pathogens for Public Health Applications Using the Bacterial Meningitis Genomic Analysis Platform (BMGAP).
Buono SA , Kelly RJ , Topaz N , Retchless AC , Silva H , Chen A , Ramos E , Doho G , Khan AN , Okomo-Adhiambo MA , Hu F , Marasini D , Wang X . Front Genet 2020 11 601870 |
| 2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales.
Kuhn JH , Adkins S , Alioto D , Alkhovsky SV , Amarasinghe GK , Anthony SJ , Avi-upanc T , Aylln MA , Bahl J , Balkema-Buschmann A , Ballinger MJ , Bartonika T , Basler C , Bavari S , Beer M , Bente DA , Bergeron , Bird BH , Blair C , Blasdell KR , Bradfute SB , Breyta R , Briese T , Brown PA , Buchholz UJ , Buchmeier MJ , Bukreyev A , Burt F , Buzkan N , Calisher CH , Cao M , Casas I , Chamberlain J , Chandran K , Charrel RN , Chen B , Chiumenti M , Choi IR , Clegg JCS , Crozier I , daGraa JV , DalB E , Dvila AMR , delaTorre JC , deLamballerie X , deSwart RL , DiBello PL , DiPaola N , DiSerio F , Dietzgen RG , Digiaro M , Dolja VV , Dolnik O , Drebot MA , Drexler JF , Drrwald R , Dufkova L , Dundon WG , Duprex WP , Dye JM , Easton AJ , Ebihara H , Elbeaino T , Ergnay K , Fernandes J , Fooks AR , Formenty PBH , Forth LF , Fouchier RAM , Freitas-Asta J , Gago-Zachert S , Go GF , Garca ML , Garca-Sastre A , Garrison AR , Gbakima A , Goldstein T , Gonzalez JJ , Griffiths A , Groschup MH , Gnther S , Guterres A , Hall RA , Hammond J , Hassan M , Hepojoki J , Hepojoki S , Hetzel U , Hewson R , Hoffmann B , Hongo S , Hper D , Horie M , Hughes HR , Hyndman TH , Jambai A , Jardim R , Jing D , Jin Q , Jonson GB , Junglen S , Karada S , Keller KE , Klempa B , Klingstrm J , Kobinger G , Kond H , Koonin EV , Krupovic M , Kurath G , Kuzmin IV , Laenen L , Lamb RA , Lambert AJ , Langevin SL , Lee B , Lemos ERS , Leroy EM , Li D , L J , Liang M , Li W , Li Y , Lukashevich IS , Maes P , MarcieldeSouza W , Marklewitz M , Marshall SH , Martelli GP , Martin RR , Marzano SL , Massart S , McCauley JW , Mielke-Ehret N , Minafra A , Minutolo M , Mirazimi A , Mhlbach HP , Mhlberger E , Naidu R , Natsuaki T , Navarro B , Navarro JA , Netesov SV , Neumann G , Nowotny N , Nunes MRT , Nylund A , kland AL , Oliveira RC , Palacios G , Pallas V , Plyi B , Papa A , Parrish CR , Pauvolid-Corra A , Pawska JT , Payne S , Prez DR , Pfaff F , Radoshitzky SR , Rahman AU , Ramos-Gonzlez PL , Resende RO , Reyes CA , Rima BK , Romanowski V , RoblesLuna G , Rota P , Rubbenstroth D , Runstadler JA , Ruzek D , Sabanadzovic S , Salt J , Sall AA , Salvato MS , Sarpkaya K , Sasaya T , Schwemmle M , Shabbir MZ , Sh X , Sh Z , Shirako Y , Simmonds P , irmarov J , Sironi M , Smither S , Smura T , Song JW , Spann KM , Spengler JR , Stenglein MD , Stone DM , Strakov P , Takada A , Tesh RB , Thornburg NJ , Tomonaga K , Tordo N , Towner JS , Turina M , Tzanetakis I , Ulrich RG , Vaira AM , vandenHoogen B , Varsani A , Vasilakis N , Verbeek M , Wahl V , Walker PJ , Wang H , Wang J , Wang X , Wang LF , Wi T , Wells H , Whitfield AE , Williams JV , Wolf YI , W Z , Yang X , Yng X , Yu X , Yutin N , Zerbini FM , Zhang T , Zhang YZ , Zhou G , Zhou X . Arch Virol 2020 165 (12) 3023-3072 |
| Drug resistance mutations among South African children living with HIV on WHO-recommended ART regimens.
