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Public Health Genomics and Precision Health Knowledge Base (v10.0)
PHGKB
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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)
CDC-Authored Genomics and Precision Health Publications Database
Last data update: Sep 03, 2024
. (Total: 6282 publications)
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Records 1-30 (of 45 Records)
Query Trace:
Loparev V[original query]
Correction for Weigand et al., Complete Genome Sequences of Two Bordetella hinzii Strains Isolated from Humans.
Weigand MR
,
Changayil S
,
Kulasekarapandian Y
,
Batra D
,
Loparev V
,
Juieng P
,
Rowe L
,
Sheth M
,
Davis JK
,
Tondella ML
.
Genome Announc 2016 4 (1)
The first complete genome of the simian malaria parasite Plasmodium brasilianum.
Bajic M
,
Ravishankar S ,
Sheth M
,
Rowe LA
,
Pacheco MA , Patel DS ,
Batra D
,
Loparev V
,
Olsen C , Escalante AA , Vannberg F ,
Udhayakumar V
,
Barnwell JW
,
Talundzic E
.
Sci Rep 2022 12 (1) 19802
Draft Chromosome Sequences of a Clinical Isolate of the Free-Living Ameba Naegleria fowleri.
Ali IKM
,
Kelley A
,
Joseph SJ
,
Park S
,
Roy S
,
Jackson J
,
Cope JR
,
Rowe LA
,
Burroughs M
,
Sheth M
,
Batra D
,
Loparev V
.
Microbiol Resour Announc 2021 10 (15)
Conserved Patterns of Symmetric Inversion in the Genome Evolution of Bordetella Respiratory Pathogens.
Weigand MR
,
Peng Y
,
Batra D
,
Burroughs M
,
Davis JK
,
Knipe K
,
Loparev VN
,
Johnson T
,
Juieng P
,
Rowe LA
,
Sheth M
,
Tang K
,
Unoarumhi Y
,
Williams MM
,
Tondella ML
.
mSystems 2019 4 (6)
Draft Genome Sequences of Leishmania ( Leishmania ) amazonensis , Leishmania ( Leishmania ) mexicana , and Leishmania ( Leishmania ) aethiopica , Potential Etiological Agents of Diffuse Cutaneous Leishmaniasis.
Batra D
,
Lin W
,
Narayanan V
,
Rowe LA
,
Sheth M
,
Zheng Y
,
Loparev V
,
de Almeida M
.
Microbiol Resour Announc 2019 8 (20)
First Draft Genome Sequence of Leishmania (Viannia) lainsoni Strain 216-34, Isolated from a Peruvian Clinical Case.
Lin W
,
Batra D
,
Narayanan V
,
Rowe LA
,
Sheth M
,
Zheng Y
,
Juieng P
,
Loparev V
,
de Almeida M
.
Microbiol Resour Announc 2019 8 (6)
Draft Genome Sequence of French Guiana Leishmania ( Viannia ) guyanensis Strain 204-365, Assembled Using Long Reads.
Batra D ,
Lin W
,
Rowe LA , Sheth M ,
Zheng Y
,
Loparev V ,
de Almeida M
.
Microbiol Resour Announc 2018 7 (23)
Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species.
Munoz JF ,
Gade L
,
Chow NA
,
Loparev VN , Juieng P ,
Berkow EL
,
Farrer RA ,
Litvintseva AP
,
Cuomo CA .
Nat Commun 2018 9 (1) 5346
PacBio Genome Sequences of Escherichia coli Serotype O157:H7, Diffusely Adherent E. coli , and Salmonella enterica Strains, All Carrying Plasmids with an mcr-1 Resistance Gene.
Lindsey RL
,
Batra D
,
Smith P
,
Patel PN
,
Tagg KA ,
Garcia-Toledo L
,
Loparev VN
,
Juieng P
,
Sheth M
,
Joung YJ
,
Rowe LA
.
Microbiol Resour Announc 2018 7 (14)
High-Quality Whole-Genome Sequences for 77 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing.
Patel PN
,
Lindsey RL
,
Garcia-Toledo L
,
Rowe LA
,
Batra D
,
Whitley SW
,
Drapeau D
,
Stoneburg D
,
Martin H
,
Juieng P
,
Loparev VN
,
Strockbine N
.
Genome Announc 2018 6 (19)
High-Quality Whole-Genome Sequences for 59 Historical Shigella Strains Generated with PacBio Sequencing.
