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Public Health Genomics and Precision Health Knowledge Base (v10.0)
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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)
CDC-Authored Genomics and Precision Health Publications Database
Last data update: Sep 03, 2024
. (Total: 6282 publications)
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Records 1-30 (of 39 Records)
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Qvarnstrom Y[original query]
Evaluation of coccidia DNA in irrigation pond water and wastewater sludge associated with Cyclospora cayetanensis 18S rRNA gene qPCR detections
Hofstetter J , Arfken A ,
Kahler A
,
Qvarnstrom Y , Rodrigues C ,
Mattioli M
.
Microbiol Spectr 2024 e0090624
Genetic characterization and description of Leishmania (Leishmania) ellisi sp. nov.: a new human-infecting species from the USA
Sapp SGH
,
Low R
,
Nine G
,
Nascimento FS
,
Qvarnstrom Y
,
Barratt JLN .
Parasitol Res 2023 123 (1) 52
Simultaneous targeted amplicon deep sequencing and library preparation for a time and cost-effective universal parasite diagnostic sequencing approach
Gondard M
,
Lane M
,
Barratt J
,
Talundzic E
,
Qvarnstrom Y
.
Parasitol Res 2023 122 (12) 3243-3256
The limit of detection of the BioFire FilmArray gastrointestinal panel for the foodborne parasite Cyclospora cayetanensis
Peterson A
,
Richins T
,
Houghton K
,
Mishina M
,
Sharma S
,
Sambhara S
,
Jacobson D
,
Qvarnstrom Y
,
Cama V
.
Diagn Microbiol Infect Dis 2023 107 (2) 116030
Retrospective evaluation of an integrated molecular-epidemiological approach to cyclosporiasis outbreak investigations - United States, 2021
Ahart L
,
Jacobson D
,
Rice M
,
Richins T
,
Peterson A
,
Zheng Y
,
Barratt J
,
Cama V
,
Qvarnstrom Y
,
Montgomery S
,
Straily A
.
Epidemiol Infect 2023 151 e131
Cyclospora cayetanensis comprises at least three species that cause human cyclosporiasis
Barratt JLN
,
Shen J
,
Houghton K
,
Richins T
,
Sapp SGH
,
Cama V
,
Arrowood MJ
,
Straily A
,
Qvarnstrom Y
.
Parasitology 2023 150 (3) 269-285
Genetic characterization of Strongyloides fuelleborni infecting free-roaming African vervets (Chlorocebus aethiops sabaeus) on the Caribbean island of St. Kitts.
Richins T
,
Sapp SGH , Ketzis JK , Willingham AL , Mukaratirwa S ,
Qvarnstrom Y
,
Barratt JLN
.
Int J Parasitol Parasites Wildl 2023 20 153-161
Application of a universal parasite diagnostic test to biological specimens collected from animals.
Lane M
,
Kashani M
,
Barratt JL
,
Qvarnstrom Y
,
Yabsley MJ , Garrett KB , Bradbury RS .
Int J Parasitol Parasites Wildl 2023 20 20-30
Evaluation of various distance computation methods for construction of haplotype-based phylogenies from large MLST dataset.
Jacobson D
,
Zheng Y
,
Plucinski MM
,
Qvarnstrom Y
,
Barratt JLN
.
Mol Phylogenet Evol 2022 177 107608
Assessing an Adaptation of the Universal Parasite Diagnostic Assay for Bloodborne Parasites in a US State Public Health Laboratory.
Clemons B ,
Barratt J
,
Lane M
,
Qvarnstrom Y
,
Teal AE , Zayas G , Madison-Antenucci S .
Am J Trop Med Hyg 2021 106 (2) 671-677
Genotyping Cyclospora cayetanensis from multiple outbreak clusters with an emphasis on a cluster linked to bagged salad mix - United States, 2020.
Barratt J
,
Ahart L
,
Rice M
,
Houghton K
,
Richins T
,
Cama V
,
Arrowood M
,
Qvarnstrom Y
,
Straily A
.
