CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Jan 13, 2025. (Total: 6490 publications)

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Records 1-30 (of 41 Records)

Query Trace: Metcalf B[original query]
Molecular epidemiology of invasive group B Streptococcus in South Africa, 2019-2020 Ntozini B , Walaza S , Metcalf B , Hazelhurst S , de Gouveia L , Meiring S , Mogale D , Mtshali S , Ismail A , Ndlangisa K , Du Plessis M , Quan V , Chochua S , McGee L , von Gottberg A , Wolter N . J Infect Dis 2024
Genomic cluster formation among invasive group A streptococcal infections in the USA: a whole-genome sequencing and population-based surveillance study Li Y , Rivers J , Mathis S , Li Z , Chochua S , Metcalf BJ , Beall B , McGee L . Lancet Microbe 2024 100927
Impact of pneumococcal conjugate vaccines on invasive pneumococcal disease-causing lineages among South African children Lekhuleni C , Ndlangisa K , Gladstone RA , Chochua S , Metcalf BJ , Li Y , Kleynhans J , de Gouveia L , Hazelhurst S , Ferreira ADS , Skosana H , Walaza S , Quan V , Meiring S , Hawkins PA , McGee L , Bentley SD , Cohen C , Lo SW , von Gottberg A , du Plessis M . Nat Commun 2024 15 (1) 8401
Increased proportions of invasive pneumococcal disease cases amongs adults experiencing homelessness sets stage for new serotype 4 capsular-switch recombinant Beall B , Chochua S , Metcalf B , Lin W , Tran T , Li Z , Li Y , Bentz ML , Sheth M , Osis G , McGee L . J Infect Dis 2024
Infectious disease surveillance needs for the United States: lessons from Covid-19 Lipsitch M , Bassett MT , Brownstein JS , Elliott P , Eyre D , Grabowski MK , Hay JA , Johansson MA , Kissler SM , Larremore DB , Layden JE , Lessler J , Lynfield R , MacCannell D , Madoff LC , Metcalf CJE , Meyers LA , Ofori SK , Quinn C , Bento AI , Reich NG , Riley S , Rosenfeld R , Samore MH , Sampath R , Slayton RB , Swerdlow DL , Truelove S , Varma JK , Grad YH . Front Public Health 2024 12 1408193
A novel invasive Streptococcus pyogenes variant sublineage derived through recombinational replacement of the emm12 genomic region Unoarumhi Y , Davis ML , Rowe LA , Mathis S , Li Z , Chochua S , Li Y , McGee L , Metcalf BJ , Lee JS , Beall B . Sci Rep 2023 13 (1) 21510
Expansion of invasive group A streptococcus M1(uk) lineage in active bacterial core surveillance, United States, 2019‒2021 Li Y , Rivers J , Mathis S , Li Z , Chochua S , Metcalf BJ , Beall B , Onukwube J , Gregory CJ , McGee L . Emerg Infect Dis 2023 29 (10) 2116-2120
Benchmark datasets for SARS-CoV-2 surveillance bioinformatics. Xiaoli L , Hagey JV , Park DJ , Gulvik CA , Young EL , Alikhan NF , Lawsin A , Hassell N , Knipe K , Oakeson KF , Retchless AC , Shakya M , Lo CC , Chain P , Page AJ , Metcalf BJ , Su M , Rowell J , Vidyaprakash E , Paden CR , Huang AD , Roellig D , Patel K , Winglee K , Weigand MR , Katz LS . PeerJ 2022 10 e13821
Invasive Group A Streptococcal Penicillin Binding Protein 2× Variants Associated with Reduced Susceptibility to β-Lactam Antibiotics in the United States, 2015-2021. Chochua S , Metcalf B , Li Z , Mathis S , Tran T , Rivers J , Fleming-Dutra KE , Li Y , McGee L , Beall B . Antimicrob Agents Chemother 2022 66 (9) e0080222
Continued Increase of Erythromycin- and Clindamycin-Nonsusceptibility among Invasive Group A Streptococci Driven by Genomic Clusters, USA, 2018-2019. Li Y , Rivers J , Mathis S , Li Z , McGee L , Chochua S , Metcalf BJ , Fleming-Dutra KE , Nanduri SA , Beall B . Clin Infect Dis 2022 76 (3) e1266-e1269
Cluster Transmission Drives Invasive Group A Streptococcus Disease Within the US and is Focused on Communities Experiencing Disadvantage. Metcalf B , Nanduri S , Chochua S , Li Y , Fleming-Dutra K , McGee L , Beall B . J Infect Dis 2022 226 (3) 546-553
Invasive pneumococcal disease clusters disproportionally impact persons experiencing homelessness, injecting drug users, and the western United States. Beall B , Chochua S , Li Z , Tran T , Varghese J , McGee L , Li Y , Metcalf B . J Infect Dis 2022 226 (2) 332-341
Genomic Characterization of Group A Streptococci Causing Pharyngitis and Invasive Disease in Colorado, USA, June 2016 - April 2017. Li Y , Dominguez S , Nanduri SA , Rivers J , Mathis S , Li Z , McGee L , Chochua S , Metcalf BJ , Van Beneden CA , Beall B , Miller L . J Infect Dis 2021 225 (10) 1841-1851
Serotype-Switch Variant of Multidrug-Resistant Streptococcus pneumoniae Sequence Type 271. Scherer EM , Beall B , Metcalf B . Emerg Infect Dis 2021 27 (6) 1689-1692
Low but Increasing Prevalence of Reduced Beta-lactam Susceptibility Among Invasive Group B Streptococcal Isolates, US Population-Based Surveillance, 1998-2018. Kobayashi M , McGee L , Chochua S , Apostol M , Alden NB , Farley MM , Harrison LH , Lynfield R , Vagnone PS , Smelser C , Muse A , Thomas AR , Deng L , Metcalf BJ , Beall BW , Schrag SJ . Open Forum Infect Dis 2021 8 (2) ofaa634
Invasive pneumococcal strain distributions and isolate clusters associated with persons experiencing homelessness during 2018. Metcalf BJ , Chochua S , Walker H , Tran T , Li Z , Varghese J , Snippes Vagnone PM , Lynfield R , McGee L , Li Y , Pilishvili T , Beall B . Clin Infect Dis 2020 72 (12) e948-e956
Characterization of Reference Materials for Spinal Muscular Atrophy Genetic Testing: A GeT-RM Collaborative Project. Prior TW , Bayrak-Toydemir P , Lynnes TC , Mao R , Metcalf JD , Muralidharan K , Iwata-Otsubo A , Pham HT , Pratt VM , Qureshi S , Requesens D , Shen J , Vetrini F , Kalman L . J Mol Diagn 2020 23 (1) 103-110
Upsurge of conjugate vaccine serotype 4 invasive pneumococcal disease clusters among adults experiencing homelessness in California, Colorado, and New Mexico. Beall B , Walker H , Tran T , Li Z , Varghese J , McGee L , Li Y , Metcalf BJ , Gierke R , Mosites E , Chochua S , Pilishvili T . J Infect Dis 2020 223 (7) 1241-1249
Genomic Surveillance of Streptococcus pyogenes Strains Causing Invasive Disease, United States, 2016-2017. Li Y , Rivers J , Mathis S , Li Z , Velusamy S , Nanduri SA , Van Beneden CA , Snippes-Vagnone P , Lynfield R , McGee L , Chochua S , Metcalf BJ , Beall B . Front Microbiol 2020 11 1547
Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates. Gladstone RA , Lo SW , Goater R , Yeats C , Taylor B , Hadfield J , Lees JA , Croucher NJ , van Tonder AJ , Bentley LJ , Quah FX , Blaschke AJ , Pershing NL , Byington CL , Balaji V , Hryniewicz W , Sigauque B , Ravikumar KL , Almeida SCG , Ochoa TJ , Ho PL , du Plessis M , Ndlangisa KM , Cornick JE , Kwambana-Adams B , Benisty R , Nzenze SA , Madhi SA , Hawkins PA , Pollard AJ , Everett DB , Antonio M , Dagan R , Klugman KP , von Gottberg A , Metcalf BJ , Li Y , Beall BW , McGee L , Breiman RF , Aanensen DM , Bentley SD . Microb Genom 2020 6 (5)
