CDC-Authored Genomics and Precision Health Publications Database
Last data update: Oct 28, 2024. (Total: 6371 publications)
| Query Trace: Juma J[original query] |
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| Investigation and successful control of a Candida auris outbreak at a tertiary health care facility in Kenya
Ombajo LA , Kanyua A , Ngugi R , Malcolm C , Berkow E , Gade L , Bancroft E , Osoro J , Njoroge R , Juma P , Ngirita M , Bore RC , Litvintseva A , Lyman M , Toda M . IJID Regions 2024 13 
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| Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition.
Pop M , Walker AW , Paulson J , Lindsay B , Antonio M , Hossain MA , Oundo J , Tamboura B , Mai V , Astrovskaya I , Corrada Bravo H , Rance R , Stares M , Levine MM , Panchalingam S , Kotloff K , Ikumapayi UN , Ebruke C , Adeyemi M , Ahmed D , Ahmed F , Alam MT , Amin R , Siddiqui S , Ochieng JB , Ouma E , Juma J , Mailu E , Omore R , Morris JG , Breiman RF , Saha D , Parkhill J , Nataro JP , Stine OC . Genome Biol 2014 15 (6) R76 |
| Histo-Blood Group Antigen Null Phenotypes Associated With a Decreased Risk of Clinical Rotavirus Vaccine Failure Among Children <2 Years of Age Participating in the Vaccine Impact on Diarrhea in Africa (VIDA) Study in Kenya, Mali, and the Gambia
Schwartz LM , Oshinsky J , Reymann M , Esona MD , Bowen MD , Jahangir Hossain M , Zaman SMA , Jones JCM , Antonio M , Badji H , Sarwar G , Sow SO , Sanogo D , Keita AM , Tamboura B , Traoré A , Onwuchekwa U , Omore R , Verani JR , Awuor AO , Ochieng JB , Juma J , Ogwel B , Parashar UD , Tate JE , Kasumba IN , Tennant SM , Neuzil KM , Rowhani-Rahbar A , Elizabeth Halloran M , Atmar RL , Pasetti MF , Kotloff KL . Clin Infect Dis 2023 76 S153-s161
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| Prevalence, clinical severity, and seasonality of adenovirus 40/41, astrovirus, sapovirus, and rotavirus among young children with moderate-to-severe diarrhea: Results from the Vaccine Impact on Diarrhea in Africa (VIDA) Study
Keita AM , Doh S , Sow SO , Powell H , Omore R , Jahangir Hossain M , Ogwel B , Ochieng JB , Jones JCM , Zaman SMA , Awuor AO , Juma J , Nasrin D , Liu J , Traoré A , Onwuchekwa U , Badji H , Sarwar G , Antonio M , Houpt ER , Tennant SM , Kasumba IN , Jamka LP , Roose A , Platts-Mills JA , Verani JR , Tate JE , Parashar UD , Neuzil KM , Kotloff KL . Clin Infect Dis 2023 76 S123-s131 |
| Epidemiology of enteroaggregative, enteropathogenic, and shiga toxin-producing escherichia coli among children aged <5 years in 3 countries in Africa, 2015-2018: Vaccine Impact on Diarrhea in Africa (VIDA) Study
Ochieng JB , Powell H , Sugerman CE , Omore R , Ogwel B , Juma J , Awuor AO , Sow SO , Sanogo D , Onwuchekwa U , Keita AM , Traoré A , Badji H , Hossain MJ , Jones JCM , Kasumba IN , Nasrin D , Roose A , Liang Y , Jamka LP , Antonio M , Platts-Mills JA , Liu J , Houpt ER , Mintz ED , Hunsperger E , Onyango CO , Strockbine N , Widdowson MA , Verani JR , Tennant SM , Kotloff KL . Clin Infect Dis 2023 76 S77-s86 |
| Norovirus disease among children <5 years in 3 Sub-Saharan African countries: Findings from the Vaccine Impact on Diarrhea in Africa (VIDA) Study, 2015-2018
Omore R , Powell H , Sow SO , Jahangir Hossain M , Ogwel B , Doh S , Ochieng JB , Jones JCM , Zaman SMA , Awuor AO , Juma J , Kasumba IN , Roose A , Jamka LP , Nasrin D , Liu J , Keita AM , Traoré A , Onwuchekwa U , Badji H , Sarwar G , Antonio M , Sugerman CE , Mintz ED , Houpt ER , Verani JR , Widdowson MA , Tennant SM , Platts-Mills JA , Tate JE , Parashar UD , Kotloff KL . Clin Infect Dis 2023 76 S114-s122 |
| Prevalence of colonization with multidrug-resistant bacteria in communities and hospitals in Kenya.
Ita T , Luvsansharav UO , Smith RM , Mugoh R , Ayodo C , Oduor B , Jepleting M , Oguta W , Ouma C , Juma J , Bigogo G , Kariuki S , Ramay BM , Caudell M , Onyango C , Ndegwa L , Verani JR , Bollinger S , Sharma A , Palmer GH , Call DR , Omulo S . Sci Rep 2022 12 (1) 22290 |
| Molecular characterization of circulating Salmonella Typhi strains in an urban informal settlement in Kenya.
Ochieng C , Chen JC , Osita MP , Katz LS , Griswold T , Omballa V , Ng'eno E , Ouma A , Wamola N , Opiyo C , Achieng L , Munywoki PK , Hendriksen RS , Freeman M , Mikoleit M , Juma B , Bigogo G , Mintz E , Verani JR , Hunsperger E , Carleton HA . PLoS Negl Trop Dis 2022 16 (8) e0010704 |
| Genome Sequence of Escherichia coli Isolated from an Adult in Kibera, an Urban Informal Settlement in Nairobi, Kenya.
Kikwai GK , Juma B , Nindo F , Ochieng C , Wamola N , Mbogo K , Call DR , Hunsperger E . Microbiol Resour Announc 2022 11 (4) e0124121
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| Factors associated with typical enteropathogenic Escherichia coli infection among children <5 years old with moderate-to-severe diarrhoea in rural western Kenya, 2008-2012.
Fagerli K , Omore R , Kim S , Ochieng JB , Ayers TL , Juma J , Farag TH , Nasrin D , Panchalingam S , Robins-Browne RM , Nataro JP , Kotloff KL , Levine MM , Oundo J , Parsons MB , Laserson KF , Mintz ED , Breiman RF , O'Reilly CE . Epidemiol Infect 2020 148 1-37 |
| The Clinical Presentation of Culture-positive and Culture-negative, Quantitative Polymerase Chain Reaction (qPCR)-Attributable Shigellosis in the Global Enteric Multicenter Study and Derivation of a Shigella Severity Score: Implications for Pediatric Shigella Vaccine Trials.
Pavlinac PB , Platts-Mills JA , Tickell KD , Liu J , Juma J , Kabir F , Nkeze J , Okoi C , Operario DJ , Uddin MJ , Ahmed S , Alonso PL , Antonio M , Becker SM , Breiman RF , Faruque ASG , Fields B , Gratz J , Haque R , Hossain A , Hossain MJ , Jarju S , Qamar F , Iqbal NT , Kwambana B , Mandomando I , McMurry TL , Ochieng C , Ochieng JB , Ochieng M , Onyango C , Panchalingam S , Kalam A , Aziz F , Qureshi S , Ramamurthy T , Roberts JH , Saha D , Sow SO , Stroup SE , Sur D , Tamboura B , Taniuchi M , Tennant SM , Roose A , Toema D , Wu Y , Zaidi A , Nataro JP , Levine MM , Houpt ER , Kotloff KL . Clin Infect Dis 2020 73 (3) e569-e579 |
| Rotavirus group A genotype circulation patterns across Kenya before and after nationwide vaccine introduction, 2010-2018.
Mwanga MJ , Owor BE , Ochieng JB , Ngama MH , Ogwel B , Onyango C , Juma J , Njeru R , Gicheru E , Otieno GP , Khagayi S , Agoti CN , Bigogo GM , Omore R , Addo OY , Mapaseka S , Tate JE , Parashar UD , Hunsperger E , Verani JR , Breiman RF , Nokes DJ . BMC Infect Dis 2020 20 (1) 504
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| Multi-drug resistant non-typhoidal Salmonella associated with invasive disease in western Kenya.
Akullian A , Montgomery JM , John-Stewart G , Miller SI , Hayden HS , Radey MC , Hager KR , Verani JR , Ochieng JB , Juma J , Katieno J , Fields B , Bigogo G , Audi A , Walson J . PLoS Negl Trop Dis 2018 12 (1) e0006156
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| Use of quantitative molecular diagnostic methods to identify causes of diarrhoea in children: a reanalysis of the GEMS case-control study.
Liu J , Platts-Mills JA , Juma J , Kabir F , Nkeze J , Okoi C , Operario DJ , Uddin J , Ahmed S , Alonso PL , Antonio M , Becker SM , Blackwelder WC , Breiman RF , Faruque AS , Fields B , Gratz J , Haque R , Hossain A , Hossain MJ , Jarju S , Qamar F , Iqbal NT , Kwambana B , Mandomando I , McMurry TL , Ochieng C , Ochieng JB , Ochieng M , Onyango C , Panchalingam S , Kalam A , Aziz F , Qureshi S , Ramamurthy T , Roberts JH , Saha D , Sow SO , Stroup SE , Sur D , Tamboura B , Taniuchi M , Tennant SM , Toema D , Wu Y , Zaidi A , Nataro JP , Kotloff KL , Levine MM , Houpt ER . Lancet 2016 388 (10051) 1291-301 |
| Plasmodium Parasitemia Associated With Increased Survival in Ebola Virus-Infected Patients.
Rosenke K , Adjemian J , Munster VJ , Marzi A , Falzarano D , Onyango CO , Ochieng M , Juma B , Fischer RJ , Prescott JB , Safronetz D , Omballa V , Owuor C , Hoenen T , Groseth A , Martellaro C , van Doremalen N , Zemtsova G , Self J , Bushmaker T , McNally K , Rowe T , Emery SL , Feldmann F , Williamson BN , Best SM , Nyenswah TG , Grolla A , Strong JE , Kobinger G , Bolay FK , Zoon KC , Stassijns J , Giuliani R , de Smet M , Nichol ST , Fields B , Sprecher A , Massaquoi M , Feldmann H , de Wit E . Clin Infect Dis 2016 63 (8) 1026-33 |
| Development of a TaqMan Array Card for Acute Febrile Illness Outbreak Investigation and Surveillance of Emerging Pathogens including Ebola Virus.
Liu J , Ochieng C , Wiersma S , Stroher U , Towner JS , Whitmer S , Nichol ST , Moore CC , Kersh GJ , Kato C , Sexton C , Petersen J , Massung R , Hercik C , Crump JA , Kibiki G , Maro A , Mujaga B , Gratz J , Jacob ST , Banura P , Scheld WM , Juma B , Onyango CO , Montgomery JM , Houpt E , Fields B . J Clin Microbiol 2015 54 (1) 49-58 |
| In vitro and molecular surveillance for antimalarial drug resistance in Plasmodium falciparum parasites in western Kenya reveals sustained artemisinin sensitivity and increased chloroquine sensitivity.
Lucchi NW , Komino F , Okoth SA , Goldman I , Onyona P , Wiegand RE , Juma E , Shi YP , Barnwell JW , Udhayakumar V , Kariuki S . Antimicrob Agents Chemother 2015 59 (12) 7540-7 |
| Defining the phylogenomics of Shigella species: a pathway to diagnostics.
Sahl JW , Morris CR , Emberger J , Fraser CM , Ochieng JB , Juma J , Fields B , Breiman RF , Gilmour M , Nataro JP , Rasko DA . J Clin Microbiol 2015 53 (3) 951-60 |
| Survey of culture, golden gate assay, universal biosensor assay, and 16S rRNA gene sequencing as alternative methods of bacterial pathogen detection
Lindsay B , Pop M , Antonio M , Walker AW , Mai V , Ahmed D , Oundo J , Tamboura B , Panchalingam S , Levine MM , Kotloff K , Li S , Magder LS , Paulson JN , Liu B , Ikumapayi U , Ebruke C , Dione M , Adeyemi M , Rance R , Stares MD , Ukhanova M , Barnes B , Lewis I , Ahmed F , Alam MT , Amin R , Siddiqui S , Ochieng JB , Ouma E , Juma J , Mailu E , Omore R , O'Reilly CE , Hannis J , Manalili S , Deleon J , Yasuda I , Blyn L , Ranken R , Li F , Housley R , Ecker DJ , Hossain MA , Breiman RF , Morris JG , McDaniel TK , Parkhill J , Saha D , Sampath R , Stine OC , Nataro JP . J Clin Microbiol 2013 51 (10) 3263-9 |
| Quantitative PCR for detection of Shigella improves ascertainment of Shigella burden in children with moderate-to-severe diarrhea in low-income countries
Lindsay B , Ochieng JB , Ikumapayi UN , Toure A , Ahmed D , Li S , Panchalingam S , Levine MM , Kotloff K , Rasko DA , Morris CR , Juma J , Fields BS , Dione M , Malle D , Becker SM , Houpt ER , Nataro JP , Sommerfelt H , Pop M , Oundo J , Antonio M , Hossain A , Tamboura B , Stine OC . J Clin Microbiol 2013 51 (6) 1740-6 |
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