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Public Health Genomics and Precision Health Knowledge Base (v10.0)
PHGKB
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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)
CDC-Authored Genomics and Precision Health Publications Database
Last data update: Oct 28, 2024
. (Total: 6371 publications)
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Year
Journal
Records 1-24 (of 24 Records)
Query Trace:
Knipe K[original query]
Transmission potential of vaccinated and unvaccinated persons infected with the SARS-CoV-2 Delta variant in a federal prison, July-August 2021.
Salvatore PP
,
Lee CC
,
Sleweon S
,
McCormick DW
,
Nicolae L
,
Knipe K
,
Dixon T , Banta R , Ogle I , Young C , Dusseau C , Salmonson S , Ogden C , Godwin E , Ballom T , Rhodes T ,
Wynn NT
,
David E
,
Bessey TK
,
Kim G
,
Suppiah S
,
Tamin A
,
Harcourt JL
,
Sheth M
,
Lowe L
,
Browne H
,
Tate JE
,
Kirking HL
,
Hagan LM
.
Vaccine 2022 41 (11) 1808-1818
Benchmark datasets for SARS-CoV-2 surveillance bioinformatics.
Xiaoli L
,
Hagey JV
,
Park DJ ,
Gulvik CA
,
Young EL , Alikhan NF ,
Lawsin A
,
Hassell N
,
Knipe K
,
Oakeson KF ,
Retchless AC
,
Shakya M , Lo CC , Chain P , Page AJ ,
Metcalf BJ
,
Su M
,
Rowell J
,
Vidyaprakash E
,
Paden CR
,
Huang AD
,
Roellig D
,
Patel K
,
Winglee K
,
Weigand MR
,
Katz LS
.
PeerJ 2022 10 e13821
Genomic Surveillance for SARS-CoV-2 Variants: Predominance of the Delta (B.1.617.2) and Omicron (B.1.1.529) Variants - United States, June 2021-January 2022.
Lambrou AS
,
Shirk P
,
Steele MK
,
Paul P
,
Paden CR
,
Cadwell B
,
Reese HE
,
Aoki Y
,
Hassell N
,
Caravas J
,
Kovacs NA
,
Gerhart JG ,
Ng HJ
,
Zheng XY ,
Beck A
,
Chau R
,
Cintron R
,
Cook PW
,
Gulvik CA
,
Howard D
,
Jang Y
,
Knipe K
,
Lacek KA
,
Moser KA ,
Paskey AC
,
Rambo-Martin BL
,
Nagilla RR ,
Rethchless AC
,
Schmerer MW
,
Seby S
,
Shephard SS
,
Stanton RA
,
Stark TJ
,
Uehara A
,
Unoarumhi Y
,
Bentz ML
,
Burhgin A
,
Burroughs M
,
Davis ML
,
Keller MW
,
Keong LM ,
Le SS
,
Lee JS
,
Madden Jr JC
,
Nobles S
,
Owouor DC
,
Padilla J
,
Sheth M
,
Wilson MM
,
Talarico S
,
Chen JC
,
Oberste MS
,
Batra D
,
McMullan LK
,
Halpin AL
,
Galloway SE
,
MacCannell DR
,
Kondor R
,
Barnes J
,
MacNeil A
,
Silk BJ
,
Dugan VG
,
Scobie HM
,
Wentworth DE
.
MMWR Morb Mortal Wkly Rep 2022 71 (6) 206-211
Conserved Patterns of Symmetric Inversion in the Genome Evolution of Bordetella Respiratory Pathogens.
Weigand MR
,
Peng Y
,
Batra D
,
Burroughs M
,
Davis JK
,
Knipe K
,
Loparev VN
,
Johnson T
,
Juieng P
,
Rowe LA
,
Sheth M
,
Tang K
,
Unoarumhi Y
,
Williams MM
,
Tondella ML
.
mSystems 2019 4 (6)
Conjugal Transfer, Whole Genome Sequencing, and Plasmid Analysis of Four mcr-1 -bearing Isolates from U.S. Patients.
Zhu W
,
Lawsin A
,
Lindsey RL
,
Batra D
,
Knipe K
,
Yoo BB
,
Perry KA
,
Rowe LA
,
Lonsway D
,
Waters MS
,
Rasheed JK
,
Halpin AL
.
Antimicrob Agents Chemother 2019 63 (4)
Distinct evolutionary patterns of Neisseria meningitidis serogroup B disease outbreaks at two universities in the USA.
Hao L , Holden MTG ,
Wang X
,
Andrew L , Wellnitz S ,
Hu F
,
Whaley M
,
Sammons S
,
Knipe K
,
Frace M
,
McNamara LA
,
Liberator P , Anderson AS .
Microb Genom 2018 4 (4)
High-Quality Whole-Genome Sequences for 59 Historical Shigella Strains Generated with PacBio Sequencing.
Kim J
,
Lindsey RL
,
Garcia-Toledo L
,
Loparev VN
,
Rowe LA
,
Batra D
,
Juieng P
,
Stoneburg D
,
Martin H
,
Knipe K
,
Smith P
,
Strockbine N
.
Genome Announc 2018 6 (15)
Screening and genomic characterization of filamentous hemagglutinin-deficient Bordetella pertussis.
Weigand MR
,
Pawloski LC
,
Peng Y
,
Ju H
,
Burroughs M
,
Cassiday PK
,
Davis JK
,
DuVall M
,
Johnson T
,
Juieng P
,
Knipe K
,
Loparev VN
,
Mathis MH
,
Rowe LA
,
Sheth M
,
Williams MM
,
Tondella ML
.
Infect Immun 2018 86 (4)
High-Quality Complete and Draft Genome Sequences for Three Escherichia spp. and Three Shigella spp. Generated with Pacific Biosciences and Illumina Sequencing and Optical Mapping.
Schroeder MR
,
Juieng P
,
Batra D
,
Knipe K
,
Rowe LA
,
Sheth M
,
Smith P
,
Garcia-Toledo L
,
Loparev VN
,
Lindsey RL
.
Genome Announc 2018 6 (1)
High-Quality Whole-Genome Sequences for 21 Enterotoxigenic Escherichia coli Strains Generated with PacBio Sequencing.
Smith P
,
Lindsey RL
,
Rowe LA
,
Batra D
,
Stripling D
,
Garcia-Toledo L
,
Drapeau D
,
Knipe K
,
Strockbine N
.
Genome Announc 2018 6 (2)
High-Quality Genome Sequence of an Escherichia coli O157 Strain Carrying an mcr-1 Resistance Gene Isolated from a Patient in the United States.
Lindsey RL
,
Batra D
,
Rowe L
,
Loparev VN
,
Stripling D
,
Garcia-Toledo L
,
Knipe K
,
Juieng P
,
Sheth M
,
Martin H
,
Laufer Halpin A
.
Genome Announc 2017 5 (11)
The History of Bordetella pertussis Genome Evolution Includes Structural Rearrangement.
Weigand MR
,
Peng Y
,
Loparev V
,
Batra D
,
Bowden KE
,
Burroughs M
,
Cassiday PK
,
Davis JK
,
Johnson T
,
Juieng P
,
Knipe K
,
Mathis MH
,
Pruitt AM
,
Rowe L
,
Sheth M
,
Tondella ML
,
Williams MM
.
J Bacteriol 2017 199 (8)
The Establishment and Diversification of Epidemic-Associated Serogroup W Meningococcus in the African Meningitis Belt, 1994 to 2012.
Retchless AC
,
Hu F
,
Ouedraogo AS , Diarra S ,
Knipe K
,
Sheth M
,
Rowe LA
,
Sangare L , Ky Ba A , Ouangraoua S ,
Batra D
,
Novak RT
,
Ouedraogo Traore R ,
Wang X
.
mSphere 2016 1 (6)
Complete Genome Sequences for Three Chromosomes of the Burkholderia stabilis Type Strain (ATCC BAA-67).
Bugrysheva JV
,
Cherney B
,
Sue D
,
Conley AB ,
Rowe LA
,
Knipe KM
,
Frace MA
,
Loparev VN
,
Avila JR , Anderson K , Hodge DR , Pillai SP ,
Weigel LM
.
Genome Announc 2016 4 (6)
High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps.
Lindsey RL
,
Rowe L
,
Garcia-Toledo L
,
Loparev V
,
Knipe K
,
Stripling D
,
Martin H
,
Trees E
,
Juieng P
,
Batra D
,
Strockbine N
.
