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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Jul 11, 2025. (Total: 6743 publications)
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Records 1-30 (of 100 Records)
Query Trace: McGee L[original query]
The epidemiology of bacterial meningitis in the United States during 2008–2023: an analysis of active, laboratory, population-based, multistate surveillance data
Prasad N , Kobayashi M , Collins JP , Rubis AB , Derado G , Delahoy MJ , Payne DC , McGee L , Chochua S , Marjuki H , McNamara LA , Fox LM , Reingold A , Barnes M , Petit S , Farley MM , Harrison LH , Lynfield R , Houston J , Anderson BJ , Thomas A , Talbot KH , Schaffner W , Cohen AL , Schrag SJ , Arvay M .
Lancet Reg Health - Am 2025 47 type
The emergent invasive serotype 4 ST10172 strain acquires vanG type vancomycin-resistance element: A case of a 66-year-old with bacteremic pneumococcal pneumonia
Chochua S , Beall B , Lin W , Tran T , Rivers J , Li Z , Arvay ML , Kobayashi M , Houston J , Arias S , McGee L .
J Infect Dis 2025 231 (3) 746-750 type
Investigating two decades of Streptococcus pneumoniae bacteraemia in the Gelderland area, the Netherlands, using whole-genome sequencing
Sanches Ferreira AD , King AC , Wolters F , Wertheim HFL , Mulder B , Swanink CMA , van der Gaast-de Jongh CE , Arends DW , van Sorge NM , Schaars C , Hung HCH , Hawkins PA , McGee L , Bentley SD , Veening JW , de Jonge MI , Lo SW , Cremers AJH .
Microb Genom 2025 11 (3) type
Update on the evolving landscape of pneumococcal capsule types: new discoveries and way forward
Ganaie FA , Beall BW , Yu J , van der Linden M , McGee L , Satzke C , Manna S , Lo SW , Bentley SD , Ravenscroft N , Nahm MH .
Clin Microbiol Rev 2025 e0017524 type
Household transmission of SARS-CoV-2 in five US jurisdictions: Comparison of Delta and Omicron variants
Baker JM , Nakayama JY , O'Hegarty M , McGowan A , Teran RA , Bart SM , Sosa LE , Brockmeyer J , English K , Mosack K , Bhattacharyya S , Khubbar M , Yerkes NR , Campos B , Paegle A , McGee J , Herrera R , Pearlowitz M , Williams TW , Kirking HL , Tate JE .
PLoS One 2025 20 (1) e0313680
Molecular epidemiology of invasive group B Streptococcus in South Africa, 2019-2020
Ntozini B , Walaza S , Metcalf B , Hazelhurst S , de Gouveia L , Meiring S , Mogale D , Mtshali S , Ismail A , Ndlangisa K , Du Plessis M , Quan V , Chochua S , McGee L , von Gottberg A , Wolter N .
J Infect Dis 2024 type
Genomic cluster formation among invasive group A streptococcal infections in the USA: a whole-genome sequencing and population-based surveillance study
Li Y , Rivers J , Mathis S , Li Z , Chochua S , Metcalf BJ , Beall B , McGee L .
Lancet Microbe 2024 100927 type
Impact of pneumococcal conjugate vaccines on invasive pneumococcal disease-causing lineages among South African children
Lekhuleni C , Ndlangisa K , Gladstone RA , Chochua S , Metcalf BJ , Li Y , Kleynhans J , de Gouveia L , Hazelhurst S , Ferreira ADS , Skosana H , Walaza S , Quan V , Meiring S , Hawkins PA , McGee L , Bentley SD , Cohen C , Lo SW , von Gottberg A , du Plessis M .
Nat Commun 2024 15 (1) 8401 type
Increased proportions of invasive pneumococcal disease cases amongs adults experiencing homelessness sets stage for new serotype 4 capsular-switch recombinant
Beall B , Chochua S , Metcalf B , Lin W , Tran T , Li Z , Li Y , Bentz ML , Sheth M , Osis G , McGee L .
J Infect Dis 2024 type
Prediction of post-PCV13 pneumococcal evolution using invasive disease data enhanced by inverse-invasiveness weighting
Qiu X , McGee L , Hammitt L , Grant LR , O'Brien KL , Hanage WP , Lipsitch M .
mBio 2024 e0335523 type
Geographical migration and fitness dynamics of Streptococcus pneumoniae
Belman S , Lefrancq N , Nzenze S , Downs S , du Plessis M , Lo SW , McGee L , Madhi SA , von Gottberg A , Bentley SD , Salje H .
Nature 2024 631 (8020) 386-392 type
Pneumococcal carriage in Burkina Faso after 13-valent pneumococcal conjugate vaccine introduction and before a schedule change
Childs L , Ouedraogo I , Zoma RL , Tarbangdo TF , Sawadogo G , Aké HF , Ouangraoua S , Sanou S , Tran T , Velusamy S , Adebanjo T , Van Beneden CA , McGee L , Kobayashi M .
Open Forum Infect Dis 2024 11 (6) ofae303 type
A novel invasive Streptococcus pyogenes variant sublineage derived through recombinational replacement of the emm12 genomic region
Unoarumhi Y , Davis ML , Rowe LA , Mathis S , Li Z , Chochua S , Li Y , McGee L , Metcalf BJ , Lee JS , Beall B .
Sci Rep 2023 13 (1) 21510 type
Genomic epidemiology of Streptococcus pneumoniae serotype 16F lineages
Mokaya J , Mellor KC , Murray GGR , Kalizang'oma A , Lekhuleni C , Zar HJ , Nicol MP , McGee L , Bentley SD , Lo SW , Dube F .
Microb Genom 2023 9 (11) type
Expansion of invasive group A streptococcus M1(uk) lineage in active bacterial core surveillance, United States, 2019‒2021
Li Y , Rivers J , Mathis S , Li Z , Chochua S , Metcalf BJ , Beall B , Onukwube J , Gregory CJ , McGee L .
Emerg Infect Dis 2023 29 (10) 2116-2120 type
Molecular characterization of Streptococcus pneumoniae causing disease among children in Nigeria during the introduction of PCV10 (GSK)
Lo SW , Hawkins PA , Jibir B , Hassan-Hanga F , Gambo M , Olaosebikan R , Olanipekun G , Munir H , Kocmich N , Rezac-Elgohary A , Gambo S , Bagenda D , Fey P , Breiman RF , McGee L , Bentley SD , Obaro SK .
Microb Genom 2023 9 (9) type
Pneumococcal carriage and changes in serotype distribution post- PCV13 introduction in children in Matiari, Pakistan
Iqbal I , Shahid S , Kanwar S , Kabir F , Umrani F , Ahmed S , Khan W , Qazi MF , Aziz F , Muneer S , Kalam A , Hotwani A , Mehmood J , Qureshi AK , Hasan Z , Shakoor S , Mirza S , McGee L , Lo SW , Kumar N , Azam I , Bentley SD , Jehan F , Nisar MI .
Vaccine 2024 42 (23) 126238 type
Novel pneumococcal capsule type 33E results from the inactivation of glycosyltransferase WciE in vaccine type 33F
Ganaie FA , Saad JS , Lo SW , McGee L , van Tonder AJ , Hawkins PA , Calix JJ , Bentley SD , Nahm MH .
J Biol Chem 2023 299 (9) 105085 type
Discovery and Characterization of Pneumococcal Serogroup 36 Capsule Subtypes, Serotypes 36A and 36B.
Ganaie FA , Saad JS , Lo SW , McGee L , Bentley SD , van Tonder AJ , Hawkins P , Keenan JD , Calix JJ , Nahm MH .
J Clin Microbiol 2023 61 (4) e0002423
Travel history among persons infected with SARS-CoV-2 variants of concern in the United States, December 2020-February 2021.
Dunajcik A , Haire K , Thomas JD , Moriarty LF , Springer Y , Villanueva JM , MacNeil A , Silk B , Nemhauser JB , Byrkit R , Taylor M , Queen K , Tong S , Lee J , Batra D , Paden C , Henderson T , Kunkes A , Ojo M , Firestone M , Martin Webb L , Freeland M , Brown CM , Williams T , Allen K , Kauerauf J , Wilson E , Jain S , McDonald E , Silver E , Stous S , Wadford D , Radcliffe R , Marriott C , Owes JP , Bart SM , Sosa LE , Oakeson K , Wodniak N , Shaffner J , Brown Q , Westergaard R , Salinas A , Hallyburton S , Ogale Y , Offutt-Powell T , Bonner K , Tubach S , Van Houten C , Hughes V , Reeb V , Galeazzi C , Khuntia S , McGee S , Hicks JT , Dinesh Patel D , Krueger A , Hughes S , Jeanty F , Wang JC , Lee EH , Assanah-Deane T , Tompkins M , Dougherty K , Naqvi O , Donahue M , Frederick J , Abdalhamid B , Powers AM , Anderson M .