Kim J
,
Lindsey RL
,
Garcia-Toledo L
,
Loparev VN
,
Rowe LA
,
Batra D
,
Juieng P
,
Stoneburg D
,
Martin H
,
Knipe K
,
Smith P
,
Strockbine N
.
Genome Announc 2018 6 (15)
Genome Sequence of a Multidrug-Resistant Candida haemulonii Isolate from a Patient with Chronic Leg Ulcers in Israel.
Chow NA
,
Gade L
,
Batra D
,
Rowe LA
,
Juieng P
,
Ben-Ami R ,
Loparev VN
,
Litvintseva AP
.
Genome Announc 2018 6 (15)
Genome Sequence of the Amphotericin B-Resistant Candida duobushaemulonii Strain B09383.
Chow NA
,
Gade L
,
Batra D
,
Rowe LA
,
Juieng P
,
Loparev VN
,
Litvintseva AP
.
Genome Announc 2018 6 (13)
Screening and genomic characterization of filamentous hemagglutinin-deficient Bordetella pertussis.
Weigand MR
,
Pawloski LC
,
Peng Y
,
Ju H
,
Burroughs M
,
Cassiday PK
,
Davis JK
,
DuVall M
,
Johnson T
,
Juieng P
,
Knipe K
,
Loparev VN
,
Mathis MH
,
Rowe LA
,
Sheth M
,
Williams MM
,
Tondella ML
.
Infect Immun 2018 86 (4)
High-Quality Complete and Draft Genome Sequences for Three Escherichia spp. and Three Shigella spp. Generated with Pacific Biosciences and Illumina Sequencing and Optical Mapping.
Schroeder MR
,
Juieng P
,
Batra D
,
Knipe K
,
Rowe LA
,
Sheth M
,
Smith P
,
Garcia-Toledo L
,
Loparev VN
,
Lindsey RL
.
Genome Announc 2018 6 (1)
Standardization and validation of real time PCR assays for the diagnosis of histoplasmosis using three molecular targets in an animal model.
Lopez LF , Munoz CO ,
Caceres DH
,
Tobon AM , Loparev V , Clay O ,
Chiller T
,
Litvintseva A ,
Gade L
,
Gonzalez A , Gomez BL .
PLoS One 2017 12 (12) e0190311
Complete Circularized Genome Sequences of Four Strains of Elizabethkingia anophelis, Including Two Novel Strains Isolated from Wild-Caught Anopheles sinensis.
Pei D ,
Nicholson AC
,
Jiang J , Chen H ,
Whitney AM
,
Villarma A
,
Bell M
,
Humrighouse B
,
Rowe LA
,
Sheth M
,
Batra D
,
Juieng P
,
Loparev VN
,
McQuiston JR
,
Lan Y , Ma Y , Xu J .
Genome Announc 2017 5 (47)
Twelve Complete Reference Genomes of Clinical Isolates in the Capnocytophaga Genus.
Villarma A
,
Gulvik CA
,
Rowe LA
,
Sheth M
,
Juieng P
,
Nicholson AC
,
Loparev VN
,
McQuiston JR
.
Genome Announc 2017 5 (44)
Complete Genome Sequences of Bordetella pertussis Isolates with Novel Pertactin-Deficient Deletions.
Weigand MR
,
Peng Y
,
Cassiday PK
,
Loparev VN
,
Johnson T
,
Juieng P
,
Nazarian EJ , Weening K ,
Tondella ML
,
Williams MM
.
Genome Announc 2017 5 (37)
High-Quality Draft Genome Sequences for Four Drug-Resistant or Outbreak-Associated Shigella sonnei Strains Generated with PacBio Sequencing and Whole-Genome Maps.
Lindsey RL
,
Batra D
,
Rowe L
,
Loparev V N
,
Juieng P
,
Garcia-Toledo L
,
Bicknese A
,
Stripling D
,
Martin H
,
Chen J
,
Strockbine N
,
Trees E
.
Genome Announc 2017 5 (35)
Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov.
Nicholson AC
,
Gulvik CA
,
Whitney AM
,
Humrighouse BW
,
Graziano J
,
Emery B
,
Bell M
,
Loparev V
,
Juieng P
,
Gartin J
,
Bizet C , Clermont D , Criscuolo A , Brisse S ,
McQuiston JR
.
