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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Mar 21, 2025. (Total: 6600 publications)
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Records 1-30 (of 99 Records)
Query Trace: McGee L[original query]
Investigating two decades of Streptococcus pneumoniae bacteraemia in the Gelderland area, the Netherlands, using whole-genome sequencing
Sanches Ferreira AD , King AC , Wolters F , Wertheim HFL , Mulder B , Swanink CMA , van der Gaast-de Jongh CE , Arends DW , van Sorge NM , Schaars C , Hung HCH , Hawkins PA , McGee L , Bentley SD , Veening JW , de Jonge MI , Lo SW , Cremers AJH .
Microb Genom 2025 11 (3) type
Update on the evolving landscape of pneumococcal capsule types: new discoveries and way forward
Ganaie FA , Beall BW , Yu J , van der Linden M , McGee L , Satzke C , Manna S , Lo SW , Bentley SD , Ravenscroft N , Nahm MH .
Clin Microbiol Rev 2025 e0017524 type
Household transmission of SARS-CoV-2 in five US jurisdictions: Comparison of Delta and Omicron variants
Baker JM , Nakayama JY , O'Hegarty M , McGowan A , Teran RA , Bart SM , Sosa LE , Brockmeyer J , English K , Mosack K , Bhattacharyya S , Khubbar M , Yerkes NR , Campos B , Paegle A , McGee J , Herrera R , Pearlowitz M , Williams TW , Kirking HL , Tate JE .
PLoS One 2025 20 (1) e0313680
Molecular epidemiology of invasive group B Streptococcus in South Africa, 2019-2020
Ntozini B , Walaza S , Metcalf B , Hazelhurst S , de Gouveia L , Meiring S , Mogale D , Mtshali S , Ismail A , Ndlangisa K , Du Plessis M , Quan V , Chochua S , McGee L , von Gottberg A , Wolter N .
J Infect Dis 2024 type
Genomic cluster formation among invasive group A streptococcal infections in the USA: a whole-genome sequencing and population-based surveillance study
Li Y , Rivers J , Mathis S , Li Z , Chochua S , Metcalf BJ , Beall B , McGee L .
Lancet Microbe 2024 100927 type
Impact of pneumococcal conjugate vaccines on invasive pneumococcal disease-causing lineages among South African children
Lekhuleni C , Ndlangisa K , Gladstone RA , Chochua S , Metcalf BJ , Li Y , Kleynhans J , de Gouveia L , Hazelhurst S , Ferreira ADS , Skosana H , Walaza S , Quan V , Meiring S , Hawkins PA , McGee L , Bentley SD , Cohen C , Lo SW , von Gottberg A , du Plessis M .
Nat Commun 2024 15 (1) 8401 type
Increased proportions of invasive pneumococcal disease cases amongs adults experiencing homelessness sets stage for new serotype 4 capsular-switch recombinant
Beall B , Chochua S , Metcalf B , Lin W , Tran T , Li Z , Li Y , Bentz ML , Sheth M , Osis G , McGee L .
J Infect Dis 2024 type
Prediction of post-PCV13 pneumococcal evolution using invasive disease data enhanced by inverse-invasiveness weighting
Qiu X , McGee L , Hammitt L , Grant LR , O'Brien KL , Hanage WP , Lipsitch M .
mBio 2024 e0335523 type
The emergent invasive serotype 4 ST10172 strain acquires vanG type vancomycin-resistance element: A case of a 66-year-old with bacteremic pneumococcal pneumonia
Chochua S , Beall B , Lin W , Tran T , Rivers J , Li Z , Arvay ML , Kobayashi M , Houston J , Arias S , McGee L .
J Infect Dis 2024 type
Geographical migration and fitness dynamics of Streptococcus pneumoniae
Belman S , Lefrancq N , Nzenze S , Downs S , du Plessis M , Lo SW , McGee L , Madhi SA , von Gottberg A , Bentley SD , Salje H .
Nature 2024 631 (8020) 386-392 type
Pneumococcal carriage in Burkina Faso after 13-valent pneumococcal conjugate vaccine introduction and before a schedule change
Childs L , Ouedraogo I , Zoma RL , Tarbangdo TF , Sawadogo G , Aké HF , Ouangraoua S , Sanou S , Tran T , Velusamy S , Adebanjo T , Van Beneden CA , McGee L , Kobayashi M .
Open Forum Infect Dis 2024 11 (6) ofae303 type
A novel invasive Streptococcus pyogenes variant sublineage derived through recombinational replacement of the emm12 genomic region
Unoarumhi Y , Davis ML , Rowe LA , Mathis S , Li Z , Chochua S , Li Y , McGee L , Metcalf BJ , Lee JS , Beall B .