Genome Announc 2016 4 (3)
Complete Genome Sequences of Four Strains from the 2015-2016 Elizabethkingia anophelis Outbreak.
Nicholson AC
,
Whitney AM
,
Emery BD
,
Bell ME
,
Gartin JT
,
Humrighouse BW
,
Loparev VN
,
Batra D
,
Sheth M
,
Rowe LA
,
Juieng P
,
Knipe K
,
Gulvik C
,
McQuiston JR
.
Genome Announc 2016 4 (3)
Genome Structural Diversity among 31 Bordetella pertussis Isolates from Two Recent U.S. Whooping Cough Statewide Epidemics.
Bowden KE
,
Weigand MR
,
Peng Y
,
Cassiday PK
,
Sammons S
,
Knipe K
,
Rowe LA
,
Loparev V
,
Sheth M
,
Weening K ,
Tondella ML
,
Williams MM
.
mSphere 2016 1 (3)
Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25.
Lindsey RL
,
Knipe K
,
Rowe L
,
Garcia-Toledo L
,
Loparev V
,
Juieng P
,
Trees E
,
Strockbine N
,
Stripling D
,
Gerner-Smidt P
.
Genome Announc 2015 3 (6)
Finished Annotated Genome Sequence of Burkholderia pseudomallei Strain Bp1651, a Multidrug-Resistant Clinical Isolate.
Bugrysheva JV
,
Sue D
,
Hakovirta J
,
Loparev VN
,
Knipe K
,
Sammons SA
,
Ranganathan-Ganakammal S
,
Changayil S
,
Srinivasamoorthy G
,
Weil MR
,
Tatusov RL
,
Gee JE
,
Elrod MG
,
Hoffmaster AR
,
Weigel LM
.
Genome Announc 2015 3 (6)
Comparative genomic analysis reveals occurrence of genetic recombination in virulent Cryptosporidium hominis subtypes and telomeric gene duplications in Cryptosporidium parvum.
Guo Y
,
Tang K
,
Rowe LA
,
Li N ,
Roellig DM
,
Knipe K
,
Frace M
,
Yang C
,
Feng Y ,
Xiao L
.
BMC Genomics 2015 16 (1) 320
Genome Sequences of Vibrio navarrensis, a Potential Human Pathogen.
Gladney LM
,
Katz LS
,
Knipe KM
,
Rowe LA
,
Conley AB , Rishishwar L , Marino-Ramirez L , Jordan IK ,
Tarr CL
.
Genome Announc 2014 2 (6)
vanG element insertions within a conserved chromosomal site conferring vancomycin resistance to Streptococcus agalactiae and Streptococcus anginosus
Srinivasan V
,
Metcalf BJ
,
Knipe KM ,
Ouattara M
,
McGee L
,
Shewmaker PL
,
Glennen A , Nichols M , Harris C , Brimmage M , Ostrowsky B , Park CJ ,
Schrag SJ
,
Frace MA , Sammons SA ,
Beall B
.
mBio 2014 5 (4) e01386-14
Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains.
Lindsey RL
,
Trees E
,
Sammons S
,
Loparev V
,
Frace M
,
Strockbine N
,
Sabol AL
,
Sowers E
,
Stripling D
,
Martin H
,
Knipe K
,
Rowe L
,
Gerner-Smidt P
.
Genome Announc 2014 2 (4)
Genome sequences for five strains of the emerging pathogen Haemophilus haemolyticus.
Jordan IK , Conley AB , Antonov IV , Arthur RA , Cook ED , Cooper GP , Jones BL , Knipe KM , Lee KJ , Liu X , Mitchell GJ , Pande PR , Petit RA , Qin S , Rajan VN , Sarda S , Sebastian A , Tang S , Thapliyal R , Varghese NJ , Ye T ,
Katz LS
,
Wang X
,
Rowe L
,
Frace M
,
Mayer LW
.
J Bacteriol 2011 193 (20) 5879-80
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Page last reviewed:
Feb 1, 2024
Content source:
Public Health Genomics Branch in the Division of Blood Disorders and Public Health Genomics
,
National Center on Birth Defects and Developmental Disabilities
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