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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Sep 30, 2024. (Total: 6327 publications)
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Records 1-30 (of 33 Records)
Query Trace: Jain S[original query]
Acute hepatitis due to primary human immunodeficiency virus infection
Elliott EI , Smith D , Lipscomb J , Banini B , Meurer L , Vanderford TH , Johnson JA , Jain D , Achhra A .
Open Forum Infect Dis 2024 11 (4) ofae170 type
Development of reverse genetic tools to study Chapare and Machupo viruses
Jain S , Shrivastava-Ranjan P , Flint M , Montgomery JM , Spiropoulou CF , Albariño CG .
Virology 2023 588 109888 type
Urinary paraben concentrations and associations with the periconceptional urinary metabolome: Untargeted and targeted metabolomics analyses of participants from the Early Pregnancy Study
Rosen Vollmar AK , Rattray NJW , Cai Y , Jain A , Yan H , Deziel NC , Calafat AM , Wilcox AJ , Jukic AMZ , Johnson CH .
Environ Health Perspect 2023 131 (9) 97006
Travel history among persons infected with SARS-CoV-2 variants of concern in the United States, December 2020-February 2021.
Dunajcik A , Haire K , Thomas JD , Moriarty LF , Springer Y , Villanueva JM , MacNeil A , Silk B , Nemhauser JB , Byrkit R , Taylor M , Queen K , Tong S , Lee J , Batra D , Paden C , Henderson T , Kunkes A , Ojo M , Firestone M , Martin Webb L , Freeland M , Brown CM , Williams T , Allen K , Kauerauf J , Wilson E , Jain S , McDonald E , Silver E , Stous S , Wadford D , Radcliffe R , Marriott C , Owes JP , Bart SM , Sosa LE , Oakeson K , Wodniak N , Shaffner J , Brown Q , Westergaard R , Salinas A , Hallyburton S , Ogale Y , Offutt-Powell T , Bonner K , Tubach S , Van Houten C , Hughes V , Reeb V , Galeazzi C , Khuntia S , McGee S , Hicks JT , Dinesh Patel D , Krueger A , Hughes S , Jeanty F , Wang JC , Lee EH , Assanah-Deane T , Tompkins M , Dougherty K , Naqvi O , Donahue M , Frederick J , Abdalhamid B , Powers AM , Anderson M .
PLOS Glob Public Health 2023 3 (3) e0001252
Evaluation of individual and ensemble probabilistic forecasts of COVID-19 mortality in the United States.
Cramer EY , Ray EL , Lopez VK , Bracher J , Brennen A , Castro Rivadeneira AJ , Gerding A , Gneiting T , House KH , Huang Y , Jayawardena D , Kanji AH , Khandelwal A , Le K , Mühlemann A , Niemi J , Shah A , Stark A , Wang Y , Wattanachit N , Zorn MW , Gu Y , Jain S , Bannur N , Deva A , Kulkarni M , Merugu S , Raval A , Shingi S , Tiwari A , White J , Abernethy NF , Woody S , Dahan M , Fox S , Gaither K , Lachmann M , Meyers LA , Scott JG , Tec M , Srivastava A , George GE , Cegan JC , Dettwiller ID , England WP , Farthing MW , Hunter RH , Lafferty B , Linkov I , Mayo ML , Parno MD , Rowland MA , Trump BD , Zhang-James Y , Chen S , Faraone SV , Hess J , Morley CP , Salekin A , Wang D , Corsetti SM , Baer TM , Eisenberg MC , Falb K , Huang Y , Martin ET , McCauley E , Myers RL , Schwarz T , Sheldon D , Gibson GC , Yu R , Gao L , Ma Y , Wu D , Yan X , Jin X , Wang YX , Chen Y , Guo L , Zhao Y , Gu Q , Chen J , Wang L , Xu P , Zhang W , Zou D , Biegel H , Lega J , McConnell S , Nagraj VP , Guertin SL , Hulme-Lowe C , Turner SD , Shi Y , Ban X , Walraven R , Hong QJ , Kong S , van de Walle A , Turtle JA , Ben-Nun M , Riley S , Riley P , Koyluoglu U , DesRoches D , Forli P , Hamory B , Kyriakides C , Leis H , Milliken J , Moloney M , Morgan J , Nirgudkar N , Ozcan G , Piwonka N , Ravi M , Schrader C , Shakhnovich E , Siegel D , Spatz R , Stiefeling C , Wilkinson B , Wong A , Cavany S , España G , Moore S , Oidtman R , Perkins A , Kraus D , Kraus A , Gao Z , Bian J , Cao W , Lavista Ferres J , Li C , Liu TY , Xie X , Zhang S , Zheng S , Vespignani A , Chinazzi M , Davis JT , Mu K , Pastore YPiontti A , Xiong X , Zheng A , Baek J , Farias V , Georgescu A , Levi R , Sinha D , Wilde J , Perakis G , Bennouna MA , Nze-Ndong D , Singhvi D , Spantidakis I , Thayaparan L , Tsiourvas A , Sarker A , Jadbabaie A , Shah D , Della Penna N , Celi LA , Sundar S , Wolfinger R , Osthus D , Castro L , Fairchild G , Michaud I , Karlen D , Kinsey M , Mullany LC , Rainwater-Lovett K , Shin L , Tallaksen K , Wilson S , Lee EC , Dent J , Grantz KH , Hill AL , Kaminsky J , Kaminsky K , Keegan LT , Lauer SA , Lemaitre JC , Lessler J , Meredith HR , Perez-Saez J , Shah S , Smith CP , Truelove SA , Wills J , Marshall M , Gardner L , Nixon K , Burant JC , Wang L , Gao L , Gu Z , Kim M , Li X , Wang G , Wang Y , Yu S , Reiner RC , Barber R , Gakidou E , Hay SI , Lim S , Murray C , Pigott D , Gurung HL , Baccam P , Stage SA , Suchoski BT , Prakash BA , Adhikari B , Cui J , Rodríguez A , Tabassum A , Xie J , Keskinocak P , Asplund J , Baxter A , Oruc BE , Serban N , Arik SO , Dusenberry M , Epshteyn A , Kanal E , Le LT , Li CL , Pfister T , Sava D , Sinha R , Tsai T , Yoder N , Yoon J , Zhang L , Abbott S , Bosse NI , Funk S , Hellewell J , Meakin SR , Sherratt K , Zhou M , Kalantari R , Yamana TK , Pei S , Shaman J , Li ML , Bertsimas D , Skali Lami O , Soni S , Tazi Bouardi H , Ayer T , Adee M , Chhatwal J , Dalgic OO , Ladd MA , Linas BP , Mueller P , Xiao J , Wang Y , Wang Q , Xie S , Zeng D , Green A , Bien J , Brooks L , Hu AJ , Jahja M , McDonald D , Narasimhan B , Politsch C , Rajanala S , Rumack A , Simon N , Tibshirani RJ , Tibshirani R , Ventura V , Wasserman L , O'Dea EB , Drake JM , Pagano R , Tran QT , Ho LST , Huynh H , Walker JW , Slayton RB , Johansson MA , Biggerstaff M , Reich NG .
Proc Natl Acad Sci U S A 2022 119 (15) e2113561119
VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data.
Wagner DD , Marine RL , Ramos E , Ng TFF , Castro CJ , Okomo-Adhiambo M , Harvey K , Doho G , Kelly R , Jain Y , Tatusov RL , Silva H , Rota PA , Khan AN , Oberste MS .
Microbiol Spectr 2022 10 (2) e0256421 type
Household transmission of SARS-CoV-2 Alpha variant - United States, 2021.
Donnelly MAP , Chuey MR , Soto R , Schwartz NG , Chu VT , Konkle SL , Sleweon S , Ruffin J , Haberling DL , Guagliardo SAJ , Stoddard RA , Anderson RD , Morgan CN , Rossetti R , McCormick DW , Magleby R , Sheldon SW , Dietrich EA , Uehara A , Retchless AC , Tong S , Folster JM , Drobeniuc J , Petway ME , Austin B , Stous S , McDonald E , Jain S , Hudziec MM , Stringer G , Albanese BA , Totten SE , Staples JE , Killerby ME , Hughes L , Matanock A , Beatty M , Tate JE , Kirking HL , Hsu CH .
Clin Infect Dis 2022 75 (1) e122-e132 type
Rapid Assessment and Containment of Candida auris Transmission in Postacute Care Settings-Orange County, California, 2019.