Antonie Van Leeuwenhoek 2017 111 (1) 55-72
Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain.
Perrin A , Larsonneur E ,
Nicholson AC
,
Edwards DJ , Gundlach KM , Whitney AM , Gulvik CA , Bell ME , Rendueles O , Cury J , Hugon P , Clermont D , Enouf V ,
Loparev V
,
Juieng P
,
Monson T , Warshauer D ,
Elbadawi LI
,
Walters MS
,
Crist MB
,
Noble-Wang J
,
Borlaug G , Rocha EPC , Criscuolo A , Touchon M , Davis JP , Holt KE , McQuiston JR , Brisse S .
Nat Commun 2017 8 15483
Evaluation of TaqMan Array Card (TAC) for the Detection of Central Nervous System Infections in Kenya.
Onyango CO
,
Loparev V
,
Lidechi S ,
Bhullar V
,
Schmid DS
,
Radford K
,
Lo MK
,
Rota P
,
Johnson BW
,
Munoz J
,
Oneko M ,
Burton D
,
Black CM
,
Neatherlin J
,
Montgomery JM
,
Fields B
.
J Clin Microbiol 2017 55 (7) 2035-2044
High-Quality Genome Sequence of an Escherichia coli O157 Strain Carrying an mcr-1 Resistance Gene Isolated from a Patient in the United States.
Lindsey RL
,
Batra D
,
Rowe L
,
Loparev VN
,
Stripling D
,
Garcia-Toledo L
,
Knipe K
,
Juieng P
,
Sheth M
,
Martin H
,
Laufer Halpin A
.
Genome Announc 2017 5 (11)
First Full Draft Genome Sequence of Plasmodium brasilianum.
Talundzic E
,
Ravishankar S , Nayak V ,
Patel DS
,
Olsen C , Sheth M ,
Batra D
,
Loparev V
,
Vannberg FO ,
Udhayakumar V
,
Barnwell JW
.
Genome Announc 2017 5 (6)
The History of Bordetella pertussis Genome Evolution Includes Structural Rearrangement.
Weigand MR
,
Peng Y
,
Loparev V
,
Batra D
,
Bowden KE
,
Burroughs M
,
Cassiday PK
,
Davis JK
,
Johnson T
,
Juieng P
,
Knipe K
,
Mathis MH
,
Pruitt AM
,
Rowe L
,
Sheth M
,
Tondella ML
,
Williams MM
.
J Bacteriol 2017 199 (8)
Complete Genome Sequences of Enterococcus rotai LMG 26678T and Enterococcus silesiacus LMG 23085T.
Lauer AC
,
Humrighouse BW
,
Loparev V
,
Shewmaker PL
,
Whitney AM
,
McQuiston JR
,
McLaughlin RW .
Genome Announc 2016 4 (6)
Complete Genome Sequences of Four Bordetella pertussis Vaccine Reference Strains from Serum Institute of India.
Weigand MR
,
Peng Y
,
Loparev V
,
Johnson T
,
Juieng P
,
Gairola S , Kumar R , Shaligram U ,
Gowrishankar R
,
Moura H
,
Rees J
,
Schieltz DM
,
Williamson Y
,
Woolfitt A
,
Barr J
,
Tondella ML
,
Williams MM
.
Genome Announc 2016 4 (6)
Complete Genome Sequences for Three Chromosomes of the Burkholderia stabilis Type Strain (ATCC BAA-67).
Bugrysheva JV
,
Cherney B
,
Sue D
,
Conley AB ,
Rowe LA
,
Knipe KM
,
Frace MA
,
Loparev VN
,
Avila JR , Anderson K , Hodge DR , Pillai SP ,
Weigel LM
.
Genome Announc 2016 4 (6)
Complete Genome Sequences of Four Different Bordetella sp. Isolates Causing Human Respiratory Infections.
Weigand MR
,
Peng Y
,
Loparev V
,
Batra D
,
Bowden KE
,
Cassiday PK
,
Davis JK
,
Johnson T
,
Juieng P
,
Miner CE
,
Rowe L
,
Sheth M
,
Tondella ML
,
Williams MM
.
Genome Announc 2016 4 (5)
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Page last reviewed:
Feb 1, 2024
Content source:
Public Health Genomics Branch in the Division of Blood Disorders and Public Health Genomics
,
National Center on Birth Defects and Developmental Disabilities
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