J Infect Dis 2021 225 (12) 2176-2180
Investigation of US Cyclospora cayetanensis outbreaks in 2019 and evaluation of an improved Cyclospora genotyping system against 2019 cyclosporiasis outbreak clusters.
Barratt J
,
Houghton K
,
Richins T
,
Straily A
,
Threlkel R
,
Bera B , Kenneally J , Clemons B , Madison-Antenucci S , Cebelinski E , Whitney BM , Kreil KR ,
Cama V
,
Arrowood MJ ,
Qvarnstrom Y
.
Epidemiol Infect 2021 149 1-39
RPAcan3990: an ultrasensitive recombinase polymerase assay to detect Angiostrongylus cantonensis DNA.
Sears WJ ,
Qvarnstrom Y
,
Nutman TB .
J Clin Microbiol 2021 59 (9) Jcm0118521
AcanR3990 qPCR: a novel, highly sensitive, bioinformatically-informed assay to detect Angiostrongylus cantonensis infections.
Sears WJ ,
Qvarnstrom Y
,
Dahlstrom E , Snook K , Kaluna L , BaláΕΎ V , Feckova B , Šlapeta J , Modry D , Jarvi S , Nutman TB .
Clin Infect Dis 2020 73 (7) e1594-e1600
Evaluation of an ensemble-based distance statistic for clustering MLST datasets using epidemiologically defined clusters of cyclosporiasis.
Nascimento FS
,
Barratt J
,
Houghton K
,
Plucinski M
,
Kelley J
,
Casillas S
,
Bennett CC
,
Snider C , Tuladhar R , Zhang J , Clemons B , Madison-Antenucci S , Russell A , Cebelinski E , Haan J , Robinson T ,
Arrowood MJ
,
Talundzic E
,
Bradbury RS
,
Qvarnstrom Y
.
Epidemiol Infect 2020 148 e172
Development of a workflow for identification of nuclear genotyping markers for Cyclospora cayetanensis.
Houghton KA
,
Lomsadze A ,
Park S
,
Nascimento FS
,
Barratt J
,
Arrowood MJ
,
VanRoey E
,
Talundzic E
,
Borodovsky M ,
Qvarnstrom Y
.
Parasite 2020 27 24
Molecular typing of Cyclospora cayetanensis in produce and clinical samples using targeted enrichment of complete mitochondrial genomes and next-generation sequencing.
Cinar HN , Gopinath G , Murphy HR , Almeria S , Durigan M , Choi D , Jang A , Kim E , Kim R , Choi S , Lee J , Shin Y , Lee J ,
Qvarnstrom Y
,
Benedict TK
,
Bishop HS
,
da Silva A .
Parasit Vectors 2020 13 (1) 122
Mitochondrial Junction Region as Genotyping Marker for Cyclospora cayetanensis.
Nascimento FS
,
Barta JR , Whale J ,
Hofstetter JN
,
Casillas S
,
Barratt J
,
Talundzic E
,
Arrowood MJ
,
Qvarnstrom Y
.
Emerg Infect Dis 2019 25 (7) 1314-1319
Genotyping Genetically Heterogeneous Cyclospora cayetanensis Infections to Complement Epidemiological Case Linkage.
Barratt JLN
,
Park S
,
Nascimento FS
,
Hofstetter J
,
Plucinski M
,
Casillas S
,
Bradbury RS
,
Arrowood MJ
,
Qvarnstrom Y
,
Talundzic E
.
Parasitology 2019 146 (10) 1-33
Evaluation of Multilocus Sequence Typing of Cyclospora cayetanensis based on microsatellite markers.
Hofstetter JN
,
Nascimento FS
,
Park S
,
Casillas S
,
Herwaldt BL
,
Arrowood MJ
,
Qvarnstrom Y
.
Parasite 2019 26 3
Molecular detection and genotyping of pathogenic protozoan parasites in raw and treated water samples from southwest Colombia.
Sanchez C , Lopez MC , Galeano LA ,
Qvarnstrom Y
,
Houghton K
,
Ramirez JD .
Parasit Vectors 2018 11 (1) 563
Purification of Cyclospora cayetanensis oocysts obtained from human stool specimens for whole genome sequencing.
Qvarnstrom Y
,
Wei-Pridgeon Y
,
Van Roey E
,
Park S
,
Srinivasamoorthy G ,
Nascimento FS
,
Moss DM
,
Talundzic E
,
Arrowood MJ
.
Gut Pathog 2018 10 45
Molecular detection of Cyclospora cayetanensis in human stool specimens using UNEX-based DNA extraction and real-time PCR.
Qvarnstrom Y
,
Benedict T
,
Marcet PL
,
Wiegand RE
,
Herwaldt BL
,
da Silva AJ .
Parasitology 2017 145 (7) 1-6
Comparative sequence analysis of Cyclospora cayetanensis apicoplast genomes originating from diverse geographical regions.
Cinar HN ,
Qvarnstrom Y
,
Wei-Pridgeon Y
,
Li W
,
Nascimento FS
,
Arrowood MJ
,
Murphy HR , Jang A , Kim E , Kim R , da Silva A , Gopinath GR .
Parasit Vectors 2016 9 (1) 611
Comparison of Babesia microti Real-Time Polymerase Chain Reaction Assays for Confirmatory Diagnosis of Babesiosis.
Souza SS
,
Bishop HS
,
Sprinkle P
,
Qvarnstrom Y
.
Am J Trop Med Hyg 2016 95 (6) 1413-1416
Evaluation of library preparation methods for Illumina next generation sequencing of small amounts of DNA from foodborne parasites.
Nascimento FS
,
Wei-Pridgeon Y
,
Arrowood MJ
,
Moss D
,
da Silva AJ
,
Talundzic E
,
Qvarnstrom Y
.
J Microbiol Methods 2016 130 23-26
Multilocus Sequence Typing Tool for Cyclospora cayetanensis.
Guo Y
,
Roellig DM
,
Li N
,
Tang K
,
Frace M
,
Ortega Y ,
Arrowood MJ
,
Feng Y ,
Qvarnstrom Y
,
Wang L ,
Moss DM
,
Zhang L ,
Xiao L
.
Emerg Infect Dis 2016 22 (8) 1464-7
Draft Genome Sequences from Cyclospora cayetanensis Oocysts Purified from a Human Stool Sample.
Qvarnstrom Y
,
Wei-Pridgeon Y
,
Li W
,
Nascimento FS
,
Bishop HS
,
Herwaldt BL
,
Moss DM
,
Nayak V
,
Srinivasamoorthy G
,
Sheth M
,
Arrowood MJ
.
Genome Announc 2015 3 (6)
Real-Time Polymerase Chain Reaction Detection of Angiostrongylus cantonensis DNA in Cerebrospinal Fluid from Patients with Eosinophilic Meningitis.
Qvarnstrom Y
,
Xayavong M , Aramburu da Silva AC , Park SY , Whelen AC , Calimlim PS , Sciulli RH , Honda SA , Higa K , Kitsutani P ,
Chea N
,
Heng S , Johnson S , Graeff-Teixeira C ,
Fox LM
,
da Silva AJ .
Am J Trop Med Hyg 2015 94 (1) 176-81
A linear mitochondrial genome of Cyclospora cayetanensis (Eimeriidae, Eucoccidiorida, Coccidiasina, Apicomplexa) suggests the ancestral start position within mitochondrial genomes of eimeriid coccidia.
Ogedengbe ME ,
Qvarnstrom Y
,
da Silva AJ
,
Arrowood MJ
,
Barta JR .
Int J Parasitol 2015 45 (6) 361-5
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Page last reviewed:
Feb 1, 2024
Content source:
Public Health Genomics Branch in the Division of Blood Disorders and Public Health Genomics
,
National Center on Birth Defects and Developmental Disabilities
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