Karmarkar EN , O'Donnell K , Prestel C , Forsberg K , Gade L , Jain S , Schan D , Chow N , McDermott D , Rossow J , Toda M , Ruiz R , Hun S , Dale JL , Gross A , Maruca T , Glowicz J , Brooks R , Bagheri H , Nelson T , Gualandi N , Khwaja Z , Horwich-Scholefield S , Jacobs J , Cheung M , Walters M , Jacobs-Slifka K , Stone ND , Mikhail L , Chaturvedi S , Klein L , Vagnone PS , Schneider E , Berkow EL , Jackson BR , Vallabhaneni S , Zahn M , Epson E .
Ann Intern Med 2021 174 (11) 1554-1562 type
Death From Primary Amebic Meningoencephalitis After Recreational Water Exposure During Recent Travel to India-Santa Clara County, California, 2020.
Harris GR , Karmarkar EN , Quenelle R , Chaille L , Madhok J , Tien V , Gupta J , Jain S , Liu M , Roy S , Narasimhan S , Kimura A , Cope JR , Ali IKM .
Open Forum Infect Dis 2021 8 (8) ofab322 type
Epidemiologic, immunologic, and virus characteristics in patients with paired SARS-CoV-2 serology and reverse transcription polymerase chain reaction testing.
Shragai T , Smith-Jeffcoat SE , Koh M , Schechter MC , Rebolledo PA , Kasinathan V , Wang Y , Hoffman A , Miller H , Tejada-Strop A , Jain S , Tamin A , Harcourt JL , Thornburg NJ , Wong P , Medrzycki M , Folster JM , Semenova V , Steward-Clark E , Drobenuic J , Biedron C , Stewart RJ , da Silva J , Kirking HL , Tate JE .
J Infect Dis 2021 225 (2) 229-237
Timely Intervention and Control of a Novel Coronavirus (COVID-19) Outbreak at a Large Skilled Nursing Facility - San Francisco, California, 2020.
Karmarkar E , Blanco I , Amornkul P , DuBois A , Deng X , Moonan PK , Rubenstein BL , Miller DA , Kennedy I , Yu J , Dauterman J , Ongpin M , Hathaway W , Hoo L , Trammell S , Ememu E , Yu G , Khwaja Z , Lu W , Talai N , Jain S , Louie J , Philip S , Federman S , Masinde G , Wadford DA , Bobba N , Stoltey J , Smith A , Epson E , Chiu C , Bennett A , Vasquez AM , Williams T .
Infect Control Hosp Epidemiol 2020 42 (10) 1-20 type
Whole Genome Sequencing to Identify Drivers of Carbapenem-Resistant Klebsiella pneumoniae Transmission Within and Between Regional Long-Term Acute Care Hospitals.
Han JH , Lapp Z , Bushman F , Lautenbach E , Goldstein EJC , Mattei L , Hofstaedter CE , Kim D , Nachamkin I , Garrigan C , Jain T , Bilker W , Wolford HM , Slayton RB , Wise J , Tolomeo P , Snitkin ES .
Antimicrob Agents Chemother 2019 63 (11) type
Use of TaqMan Array card for the detection of respiratory viral pathogens in children under 5 years old hospitalised with acute medical illness in Ballabgarh, Haryana, India.
Gaur B , Saha S , Iuliano AD , Rai SK , Krishnan A , Jain S , Whitaker B , Winchell J , Lal RB , Broor S .
Indian J Med Microbiol 2019 37 (1) 105-108
Antibodies to Enteroviruses in Cerebrospinal Fluid of Patients with Acute Flaccid Myelitis.
Mishra N , Ng TFF , Marine RL , Jain K , Ng J , Thakkar R , Caciula A , Price A , Garcia JA , Burns JC , Thakur KT , Hetzler KL , Routh JA , Konopka-Anstadt JL , Nix WA , Tokarz R , Briese T , Oberste MS , Lipkin WI .
mBio 2019 10 (4) type
Multidrug-Resistant Aspergillus fumigatus Carrying Mutations Linked to Environmental Fungicide Exposure - Three States, 2010-2017.