Sci Rep 2023 13 (1) 21510 type
Genomic epidemiology of Streptococcus pneumoniae serotype 16F lineages
Mokaya J , Mellor KC , Murray GGR , Kalizang'oma A , Lekhuleni C , Zar HJ , Nicol MP , McGee L , Bentley SD , Lo SW , Dube F .
Microb Genom 2023 9 (11) type
Expansion of invasive group A streptococcus M1(uk) lineage in active bacterial core surveillance, United States, 2019‒2021
Li Y , Rivers J , Mathis S , Li Z , Chochua S , Metcalf BJ , Beall B , Onukwube J , Gregory CJ , McGee L .
Emerg Infect Dis 2023 29 (10) 2116-2120 type
Molecular characterization of Streptococcus pneumoniae causing disease among children in Nigeria during the introduction of PCV10 (GSK)
Lo SW , Hawkins PA , Jibir B , Hassan-Hanga F , Gambo M , Olaosebikan R , Olanipekun G , Munir H , Kocmich N , Rezac-Elgohary A , Gambo S , Bagenda D , Fey P , Breiman RF , McGee L , Bentley SD , Obaro SK .
Microb Genom 2023 9 (9) type
Pneumococcal carriage and changes in serotype distribution post- PCV13 introduction in children in Matiari, Pakistan
Iqbal I , Shahid S , Kanwar S , Kabir F , Umrani F , Ahmed S , Khan W , Qazi MF , Aziz F , Muneer S , Kalam A , Hotwani A , Mehmood J , Qureshi AK , Hasan Z , Shakoor S , Mirza S , McGee L , Lo SW , Kumar N , Azam I , Bentley SD , Jehan F , Nisar MI .
Vaccine 2024 42 (23) 126238 type
Novel pneumococcal capsule type 33E results from the inactivation of glycosyltransferase WciE in vaccine type 33F
Ganaie FA , Saad JS , Lo SW , McGee L , van Tonder AJ , Hawkins PA , Calix JJ , Bentley SD , Nahm MH .
J Biol Chem 2023 299 (9) 105085 type
Discovery and Characterization of Pneumococcal Serogroup 36 Capsule Subtypes, Serotypes 36A and 36B.
Ganaie FA , Saad JS , Lo SW , McGee L , Bentley SD , van Tonder AJ , Hawkins P , Keenan JD , Calix JJ , Nahm MH .
J Clin Microbiol 2023 61 (4) e0002423
Travel history among persons infected with SARS-CoV-2 variants of concern in the United States, December 2020-February 2021.
Dunajcik A , Haire K , Thomas JD , Moriarty LF , Springer Y , Villanueva JM , MacNeil A , Silk B , Nemhauser JB , Byrkit R , Taylor M , Queen K , Tong S , Lee J , Batra D , Paden C , Henderson T , Kunkes A , Ojo M , Firestone M , Martin Webb L , Freeland M , Brown CM , Williams T , Allen K , Kauerauf J , Wilson E , Jain S , McDonald E , Silver E , Stous S , Wadford D , Radcliffe R , Marriott C , Owes JP , Bart SM , Sosa LE , Oakeson K , Wodniak N , Shaffner J , Brown Q , Westergaard R , Salinas A , Hallyburton S , Ogale Y , Offutt-Powell T , Bonner K , Tubach S , Van Houten C , Hughes V , Reeb V , Galeazzi C , Khuntia S , McGee S , Hicks JT , Dinesh Patel D , Krueger A , Hughes S , Jeanty F , Wang JC , Lee EH , Assanah-Deane T , Tompkins M , Dougherty K , Naqvi O , Donahue M , Frederick J , Abdalhamid B , Powers AM , Anderson M .
PLOS Glob Public Health 2023 3 (3) e0001252
Key features of pneumococcal isolates recovered in Central and Northwestern Russia in 2011-2018 determined through whole-genome sequencing.
Egorova E , Kumar N , Gladstone RA , Urban Y , Voropaeva E , Chaplin AV , Rumiantseva E , Svistunova TS , Hawkins PA , Klugman KP , Breiman RF , McGee L , Bentley SD , Lo SW .
Microb Genom 2022 8 (9)
Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study.