Multistate, population-based distributions of candidate vaccine targets, clonal complexes, and resistance features of invasive Group B Streptococci within the US: 2015-2017. McGee L , Chochua S , Li Z , Mathis S , Rivers J , Metcalf B , Ryan A , Alden N , Farley MM , Harrison LH , Snippes Vagnone P , Lynfield R , Smelser C , Muse A , Thomas AR , Schrag S , Beall BW . Clin Infect Dis 2020 72 (6) 1004-1013
A mosaic tetracycline resistance gene tet(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa. Lo SW , Gladstone RA , van Tonder AJ , Du Plessis M , Cornick JE , Hawkins PA , Madhi SA , Nzenze SA , Kandasamy R , Ravikumar KL , Elmdaghri N , Kwambana-Adams B , Almeida SCG , Skoczynska A , Egorova E , Titov L , Saha SK , Paragi M , Everett DB , Antonio M , Klugman KP , Li Y , Metcalf BJ , Beall B , McGee L , Breiman RF , Bentley SD , von Gottberg A . J Antimicrob Chemother 2019 75 (3) 512-520
Multistate population and whole genome sequence based strain surveillance of invasive pneumococci recovered in the United States during 2017. Varghese J , Chochua S , Tran T , Walker H , Li Z , Snippes Vagnone PM , Lynfield R , McGee L , Li Y , Metcalf B , Pilishvili T , Beall B . Clin Microbiol Infect 2019 26 (4) 512 e1-512 e10
Emergent Invasive Group A Streptococcus dysgalactiae subsp. Equisimilis, United States, 2015-2018. Chochua S , Rivers J , Mathis S , Li Z , Velusamy S , McGee L , Van Beneden C , Li Y , Metcalf BJ , Beall B . Emerg Infect Dis 2019 25 (8) 1543-1547
Genome-wide association analyses of invasive pneumococcal isolates identify a missense bacterial mutation associated with meningitis. Li Y , Metcalf BJ , Chochua S , Li Z , Walker H , Tran T , Hawkins PA , Gierke R , Pilishvili T , McGee L , Beall BW . Nat Commun 2019 10 (1) 178
A Population-Based Descriptive Atlas of Invasive Pneumococcal Strains Recovered Within the U.S. During 2015-2016. Beall B , Chochua S , Gertz RE Jr , Li Y , Li Z , McGee L , Metcalf BJ , Ricaldi J , Tran T , Walker H , Pilishvili T . Front Microbiol 2018 9 2670
Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci. Azarian T , Mitchell PK , Georgieva M , Thompson CM , Ghouila A , Pollard AJ , von Gottberg A , du Plessis M , Antonio M , Kwambana-Adams BA , Clarke SC , Everett D , Cornick J , Sadowy E , Hryniewicz W , Skoczynska A , Moisi JC , McGee L , Beall B , Metcalf BJ , Breiman RF , Ho PL , Reid R , O'Brien KL , Gladstone RA , Bentley SD , Hanage WP . PLoS Pathog 2018 14 (11) e1007438
A prolonged and large outbreak of invasive group A streptococcal disease within a nursing home: repeated intra-facility transmission of a single strain. Nanduri SA , Metcalf BJ , Arwady MA , Edens C , Lavin MA , Morgan J , Clegg W , Beron A , Albertson JP , Link-Gelles R , Ogundimu A , Gold J , Jackson D , Chochua S , Stone N , Van Beneden C , Fleming-Dutra K , Beall B . Clin Microbiol Infect 2018 25 (2) 248 e1-248 e7
Large Outbreak of Hepatitis C Virus Associated With Drug Diversion by a Healthcare Technician. Alroy-Preis S , Daly ER , Adamski C , Dionne-Odom J , Talbot EA , Gao F , Cavallo SJ , Hansen K , Mahoney JC , Metcalf E , Loring C , Bean C , Drobeniuc J , Xia GL , Kamili S , Montero JT . Clin Infect Dis 2018 67 (6) 845-853
Population and Whole Genome Sequence Based Characterization of Invasive Group A Streptococci Recovered in the United States during 2015. Chochua S , Metcalf BJ , Li Z , Rivers J , Mathis S , Jackson D , Gertz RE Jr , Srinivasan V , Lynfield R , Van Beneden C , McGee L , Beall B . mBio 2017 8 (5)