Beer KD , Farnon EC , Jain S , Jamerson C , Lineberger S , Miller J , Berkow EL , Lockhart SR , Chiller T , Jackson BR .
MMWR Morb Mortal Wkly Rep 2018 67 (38) 1064-1067 type
Identification and characterization of novel mosquito-borne (Kammavanpettai virus) and tick-borne (Wad Medani) reoviruses isolated in India.
Yadav PD , Shete AM , Nyayanit DA , Albarino CG , Jain S , Guerrero LW , Kumar S , Patil DY , Nichol ST , Mourya DT .
J Gen Virol 2018 99 (8) 991-1000 type
Taxonomy of the family Arenaviridae and the order Bunyavirales: update 2018.
Maes P , Alkhovsky SV , Bao Y , Beer M , Birkhead M , Briese T , Buchmeier MJ , Calisher CH , Charrel RN , Choi IR , Clegg CS , de la Torre JC , Delwart E , DeRisi JL , Di Bello PL , Di Serio F , Digiaro M , Dolja VV , Drosten C , Druciarek TZ , Du J , Ebihara H , Elbeaino T , Gergerich RC , Gillis AN , Gonzalez JJ , Haenni AL , Hepojoki J , Hetzel U , Ho T , Hong N , Jain RK , Jansen van Vuren P , Jin Q , Jonson MG , Junglen S , Keller KE , Kemp A , Kipar A , Kondov NO , Koonin EV , Kormelink R , Korzyukov Y , Krupovic M , Lambert AJ , Laney AG , LeBreton M , Lukashevich IS , Marklewitz M , Markotter W , Martelli GP , Martin RR , Mielke-Ehret N , Muhlbach HP , Navarro B , Ng TFF , Nunes MRT , Palacios G , Paweska JT , Peters CJ , Plyusnin A , Radoshitzky SR , Romanowski V , Salmenpera P , Salvato MS , Sanfacon H , Sasaya T , Schmaljohn C , Schneider BS , Shirako Y , Siddell S , Sironen TA , Stenglein MD , Storm N , Sudini H , Tesh RB , Tzanetakis IE , Uppala M , Vapalahti O , Vasilakis N , Walker PJ , Wang G , Wang L , Wang Y , Wei T , Wiley MR , Wolf YI , Wolfe ND , Wu Z , Xu W , Yang L , Yang Z , Yeh SD , Zhang YZ , Zheng Y , Zhou X , Zhu C , Zirkel F , Kuhn JH .
Arch Virol 2018 163 (8) 2295-2310
Viral Diversity of House Mice in New York City.
Williams SH , Che X , Garcia JA , Klena JD , Lee B , Muller D , Ulrich W , Corrigan RM , Nichol S , Jain K , Lipkin WI .
mBio 2018 9 (2) type
Rhinovirus Viremia in Patients Hospitalized with Community Acquired Pneumonia.
Lu X , Schneider E , Jain S , Bramley AM , Hymas W , Stockmann C , Ampofo K , Arnold SR , Williams DJ , Self WH , Patel A , Chappell JD , Grijalva CG , Anderson EJ , Wunderink RG , McCullers JA , Edwards KM , Pavia AT , Erdman DD .
J Infect Dis 2017 216 (9) 1104-1111
Human Bocavirus Capsid Messenger RNA Detection in Children With Pneumonia.
Schlaberg R , Ampofo K , Tardif KD , Stockmann C , Simmon KE , Hymas W , Flygare S , Kennedy B , Blaschke A , Eilbeck K , Yandell M , McCullers JA , Williams DJ , Edwards K , Arnold SR , Bramley A , Jain S , Pavia AT .
J Infect Dis 2017 216 (6) 688-696
Efficient detection of viral transmissions with Next-Generation Sequencing data.
Rytsareva I , Campo DS , Zheng Y , Sims S , Thankachan SV , Tetik C , Chirag J , Chockalingam SP , Sue A , Aluru S , Khudyakov Y .
BMC Genomics 2017 18 372
Viral Pathogen Detection by Metagenomics and Pan Viral Group PCR in Children with Pneumonia Lacking Identifiable Etiology.
Schlaberg R , Queen K , Simmon K , Tardif K , Stockmann C , Flygare S , Kennedy B , Voelkerding K , Bramley A , Zhang J , Eilbeck K , Yandell M , Jain S , Pavia AT , Tong S , Ampofo K .