Lo SW , Mellor K , Cohen R , Alonso AR , Belman S , Kumar N , Hawkins PA , Gladstone RA , von Gottberg A , Veeraraghavan B , Ravikumar KL , Kandasamy R , Pollard SAJ , Saha SK , Bigogo G , Antonio M , Kwambana-Adams B , Mirza S , Shakoor S , Nisar I , Cornick JE , Lehmann D , Ford RL , Sigauque B , Turner P , Moïsi J , Obaro SK , Dagan R , Diawara I , Skoczyńska A , Wang H , Carter PE , Klugman KP , Rodgers G , Breiman RF , McGee L , Bentley SD , Almagro CM , Varon E .
Lancet Microbe 2022 3 (10) e735-e743 type
Invasive Group A Streptococcal Penicillin Binding Protein 2× Variants Associated with Reduced Susceptibility to β-Lactam Antibiotics in the United States, 2015-2021.
Chochua S , Metcalf B , Li Z , Mathis S , Tran T , Rivers J , Fleming-Dutra KE , Li Y , McGee L , Beall B .
Antimicrob Agents Chemother 2022 66 (9) e0080222
Distinct Streptococcus pneumoniae cause invasive disease in Papua New Guinea.
Mellor KC , Lo S , Yoannes M , Michael A , Orami T , Greenhill AR , Breiman RF , Hawkins P , McGee L , Bentley SD , Ford RL , Lehmann D .
Microb Genom 2022 8 (7)
Effect of childhood vaccination and antibiotic use on pneumococcal populations and genome-wide associations with disease among children in Nepal: an observational study.
Kandasamy R , Lo S , Gurung M , Carter MJ , Gladstone R , Lees J , Shrestha S , Thorson S , Bijukchhe S , Gautam MC , Shrestha R , Gurung S , Khadka B , McGee L , Breiman RF , Murdoch DR , Kelly DF , Shrestha S , Bentley SD , Pollard AJ .
Lancet Microbe 2022 3 (7) e503-e511 type
Genetic background of Cambodian pneumococcal carriage isolates following pneumococcal conjugate vaccine 13.
Belman S , Soeng S , Soputhy C , Gladstone R , Hawkins PA , Breiman RF , McGee L , Bentley SD , Lo SW , Turner P .
Microb Genom 2022 8 (6) type
Population genomics of pneumococcal carriage in South Africa following the introduction of the 13-valent pneumococcal conjugate vaccine (PCV13) immunization.
Javaid N , Olwagen C , Nzenze S , Hawkins P , Gladstone R , McGee L , Breiman RF , Bentley SD , Madhi SA , Lo S .
Microb Genom 2022 8 (6) type
Continued Increase of Erythromycin- and Clindamycin-Nonsusceptibility among Invasive Group A Streptococci Driven by Genomic Clusters, USA, 2018-2019.
Li Y , Rivers J , Mathis S , Li Z , McGee L , Chochua S , Metcalf BJ , Fleming-Dutra KE , Nanduri SA , Beall B .
Clin Infect Dis 2022 76 (3) e1266-e1269 type
Cluster Transmission Drives Invasive Group A Streptococcus Disease Within the US and is Focused on Communities Experiencing Disadvantage.
Metcalf B , Nanduri S , Chochua S , Li Y , Fleming-Dutra K , McGee L , Beall B .
J Infect Dis 2022 226 (3) 546-553 type
Comparative genomics of disease and carriage serotype 1 pneumococci.
Chaguza C , Ebruke C , Senghore M , Lo SW , Tientcheu PE , Gladstone RA , Tonkin-Hill G , Cornick JE , Yang M , Worwui A , McGee L , Breiman RF , Klugman KP , Kadioglu A , Everett DB , Mackenzie G , Croucher NJ , Roca A , Kwambana-Adams BA , Antonio M , Bentley SD .
Genome Biol Evol 2022 14 (4) type
A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV.
Ndlangisa KM , du Plessis M , Lo S , de Gouveia L , Chaguza C , Antonio M , Kwambana-Adams B , Cornick J , Everett DB , Dagan R , Hawkins PA , Beall B , Corso A , Grassi Almeida SC , Ochoa TJ , Obaro S , Shakoor S , Donkor ES , Gladstone RA , Ho PL , Paragi M , Doiphode S , Srifuengfung S , Ford R , Moïsi J , Saha SK , Bigogo G , Sigauque B , Eser Ö K , Elmdaghri N , Titov L , Turner P , Kumar KLR , Kandasamy R , Egorova E , Ip M , Breiman RF , Klugman KP , McGee L , Bentley SD , von Gottberg A , The Global Pneumococcal Sequencing Consortium .
Microb Genom 2022 8 (4) type
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