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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Nov 04, 2024. (Total: 6390 publications)
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Records 1-30 (of 130 Records)
Query Trace: Katz E[original query]
Randomized immunogenicity trial comparing 2019-2020 recombinant and egg-based influenza vaccines among frequently vaccinated healthcare personnel in Israel
Fowlkes AL , Peretz A , Greenberg D , Hirsch A , Martin ET , Levine MZ , Edwards L , Radke S , Lauring AS , Ferdinands JM , Zhang C , Yoo YM , Dryer J , Newes-Adeyi G , Azziz-Baumgartner E , Fry AM , Monto AS , Balicer R , Thompson MG , Katz MA .
Int J Infect Dis 2024 107260 type
Fasten: a toolkit for streaming operations on FASTQ files
Katz LS , Phan J , den Bakker HC .
J Open Source Softw 2024 9 (94) 6030 type
Incidence of laboratory-confirmed influenza and RSV and associated presenteeism and absenteeism among healthcare personnel, Israel, influenza seasons 2016 to 2019
Azziz-Baumgartner E , Hirsch A , Yoo YM , Peretz A , Greenberg D , Avni YS , Glatman-Freedman A , Mandelboim M , MacNeil A , Martin ET , Newes-Adeyi G , Thompson M , Monto AS , Balicer RD , Levine MZ , Katz MA .
Euro Surveill 2024 29 (31)
PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testing and training
Griffiths EJ , Mendes I , Maguire F , Guthrie JL , Wee BA , Schmedes S , Holt K , Yadav C , Cameron R , Barclay C , Dooley D , MacCannell D , Chindelevitch L , Karsch-Mizrachi I , Waheed Z , Katz L , Petit Iii R , Dave M , Oluniyi P , Nasar MI , Raphenya A , Hsiao WWL , Timme RE .
Microb Genom 2024 10 (6) type
Animal vaccine strain Brucella abortus infection in a plateletpheresis donor: A case report
Parsons MG , Hermelin D , Hennenfent A , Tiller RV , Annambhotla P , Negrón ME , Basavaraju SV , Katz LM .
Transfusion 2024 type
Rapid identification of enteric bacteria from whole genome sequences using average nucleotide identity metrics
Lindsey RL , Gladney LM , Huang AD , Griswold T , Katz LS , Dinsmore BA , Im MS , Kucerova Z , Smith PA , Lane C , Carleton HA .
Front Microbiol 2023 14 1225207 type
Coding-complete genome sequences of rotavirus A reference strains EDIM, Ph158, and CC425
Casey-Moore MC , Katz E , Mijatovic-Rustempasic S , Jaimes J , Gautam R , Bowen MD .
Microbiol Resour Announc 2023 12 (11) e0063023 type
Predicting food sources of Listeria monocytogenes based on genomic profiling using random forest model
Gu W , Cui Z , Stroika S , Carleton HA , Conrad A , Katz LS , Richardson LC , Hunter J , Click ES , Bruce BB .
Foodborne Pathog Dis 2023 20 (12) 579-586 type
Molecular investigation of Treponema pallidum strains associated with ocular syphilis in the United States, 2016-2020
Pillay A , Vilfort K , Debra A , Katz SS , Thurlow CM , Joseph SJ , Lundy S , Ji A , Jaeyoung H , Workowski KA , Barrow RY , Danavall D , Pettus K , Chi KH , Kersh EN , Cao W , Chen CY .
Microbiol Spectr 2024 e0058124 type
Characterization of a nonagglutinating toxigenic vibrio cholerae isolate
Gladney LM , Griswold T , Turnsek M , Im MS , Parsons MMB , Katz LS , Tarr CL , Lee CC .
Microbiol Spectr 2023 11 (3) e0018223
SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data.
Griswold T , Kapsak C , Chen JC , den Bakker HC , Williams G , Kelley A , Vidyaprakash E , Katz LS .
J Open Source Softw 2021 6 (60)
Cronobacter sakazakii Infections in Two Infants Linked to Powdered Infant Formula and Breast Pump Equipment - United States, 2021 and 2022.