J Infect Dis 2017 215 (9) 1407-1415
Serology Enhances Molecular Diagnosis of Respiratory Virus Infections Other than Influenza in Children and Adults Hospitalized with Community-Acquired Pneumonia.
Zhang Y , Sakthivel SK , Bramley A , Jain S , Haynes A , Chappell JD , Hymas W , Lenny N , Patel A , Qi C , Ampofo K , Arnold SR , Self WH , Williams DJ , Hillyard D , Anderson EJ , Grijalva CG , Zhu Y , Wunderink RG , Edwards KM , Pavia AT , McCullers JA , Erdman DD .
J Clin Microbiol 2016 55 (1) 79-89
Association of sputum microbiota profiles with severity of community-acquired pneumonia in children.
Pettigrew MM , Gent JF , Kong Y , Wade M , Gansebom S , Bramley AM , Jain S , Arnold SL , McCullers JA .
BMC Infect Dis 2016 16 317
Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling.
Flygare S , Simmon K , Miller C , Qiao Y , Kennedy B , Di Sera T , Graf EH , Tardif KD , Kapusta A , Rynearson S , Stockmann C , Queen K , Tong S , Voelkerding KV , Blaschke A , Byington CL , Jain S , Pavia A , Ampofo K , Eilbeck K , Marth G , Yandell M , Schlaberg R .
Genome Biol 2016 17 (1) 111
Identification of Bacterial and Viral Codetections With Mycoplasma pneumoniae Using the TaqMan Array Card in Patients Hospitalized With Community-Acquired Pneumonia.
Diaz MH , Cross KE , Benitez AJ , Hicks LA , Kutty P , Bramley AM , Chappell JD , Hymas W , Patel A , Qi C , Williams DJ , Arnold SR , Ampofo K , Self WH , Grijalva CG , Anderson EJ , McCullers JA , Pavia AT , Wunderink RG , Edwards KM , Jain S , Winchell JM .
Open Forum Infect Dis 2016 3 (2) ofw071
Community-acquired pneumonia hospitalization among children with neurologic disorders
Millman AJ , Finelli L , Bramley AM , Peacock G , Williams DJ , Arnold SR , Grijalva CG , Anderson EJ , McCullers JA , Ampofo K , Pavia AT , Edwards KM , Jain S .
J Pediatr 2016 173 188-195 e4
Multistate Outbreak of Respiratory Infections among Unaccompanied Children, June-July 2014.
Tomczyk S , Arriola CS , Beall B , Benitez A , Benoit SR , Berman L , Bresee J , da Gloria Carvalho M , Cohn A , Cross K , Diaz MH , Francois Watkins LK , Gierke R , Hagan JE , Harris A , Jain S , Kim L , Kobayashi M , Lindstrom S , McGee L , McMorrow M , Metcalf BL , Moore MR , Moura I , Nix WA , Nyangoma E , Oberste MS , Olsen SJ , Pimenta F , Socias C , Thurman K , Waller J , Waterman SH , Westercamp M , Wharton M , Whitney CG , Winchell JM , Wolff B , Kim C .
Clin Infect Dis 2016 63 (1) 48-56
Multicenter evaluation of clinical diagnostic methods for detection and isolation of Campylobacter spp. from stool
Fitzgerald C , Patrick M , Gonzalez A , Akin J , Polage CR , Wymore K , Gillim-Ross L , Xavier K , Sadlowski J , Monahan J , Hurd S , Dahlberg S , Jerris R , Watson R , Santovenia M , Mitchell D , Harrison C , Tobin-D'Angelo M , DeMartino M , Pentella M , Razeq J , Leonard C , Jung C , Achong-Bowe R , Evans Y , Jain D , Juni B , Leano F , Robinson T , Smith K , Gittelman RM , Garrigan C , Nachamkin I .
J Clin Microbiol 2016 54 (5) 1209-15
Molecular Detection and Characterization of Mycoplasma pneumoniae Among Patients Hospitalized With Community-Acquired Pneumonia in the United States.
Diaz MH , Benitez AJ , Cross KE , Hicks LA , Kutty P , Bramley AM , Chappell JD , Hymas W , Patel A , