CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Nov 22, 2024. (Total: 6417 publications)

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Records 1-23 (of 23 Records)

Query Trace: Pham CD[original query]
Whole-genome sequencing resolves biochemical misidentification of Neisseria species from urogenital specimens Smith AC , Shrivastava A , Cartee JC , Bélanger M , Sharpe S , Lewis J , Budionno S , Gomez R , Khubbar MK , Pham CD , Gernert KM , Schmerer MW , Raphael BH , Learner ER , Kersh EN , Joseph SJ . J Clin Microbiol 2024 e0070424
Detection of fungal DNA in human body fluids and tissues during a multistate outbreak of fungal meningitis and other infections. Gade L , Scheel CM , Pham CD , Lindsley MD , Iqbal N , Cleveland AA , Whitney AM , Lockhart SR , Brandt ME , Litvintseva AP . Eukaryot Cell 2013 12 (5) 677-83
Novel strain of multidrug non-susceptible Neisseria gonorrhoeae in the USA Reimche JL , Pham CD , Joseph SJ , Hutton S , Cartee JC , Ruan Y , Breaux M , Ivanof C , Joshi A , DeMartino M , Kirby JE , Barbee LA , Kersh EN , Roosevelt KA , Hsu KK . Lancet Infect Dis 2024
Genomic analysis of 1710 surveillance-based Neisseria gonorrhoeae isolates from the USA in 2019 identifies predominant strain types and chromosomal antimicrobial-resistance determinants Reimche JL , Clemons AA , Chivukula VL , Joseph SJ , Schmerer MW , Pham CD , Schlanger K , St Cyr SB , Kersh EN , Gernert KM . Microb Genom 2023 9 (5)
Phylogenomic Comparison of Neisseria gonorrhoeae Causing Disseminated Gonococcal Infections and Uncomplicated Gonorrhea in Georgia, United States. Cartee JC , Joseph SJ , Weston E , Pham CD , Thomas JCth , Schlanger K , St Cyr SB , Farley MM , Moore AE , Tunali AK , Cloud C , Raphael BH . Open Forum Infect Dis 2022 9 (7) ofac247
Characterization of a Neisseria gonorrhoeae Ciprofloxacin panel for an antimicrobial resistant Isolate Bank. Liu H , Tang K , Pham CD , Schmerer M , Kersh EN , Raphael BH . PLoS One 2022 17 (3) e0264149
Phylogenomic analysis reveals persistence of gonococcal strains with reduced-susceptibility to extended-spectrum cephalosporins and mosaic penA-34. Thomas 4th JC , Joseph SJ , Cartee JC , Pham CD , Schmerer MW , Schlanger K , St Cyr SB , Kersh EN , Raphael BH . Nat Commun 2021 12 (1) 3801
Genomic analysis of the predominant strains and antimicrobial resistance determinants within 1479 Neisseria gonorrhoeae isolates from the U.S. Gonococcal Isolate Surveillance Project in 2018. Reimche JL , Chivukula VL , Schmerer MW , Joseph SJ , Pham CD , Schlanger K , St Cyr SB , Weinstock HS , Raphael BH , Kersh EN , Gernert KM . Sex Transm Dis 2021 48 S78-S87
Sustained Transmission of Neisseria gonorrhoeae with High-Level Resistance to Azithromycin, Indianapolis, Indiana 2017-2018. Holderman JL , Thomas JC , Schlanger K , Black JM , Town K , Cyr SB , Pham CD , Kirkcaldy RD . Clin Infect Dis 2021 73 (5) 808-815
Sustained Transmission of Neisseria gonorrhoeae with High-Level Resistance to Azithromycin, in Indianapolis, Indiana, 2017-2018. Holderman JL , Thomas JC , Schlanger K , Black JM , Town K , Cyr SB , Pham CD , Kirkcaldy RD . Clin Infect Dis 2021 73 (5) 808-815
Atypical Mutation in Neisseria gonorrhoeae 23S rRNA Associated with High-Level Azithromycin Resistance. Pham CD , Nash E , Liu H , Schmerer MW , Sharpe S , Woods G , Roland B , Schlanger K , St Cyr SB , Carlson J , Sellers K , Olsen A , Sanon R , Hardin H , Soge OO , Raphael BH , Kersh EN . Antimicrob Agents Chemother 2020 65 (2)
Azithromycin susceptibility of Neisseria gonorrhoeae in the USA in 2017: a genomic analysis of surveillance data. Gernert KM , Seby S , Schmerer MW , Thomas JCth , Pham CD , Cyr SS , Schlanger K , Weinstock H , Shafer WM , Raphael BH , Kersh EN . Lancet Microbe 2020 1 (4) e154-e164
Genomic characterization of Neisseria gonorrhoeae Strains from 2016 United States Sentinel Surveillance Displaying Reduced Susceptibility to Azithromycin. Schmerer MW , Abrams AJ , Seby S , Thomas JC4th , Cartee J , Lucking S , Vidyaprakash E , Pham CD , Sharpe S , Pettus K , St Cyr SB , Torrone EA , Kersh EN , Gernert KM . Antimicrob Agents Chemother 2020 64 (5)
Expanding US Laboratory Capacity for Neisseria gonorrhoeae Antimicrobial Susceptibility Testing and Whole Genome Sequencing through CDC's Antibiotic Resistance Laboratory Network. Kersh EN , Pham CD , Papp JR , Myers R , Steece R , Kubin G , Gautom R , Nash EE , Sharpe S , Gernert KM , Schmerer M , Raphael BH , Henning T , Gaynor AM , Soge O , Schlanger K , Kirkcaldy RD , St Cyr SB , Torrone EA , Bernstein K , Weinstock H . J Clin Microbiol 2020 58 (4)
Emergence of Neisseria gonorrhoeae Strains Harboring a Novel Combination of Azithromycin-Attenuating Mutations. Pham CD , Sharpe S , Schlanger K , St Cyr S , Holderman J , Steece R , Soge OO , Masinde G , Arno J , Schmerer M , Kersh EN . Antimicrob Agents Chemother 2019 63 (4)
Evidence of Recent Genomic Evolution in Gonococcal Strains with Decreased Susceptibility to Cephalosporins or Azithromycin in the United States, 2014-2016. Thomas JC , Seby S , Abrams AJ , Cartee J , Lucking S , Vidyaprakash E , Schmerer M , Pham CD , Hong J , Torrone E , St Cyr S , Shafer WM , Bernstein K , Kersh EN , Gernert KM . J Infect Dis 2019 220 (2) 294-305
Mechanistic Basis for Decreased Antimicrobial Susceptibility in a Clinical Isolate of Neisseria gonorrhoeae Possessing a Mosaic-Like mtr Efflux Pump Locus. Rouquette-Loughlin CE , Reimche JL , Balthazar JT , Dhulipala V , Gernert KM , Kersh EN , Pham CD , Pettus K , Abrams AJ , Trees DL , St Cyr S , Shafer WM . mBio 2018 9 (6)
Population Genetic Analysis Reveals a High Genetic Diversity in the Brazilian Cryptococcus gattii VGII Population and Shifts the Global Origin from the Amazon Rainforest to the Semi-arid Desert in the Northeast of Brazil. Souto AC , Bonfietti LX , Ferreira-Paim K , Trilles L , Martins M , Ribeiro-Alves M , Pham CD , Martins L , Dos Santos W , Chang M , Brito-Santos F , Santos DC , Fortes S , Lockhart SR , Wanke B , Melhem MS , Lazera MS , Meyer W . PLoS Negl Trop Dis 2016 10 (8) e0004885
Malignant Transformation of Hymenolepis nana in a Human Host. Muehlenbachs A , Bhatnagar J , Agudelo CA , Hidron A , Eberhard ML , Mathison BA , Frace MA , Ito A , Metcalfe MG , Rollin DC , Visvesvara GS , Pham CD , Jones TL , Greer PW , Velez Hoyos A , Olson PD , Diazgranados LR , Zaki SR . N Engl J Med 2015 373 (19) 1845-52
Development of a Multi-Locus Sequence Typing System for Medically Relevant Bipolaris Species. Pham CD , Purfield AE , Fader R , Pascoe N , Lockhart SR . J Clin Microbiol 2015 53 (10) 3239-46
Molecular mechanisms of fluconazole resistance in Candida parapsilosis isolates from a U.S. surveillance system. Grossman NT , Pham CD , Cleveland AA , Lockhart SR . Antimicrob Agents Chemother 2014 59 (2) 1030-7
The role of FKS mutations in C. glabrata: MIC values, echinocandin resistance and multidrug resistance Pham CD , Iqbal N , Bolden CB , Kuykendall RJ , Harrison LH , Farley MM , Schaffner W , Beldavs ZG , Chiller TM , Park BJ , Cleveland AA , Lockhart SR . Antimicrob Agents Chemother 2014 58 (8) 4690-6
Development of a Luminex-based multiplex assay for detection of mutations conferring resistance to echinocandins in Candida glabrata Pham CD , Bolden CB , Kuykendall RJ , Lockhart SR . J Clin Microbiol 2013 52 (3) 790-5