Haston JC , Miko S , Cope JR , McKeel H , Walters C , Joseph LA , Griswold T , Katz LS , Andújar AA , Tourdot L , Rounds J , Vagnone P , Medus C , Harris J , Geist R , Neises D , Wiggington A , Smith T , Im MS , Wheeler C , Smith P , Carleton HA , Lee CC .
MMWR Morb Mortal Wkly Rep 2023 72 (9) 223-226 type
Genome Sequences from a Reemergence of Vibrio cholerae in Haiti, 2022 Reveal Relatedness to Previously Circulating Strains.
Walters C , Chen J , Stroika S , Katz LS , Turnsek M , Compère V , Im MS , Gomez S , McCullough A , Landaverde C , Putney J , Caidi H , Folster J , Carleton HA , Boncy J , Lee CC .
J Clin Microbiol 2023 61 (3) e0014223 type
Genome Sequences of Hemolytic and Nonhemolytic Listeria innocua Strains from Human, Food, and Environmental Sources.
McIntosh T , Kucerova Z , Katz LS , Lilley CM , Rowe LA , Unoarumhi Y , Batra D , Burnett E , Smikle M , Lee C .
Microbiol Resour Announc 2022 11 (12) e0072322 type
Benchmark datasets for SARS-CoV-2 surveillance bioinformatics.
Xiaoli L , Hagey JV , Park DJ , Gulvik CA , Young EL , Alikhan NF , Lawsin A , Hassell N , Knipe K , Oakeson KF , Retchless AC , Shakya M , Lo CC , Chain P , Page AJ , Metcalf BJ , Su M , Rowell J , Vidyaprakash E , Paden CR , Huang AD , Roellig D , Patel K , Winglee K , Weigand MR , Katz LS .
PeerJ 2022 10 e13821
Molecular characterization of circulating Salmonella Typhi strains in an urban informal settlement in Kenya.
Ochieng C , Chen JC , Osita MP , Katz LS , Griswold T , Omballa V , Ng'eno E , Ouma A , Wamola N , Opiyo C , Achieng L , Munywoki PK , Hendriksen RS , Freeman M , Mikoleit M , Juma B , Bigogo G , Mintz E , Verani JR , Hunsperger E , Carleton HA .
PLoS Negl Trop Dis 2022 16 (8) e0010704
Selective Whole-Genome Amplification as a Tool to Enrich Specimens with Low Treponema pallidum Genomic DNA Copies for Whole-Genome Sequencing.
Thurlow CM , Joseph SJ , Ganova-Raeva L , Katz SS , Pereira L , Chen C , Debra A , Vilfort K , Workowski K , Cohen SE , Reno H , Sun Y , Burroughs M , Sheth M , Chi KH , Danavall D , Philip SS , Cao W , Kersh EN , Pillay A .
mSphere 2022 7 (3) e0000922 type
Race, ethnicity, and disparities in risk of end-organ lupus manifestations following SLE diagnosis in a multiethnic cohort.
Aguirre A , Izadi Z , Trupin L , Barbour KE , Greenlund KJ , Katz P , Lanata C , Criswell L , Dall'Era M , Yazdany J .
Arthritis Care Res (Hoboken) 2022 75 (1) 34-43
The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.
Stevens EL , Carleton HA , Beal J , Tillman GE , Lindsey RL , Lauer AC , Pightling A , Jarvis KG , Ottesen A , Ramachandran P , Hintz L , Katz LS , Folster JP , Whichard JM , Trees E , Timme RE , McDermott P , Wolpert B , Bazaco M , Zhao S , Lindley S , Bruce BB , Griffin PM , Brown E , Allard M , Tallent S , Irvin K , Hoffmann M , Wise M , Tauxe R , Gerner-Smidt P , Simmons M , Kissler B , Defibaugh-Chavez S , Klimke W , Agarwala R , Lindsay J , Cook K , Austerman SR , Goldman D , McGarry S , Hale KR , Dessai U , Musser SM , Braden C .
J Food Prot 2022 85 (5) 755-772 type
Whole genome analysis of rotavirus strains circulating in Benin before vaccine introduction, 2016-2018.
