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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Apr 28, 2025. (Total: 6660 publications)
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Records 1-28 (of 28 Records)
Query Trace: Otieno K[original query]
Machine learning to improve HIV screening using routine data in Kenya
Friedman JD , Mwangi JM , Muthoka KJ , Otieno BA , Odhiambo JO , Miruka FO , Nyagah LM , Mwele PM , Obat EO , Omoro GO , Ndisha MM , Kimanga DO .
J Int AIDS Soc 2025 28 (4) e26436
Spatio-temporal distribution of rhinovirus types in Kenya: a retrospective analysis, 2014
Morobe JM , Kamau E , Luka MM , Murunga N , Lewa C , Mutunga M , Bigogo G , Otieno N , Nyawanda B , Onyango C , Nokes DJ , Agoti CN , Munywoki PK .
Sci Rep 2024 14 (1) 22298 type
Characterization of avian influenza viruses detected in Kenyan live bird markets and wild bird habitats reveal genetically diverse subtypes and high proportion of A(H9N2), 2018-2020
Munyua P , Osoro E , Jones J , Njogu G , Yang G , Hunsperger E , Szablewski CM , Njoroge R , Marwanga D , Oyas H , Andagalu B , Ndanyi R , Otieno N , Obanda V , Nasimiyu C , Njagi O , DaSilva J , Jang Y , Barnes J , Emukule GO , Onyango CO , Davis CT .
Viruses 2024 16 (9) type
Genotypic analysis of RTS,S/AS01(E) malaria vaccine efficacy against parasite infection as a function of dosage regimen and baseline malaria infection status in children aged 5-17 months in Ghana and Kenya: a longitudinal phase 2b randomised controlled trial
Juraska M , Early AM , Li L , Schaffner SF , Lievens M , Khorgade A , Simpkins B , Hejazi NS , Benkeser D , Wang Q , Mercer LD , Adjei S , Agbenyega T , Anderson S , Ansong D , Bii DK , Buabeng PBY , English S , Fitzgerald N , Grimsby J , Kariuki SK , Otieno K , Roman F , Samuels AM , Westercamp N , Ockenhouse CF , Ofori-Anyinam O , Lee CK , MacInnis BL , Wirth DF , Gilbert PB , Neafsey DE .
Lancet Infect Dis 2024 type
An updated framework for SARS-CoV-2 variants reflects the unpredictability of viral evolution
Subissi L , Otieno JR , Worp N , Attar Cohen H , Oude Munnink BB , Abu-Raddad LJ , Alm E , Barakat A , Barclay WS , Bhiman JN , Caly L , Chand M , Chen M , Cullinane A , de Oliveira T , Drosten C , Druce J , Effler P , El Masry I , Faye A , Ghedin E , Grant R , Haagmans BL , Happi C , Herring BL , Hodcroft EB , Ikejezie J , Katawera V , Kassamali ZA , Leo YS , Leung GM , Kondor RJ , Marklewitz M , Mendez-Rico J , Melhem NM , Munster V , Nahapetyan K , Naindoo D , Oh DY , Peacock TP , Peiris M , Peng Z , Poon LLM , Rambaut A , Saha S , Shen Y , Siqueira MM , Volz E , Tessema SK , Thiel V , Triki H , van der Werf S , von Eije K , Cunningham J , Koopmans MPG , von Gottberg A , Agrawal A , Van Kerkhove MD .
Nat Med 2024 type
Innate immune activation restricts priming and protective efficacy of the radiation-attenuated PfSPZ malaria vaccine
Senkpeil L , Bhardwaj J , Little MR , Holla P , Upadhye A , Fusco EM , Swanson Ii PA , Wiegand RE , Macklin MD , Bi K , Flynn BJ , Yamamoto A , Gaskin EL , Sather DN , Oblak AL , Simpson E , Gao H , Haining WN , Yates KB , Liu X , Murshedkar T , Richie TL , Sim BKL , Otieno K , Kariuki S , Xuei X , Liu Y , Polidoro RB , Hoffman SL , Oneko M , Steinhardt LC , Schmidt NW , Seder RA , Tran TM .
JCI Insight 2024 type
Phylogeography and reassortment patterns of human influenza A viruses in sub-Saharan Africa
Owuor DC , de Laurent ZR , Oketch JW , Murunga N , Otieno JR , Nabakooza G , Chaves SS , Nokes DJ , Agoti CN .
Sci Rep 2024 14 (1) 18987 type
When to update COVID-19 vaccine composition.
Grant R , Sacks JA , Abraham P , Chunsuttiwat S , Cohen C , Figueroa JP , Fleming T , Fine P , Goldblatt D , Hasegawa H , MacIntrye CR , Memish ZA , Miller E , Nishioka S , Sall AA , Sow S , Tomori O , Wang Y , Van Kerkhove MD , Wambo MA , Cohen HA , Mesfin S , Otieno JR , Subissi L , Briand S , Wentworth DE , Subbarao K .
Nat Med 2023 29 (4) 776-780 type
New nomenclature for mpox (monkeypox) and monkeypox virus clades.
Ulaeto D , Agafonov A , Burchfield J , Carter L , Happi C , Jakob R , Krpelanova E , Kuppalli K , Lefkowitz EJ , Mauldin MR , de Oliveira T , Onoja B , Otieno J , Rambaut A , Subissi L , Yinka-Ogunleye A , Lewis RF .
Lancet Infect Dis 2023 23 (3) 273-275
Novel application of one-step pooled molecular testing and maximum likelihood approaches to estimate the prevalence of malaria parasitaemia among rapid diagnostic test negative samples in western Kenya.
Shah MP , Chebore W , Lyles RH , Otieno K , Zhou Z , Plucinski M , Waller LA , Odongo W , Lindblade KA , Kariuki S , Samuels AM , Desai M , Mitchell RM , Shi YP .
Malar J 2022 21 (1) 319
Temporal trends in molecular markers of drug resistance in Plasmodium falciparum in human blood and profiles of corresponding resistant markers in mosquito oocysts in Asembo, western Kenya.
Zhou Z , Gimnig JE , Sergent SB , Liu Y , Abong'o B , Otieno K , Chebore W , Shah MP , Williamson J , Ter Kuile FO , Hamel MJ , Kariuki S , Desai M , Samuels AM , Walker ED , Shi YP .
Malar J 2022 21 (1) 265
Diagnostic performance of loop-mediated isothermal amplification and ultra-sensitive rapid diagnostic tests for malaria screening among pregnant women in Kenya.
Samuels AM , Towett O , Seda B , Wiegand RE , Otieno K , Chomba M , Lucchi N , Ljolje D , Schneider K , Gt P , Kwambai TK , Slutsker L , TerKuile FO , Kariuki SK .
J Infect Dis 2022 226 (4) 696-707
Effect of Time Since Death on Multipathogen Molecular Test Results of Postmortem Specimens Collected Using Minimally Invasive Tissue Sampling Techniques.
Dawa J , Walong E , Onyango C , Mathaiya J , Muturi P , Bunei M , Ochieng W , Barake W , Seixas JN , Mayieka L , Ochieng M , Omballa V , Lidechi S , Hunsperger E , Otieno NA , Ritter JM , Widdowson MA , Diaz MH , Winchell JM , Martines RB , Zaki SR , Chaves SS .
Clin Infect Dis 2021 73 S360-s367 type
Characterizing the Countrywide Epidemic Spread of Influenza A(H1N1)pdm09 Virus in Kenya between 2009 and 2018.
Owuor DC , de Laurent ZR , Kikwai GK , Mayieka LM , Ochieng M , Müller NF , Otieno NA , Emukule GO , Hunsperger EA , Garten R , Barnes JR , Chaves SS , Nokes DJ , Agoti CN .
Viruses 2021 13 (10)
Development of a new barcode-based, multiplex-PCR, next-generation-sequencing assay and data processing and analytical pipeline for multiplicity of infection detection of Plasmodium falciparum.
Mitchell RM , Zhou Z , Sheth M , Sergent S , Frace M , Nayak V , Hu B , Gimnig J , Ter Kuile F , Lindblade K , Slutsker L , Hamel MJ , Desai M , Otieno K , Kariuki S , Vigfusson Y , Shi YP .
Malar J 2021 20 (1) 92 type
Western Kenyan Anopheles gambiae showing intense permethrin resistance harbour distinct microbiota.
Omoke D , Kipsum M , Otieno S , Esalimba E , Sheth M , Lenhart A , Njeru EM , Ochomo E , Dada N .
Malar J 2021 20 (1) 77 type
Assessment of molecular markers of anti-malarial drug resistance among children participating in a therapeutic efficacy study in western Kenya.
Chebore W , Zhou Z , Westercamp N , Otieno K , Shi YP , Sergent SB , Rondini KA , Svigel SS , Guyah B , Udhayakumar V , Halsey ES , Samuels AM , Kariuki S .
Malar J 2020 19 (1) 291 type
Rotavirus group A genotype circulation patterns across Kenya before and after nationwide vaccine introduction, 2010-2018.
Mwanga MJ , Owor BE , Ochieng JB , Ngama MH , Ogwel B , Onyango C , Juma J , Njeru R , Gicheru E , Otieno GP , Khagayi S , Agoti CN , Bigogo GM , Omore R , Addo OY , Mapaseka S , Tate JE , Parashar UD , Hunsperger E , Verani JR , Breiman RF , Nokes DJ .
BMC Infect Dis 2020 20 (1) 504 type
Genetic characterization of influenza A(H3N2) viruses circulating in coastal Kenya, 2009-2017.
Owuor DC , Ngoi JM , Otieno JR , Otieno GP , Nyasimi FM , Nyiro JU , Agoti CN , Chaves SS , Nokes DJ .
Influenza Other Respir Viruses 2020 14 (3) 320-330 type
Association of maternal KIR gene content polymorphisms with reduction in perinatal transmission of HIV-1.
Omosun YO , Blackstock AJ , Williamson J , van Eijk AM , Ayisi J , Otieno J , Lal RB , Ter Kuile FO , Slutsker L , Shi YP .
PLoS One 2018 13 (1) e0191733 type
Assessment of submicroscopic infections and gametocyte carriage of Plasmodium falciparum during peak malaria transmission season in a community-based cross-sectional survey in western Kenya, 2012.
Zhou Z , Mitchell RM , Kariuki S , Odero C , Otieno P , Otieno K , Onyona P , Were V , Wiegand RE , Gimnig JE , Walker ED , Desai M , Shi YP .
Malar J 2016 15 (1) 421
Molecular Epidemiology and Transmission Dynamics of Recent and Long-Term HIV-1 Infections in Rural Western Kenya.
Zeh C , Inzaule SC , Ondoa P , Nafisa LG , Kasembeli A , Otieno F , Vandenhoudt H , Amornkul PN , Mills LA , Nkengasong JN .
PLoS One 2016 11 (2) e0147436
Genetic Diversity and Protective Efficacy of the RTS,S/AS01 Malaria Vaccine.
Neafsey DE , Juraska M , Bedford T , Benkeser D , Valim C , Griggs A , Lievens M , Abdulla S , Adjei S , Agbenyega T , Agnandji ST , Aide P , Anderson S , Ansong D , Aponte JJ , Asante KP , Bejon P , Birkett AJ , Bruls M , Connolly KM , D'Alessandro U , Dobano C , Gesase S , Greenwood B , Grimsby J , Tinto H , Hamel MJ , Hoffman I , Kamthunzi P , Kariuki S , Kremsner PG , Leach A , Lell B , Lennon NJ , Lusingu J , Marsh K , Martinson F , Molel JT , Moss EL , Njuguna P , Ockenhouse CF , Ragama Ogutu B , Otieno W , Otieno L , Otieno K , Owusu-Agyei S , Park DJ , Pellé K , Robbins D , Russ C , Ryan EM , Sacarlal J , Sogoloff B , Sorgho H , Tanner M , Theander T , Valea I , Volkman SK , Yu Q , Lapierre D , Birren BW , Gilbert PB , Wirth DF .
N Engl J Med 2015 373 (21) 2025-2037
Assessment of molecular markers for anti-malarial drug resistance after the introduction and scale-up of malaria control interventions in western Kenya.
Shah M , Omosun Y , Lal A , Odero C , Gatei W , Otieno K , Gimnig JE , Kuile Fter , Hawley WA , Nahlen B , Kariuki S , Walker E , Slutsker L , Hamel M , Shi YP .
Malar J 2015 14 (75) 75
A Quality Control Program within a Clinical Trial Consortium for PCR Protocols To Detect Plasmodium Species
Taylor SM , Mayor A , Mombo-Ngoma G , Kenguele HM , Ouedraogo S , Ndam NT , Mkali H , Mwangoka G , Valecha N , Singh JP , Clark MA , Verweij JJ , Adegnika AA , Severini C , Menegon M , Macete E , Menendez C , Cistero P , Njie F , Affara M , Otieno K , Kariuki S , Ter Kuile FO , Meshnick SR .
J Clin Microbiol 2014 52 (6) 2144-9
Rapid spread and diversification of respiratory syncytial virus genotype ON1, Kenya
Agoti CN , Otieno JR , Gitahi CW , Cane PA , Nokes DJ .
Emerg Infect Dis 2014 20 (6) 950-9
Differential association of gene content polymorphisms of killer cell immunoglobulin-like receptors with placental malaria in HIV- and HIV+ mothers.
Omosun YO , Blackstock AJ , Gatei W , Hightower A , van Eijk AM , Ayisi J , Otieno J , Lal RB , Steketee R , Nahlen B , Ter Kuile FO , Slutsker L , Shi YP .
PLoS One 2012 7 (6) e38617
Temporal trends of sulphadoxine-pyrimethamine (SP) drug-resistance molecular markers in Plasmodium falciparum parasites from pregnant women in western Kenya.
Iriemenam NC , Shah M , Gatei W , van Eijk AM , Ayisi J , Kariuki S , Vanden Eng J , Owino SO , Lal AA , Omosun YO , Otieno K , Desai M , Ter Kuile FO , Nahlen B , Moore J , Hamel MJ , Ouma P , Slutsker L , Shi YP .
Malar J 2012 11 (1) 134
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