Hackett S , Teasdale CA , Pals S , Muttiti A , Mogashoa M , Chang J , Zeh C , Ramos A , Rivadeneira ED , DeVos J , Sleeman K , Abrams EJ . Clin Infect Dis 2020 73 (7) e2217-e2225 |
| Understanding the Emergence of Multidrug-Resistant Candida : Using Whole-Genome Sequencing to Describe the Population Structure of Candida haemulonii Species Complex.
Gade L , Munoz JF , Sheth M , Wagner D , Berkow EL , Forsberg K , Jackson BR , Ramos-Castro R , Escandon P , Dolande M , Ben-Ami R , Espinosa-Bode A , Caceres DH , Lockhart SR , Cuomo CA , Litvintseva AP . Front Genet 2020 11 554 |
| The effect of variant interference on de novo assembly for viral deep sequencing.
Castro CJ , Marine RL , Ramos E , Ng TFF . BMC Genomics 2020 21 (1) 421 |
| Zika Virus Surveillance at the Human-Animal Interface in West-Central Brazil, 2017-2018.
Pauvolid-Correa A , GoncalvesDias H , MarinaSiqueiraMaia L , Porfirio G , OliveiraMorgado T , Sabino-Santos G , HelenaSantaRita P , TeixeiraGomesBarreto W , CarvalhodeMacedo G , MarinhoTorres J , ArrudaGimenesNantes W , MartinsSantos F , OliveiradeAssis W , CastroRucco A , MamoruDosSantosYui R , BoscoVilelaCampos J , RodriguesLeandro ESilvaR , daSilvaFerreira R , AparecidodaSilvaNeves N , CharllesdeSouzaCosta M , RamosMartins L , MarquesdeSouza E , DosSantosCarvalho M , GoncalvesLima M , deCassiaGoncalvesAlves F , HumbertoGuimaraesRiquelme-Junior L , LuizBatistaFigueiro L , FernandesGomesdeSantana M , GustavoRodriguesOliveiraSantos L , SerraMedeiros S , LopesSeino L , HimeMiranda E , HenriqueRezendeLinhares J , deOliveiraSantos V , AlmeidadaSilva S , AraujoLucio K , SilvaGomes V , deAraujoOliveira A , DosSantosSilva J , deAlmeidaMarques W , SchaferMarques M , JuniorFrancadeBarros J , Campos L , Couto-Lima D , CoutinhoNetto C , Strussmann C , Panella N , Hannon E , CristinadeMacedo B , RamosdeAlmeida J , RamosRibeiro K , CarolinaBarrosdeCastro M , PrattaCampos L , PaulaRosaDosSantos A , MarinodeSouza I , deAssisBianchini M , HelenaRamiroCorrea S , OrdonesBaptistaLuz R , DosSantosVieira A , MariadeOliveiraPinto L , Azeredo E , TadeuMoraesFigueiredo L , AugustoFonsecaAlencar J , MariaBarbosadeLima S , MiragliaHerrera H , DezengriniShlessarenko R , BarretoDosSantos F , MariaBispodeFilippis A , Salyer S , Montgomery J , Komar N . Viruses 2019 11 (12) |
| Genomic characterization of Haemophilus influenzae: a focus on the capsule locus.
Potts CC , Topaz N , Rodriguez-Rivera LD , Hu F , Chang HY , Whaley MJ , Schmink S , Retchless AC , Chen A , Ramos E , Doho GH , Wang X . BMC Genomics 2019 20 (1) 733 |
| Taxonomy of the order Mononegavirales: update 2019.
Amarasinghe GK , Ayllon MA , Bao Y , Basler CF , Bavari S , Blasdell KR , Briese T , Brown PA , Bukreyev A , Balkema-Buschmann A , Buchholz UJ , Chabi-Jesus C , Chandran K , Chiapponi C , Crozier I , deSwart RL , Dietzgen RG , Dolnik O , Drexler JF , Durrwald R , Dundon WG , Duprex WP , Dye JM , Easton AJ , Fooks AR , Formenty PBH , Fouchier RAM , Freitas-Astua J , Griffiths A , Hewson R , Horie M , Hyndman TH , Jiang D , Kitajima EW , Kobinger GP , Kondo H , Kurath G , Kuzmin IV , Lamb RA , Lavazza A , Lee B , Lelli D , Leroy EM , Li J , Maes P , Marzano SL , Moreno A , Muhlberger E , Netesov SV , Nowotny N , Nylund A , Okland AL , Palacios G , Palyi B , Paweska JT , Payne SL , Prosperi A , Ramos-Gonzalez PL , Rima BK , Rota P , Rubbenstroth D , Shi M , Simmonds P , Smither SJ , Sozzi E , Spann K , Stenglein MD , Stone DM , Takada A , Tesh RB , Tomonaga K , Tordo N , Towner JS , vandenHoogen B , Vasilakis N , Wahl V , Walker PJ , Wang LF , Whitfield AE , Williams JV , Zerbini FM , Zhang T , Zhang YZ , Kuhn JH . Arch Virol 2019 164 (7) 1967-1980 |
| Whole genome sequencing to characterize capsule locus and predict serogroup of invasive meningococcal isolates.
Marjuki H , Topaz N , Rodriguez-Rivera LD , Ramos E , Potts CC , Chen A , Retchless AC , Doho GH , Wang X . J Clin Microbiol 2018 57 (3) |
| High-Throughput Next Generation Sequencing of Polioviruses.
Montmayeur Anna M, Ng Terry Fei Fan, Schmidt Alexander, Zhao Kun, Magaña Laura, Iber Jane, Castro Christina J, Chen Qi, Henderson Elizabeth, Ramos Edward, Shaw Jing, Tatusov Roman L, Dybdahl-Sissoko Naomi, Endegue-Zanga Marie Claire, Adeniji Johnson A, Oberste M Steven, Burns Cara C.Journal of clinical microbiology 2016 Dec . Journal of clinical microbiology 2016 Dec |
| A molecular sensor to characterize arenavirus envelope glycoprotein cleavage by subtilisin kexin isozyme-1 (SKI-1)/site-1 protease (S1P).
Oppliger Joel, da Palma Joel Ramos, Burri Dominique J, Bergeron Eric, Khatib Abdel-Majid, Spiropoulou Christina F, Pasquato Antonella, Kunz Stefan. Journal of virology 2015 Oct . Journal of virology 2015 Oct |
| ClinGen--the Clinical Genome Resource.
Rehm Heidi L, Berg Jonathan S, Brooks Lisa D, Bustamante Carlos D, Evans James P, Landrum Melissa J, Ledbetter David H, Maglott Donna R, Martin Christa Lese, Nussbaum Robert L, Plon Sharon E, Ramos Erin M, Sherry Stephen T, Watson Michael S, . The New England journal of medicine 2015 372(23) 2235-42 . The New England journal of medicine 2015 372(23) 2235-42 |
| Evaluation of blood collection filter papers for HIV-1 DNA PCR.
Masciotra Silvina, Khamadi Samoel, Bilé Ebi, Puren Adrian, Fonjungo Peter, Nguyen Shon, Girma Mulu, Downing Robert, Ramos Artur, Subbarao Shambavi, Ellenberger Dennis. J. Clin. Virol. 2012 Oct 55(2) 101-6 . J. Clin. Virol. 2012 Oct 55(2) 101-6 |
| Evaluation of a high-throughput diagnostic system for detection of HIV-1 in dried blood spot samples from infants in Mozambique.
Jani Ilesh V, Sabatier Jennifer, Vubil Adolfo, Subbarao Shambavi, Bila Dulce, de Sousa Amina, Mabunda Nédio, Garcia Albert, Skaggs Beth, Ellenberger Dennis, Ramos Artur. J. Clin. Microbiol. 2012 Apr 50(4) 1458-60 . J. Clin. Microbiol. 2012 Apr 50(4) 1458-60 |
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- Page last updated:Sep 25, 2023
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