Agbla JM , Esona MD , Jaimes J , Gautam R , Agbankpé AJ , Katz E , Dougnon TV , Capo-Chichi A , Ouedraogo N , Razack O , Bankolé HS , Bowen MD .
Virus Res 2022 313 198715 type
Software testing in microbial bioinformatics: a call to action.
van der Putten BCL , Mendes CI , Talbot BM , de Korne-Elenbaas J , Mamede R , Vila-Cerqueira P , Coelho LP , Gulvik CA , Katz LS , The Asm Ngs Hackathon Participants .
Microb Genom 2022 8 (3)
Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package.
Griffiths EJ , Timme RE , Mendes CI , Page AJ , Alikhan NF , Fornika D , Maguire F , Campos J , Park D , Olawoye IB , Oluniyi PE , Anderson D , Christoffels A , da Silva AG , Cameron R , Dooley D , Katz LS , Black A , Karsch-Mizrachi I , Barrett T , Johnston A , Connor TR , Nicholls SM , Witney AA , Tyson GH , Tausch SH , Raphenya AR , Alcock B , Aanensen DM , Hodcroft E , Hsiao WWL , Vasconcelos ATR , MacCannell DR .
Gigascience 2022 11 type
Chlamydia trachomatis variants escaping detection in the Aptima Combo 2® assay in the United States.
Katz SS , Danavall DC , Morris MR , Herrod BP , Dale SE , Nye MB , Kersh EN , Kirkcaldy RD , Raphael BH .
Sex Transm Dis 2022 49 (6) 448-452 type
Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks.
Wagner DD , Carleton HA , Trees E , Katz LS .
PeerJ 2021 9 e12446 type
Use of real-time PCR as an alternative to conventional genotyping methods for the laboratory detection of lymphogranuloma venereum (LGV).
Woodson EN , Katz SS , Mosley SS , Danavall DC , Bowden KE , Chi KH , Raphael BH .
Diagn Microbiol Infect Dis 2021 101 (4) 115532 type
Comparative genomic analysis of genogroup 1 and genogroup 2 rotaviruses circulating in seven US cities, 2014-2016.
Esona MD , Gautam R , Katz E , Jaime J , Ward ML , Wikswo ME , Betrapally NS , Rustempasic SM , Selvarangan R , Harrison CJ , Boom JA , Englund J , Klein EJ , Staat MA , McNeal MM , Halasa N , Chappell J , Weinberg GA , Payne DC , Parashar UD , Bowen MD .
Virus Evol 2021 7 (1) veab023 type
Development of a real-time reverse transcription-PCR assay to detect and quantify group A rotavirus equine-like G3 strains.
Katz EM , Esona MD , Gautam R , Bowen MD .
J Clin Microbiol 2021 59 (11) Jcm0260220 type
Effectiveness of monovalent rotavirus vaccine against hospitalizations due to all rotavirus and equine-like G3P[8] genotypes in Haiti 2014-2019.
Burnett E , Juin S , Esona MD , Desormeaux AM , Aliabadi N , Pierre M , Andre-Alboth J , Leshem E , Etheart MD , Patel R , Dely P , Fitter D , Jean-Denis G , Kalou M , Katz MA , Bowen MD , Grant-Greene Y , Boncy J , Parashar UD , Joseph GA , Tate JE .
Vaccine 2021 39 (32) 4458-4462
Whole gene analysis of a genotype G29P[6] human rotavirus strain identified in Central African Republic.
Banga-Mingo V , Esona MD , Betrapally NS , Gautam R , Jaimes J , Katz E , Waku-Kouomou D , Bowen MD , Gouandjika-Vasilache I .
BMC Res Notes 2021 14 (1) 218 type
Clinical and Laboratory Findings in Patients with Potential SARS-CoV-2 Reinfection, May-July 2020.
Lee JT , Hesse EM , Paulin HN , Datta D , Katz LS , Talwar A , Chang G , Galang RR , Harcourt JL , Tamin A , Thornburg NJ , Wong KK , Stevens V , Kim K , Tong S , Zhou B , Queen K , Drobeniuc J , Folster JM , Sexton DJ , Ramachandran S , Browne H , Iskander J , Mitruka K .
Clin Infect Dis 2021 73 (12) 2217-2225
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