PLOS Glob Public Health 2023 3 (3) e0001252
Key features of pneumococcal isolates recovered in Central and Northwestern Russia in 2011-2018 determined through whole-genome sequencing.
Egorova E , Kumar N , Gladstone RA , Urban Y , Voropaeva E , Chaplin AV , Rumiantseva E , Svistunova TS , Hawkins PA , Klugman KP , Breiman RF , McGee L , Bentley SD , Lo SW .
Microb Genom 2022 8 (9)
Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study.
Lo SW , Mellor K , Cohen R , Alonso AR , Belman S , Kumar N , Hawkins PA , Gladstone RA , von Gottberg A , Veeraraghavan B , Ravikumar KL , Kandasamy R , Pollard SAJ , Saha SK , Bigogo G , Antonio M , Kwambana-Adams B , Mirza S , Shakoor S , Nisar I , Cornick JE , Lehmann D , Ford RL , Sigauque B , Turner P , Moïsi J , Obaro SK , Dagan R , Diawara I , Skoczyńska A , Wang H , Carter PE , Klugman KP , Rodgers G , Breiman RF , McGee L , Bentley SD , Almagro CM , Varon E .
Lancet Microbe 2022 3 (10) e735-e743 type
Invasive Group A Streptococcal Penicillin Binding Protein 2× Variants Associated with Reduced Susceptibility to β-Lactam Antibiotics in the United States, 2015-2021.
Chochua S , Metcalf B , Li Z , Mathis S , Tran T , Rivers J , Fleming-Dutra KE , Li Y , McGee L , Beall B .
Antimicrob Agents Chemother 2022 66 (9) e0080222
Distinct Streptococcus pneumoniae cause invasive disease in Papua New Guinea.
Mellor KC , Lo S , Yoannes M , Michael A , Orami T , Greenhill AR , Breiman RF , Hawkins P , McGee L , Bentley SD , Ford RL , Lehmann D .
Microb Genom 2022 8 (7)
Effect of childhood vaccination and antibiotic use on pneumococcal populations and genome-wide associations with disease among children in Nepal: an observational study.
Kandasamy R , Lo S , Gurung M , Carter MJ , Gladstone R , Lees J , Shrestha S , Thorson S , Bijukchhe S , Gautam MC , Shrestha R , Gurung S , Khadka B , McGee L , Breiman RF , Murdoch DR , Kelly DF , Shrestha S , Bentley SD , Pollard AJ .
Lancet Microbe 2022 3 (7) e503-e511 type
Genetic background of Cambodian pneumococcal carriage isolates following pneumococcal conjugate vaccine 13.
Belman S , Soeng S , Soputhy C , Gladstone R , Hawkins PA , Breiman RF , McGee L , Bentley SD , Lo SW , Turner P .
Microb Genom 2022 8 (6) type
Population genomics of pneumococcal carriage in South Africa following the introduction of the 13-valent pneumococcal conjugate vaccine (PCV13) immunization.
Javaid N , Olwagen C , Nzenze S , Hawkins P , Gladstone R , McGee L , Breiman RF , Bentley SD , Madhi SA , Lo S .
Microb Genom 2022 8 (6) type
Continued Increase of Erythromycin- and Clindamycin-Nonsusceptibility among Invasive Group A Streptococci Driven by Genomic Clusters, USA, 2018-2019.
Li Y , Rivers J , Mathis S , Li Z , McGee L , Chochua S , Metcalf BJ , Fleming-Dutra KE , Nanduri SA , Beall B .
Clin Infect Dis 2022 76 (3) e1266-e1269 type
Cluster Transmission Drives Invasive Group A Streptococcus Disease Within the US and is Focused on Communities Experiencing Disadvantage.
Metcalf B , Nanduri S , Chochua S , Li Y , Fleming-Dutra K , McGee L , Beall B .
J Infect Dis 2022 226 (3) 546-553 type
Comparative genomics of disease and carriage serotype 1 pneumococci.
Chaguza C , Ebruke C , Senghore M , Lo SW , Tientcheu PE , Gladstone RA , Tonkin-Hill G , Cornick JE , Yang M , Worwui A , McGee L , Breiman RF , Klugman KP , Kadioglu A , Everett DB , Mackenzie G , Croucher NJ , Roca A , Kwambana-Adams BA , Antonio M , Bentley SD .
Genome Biol Evol 2022 14 (4) type
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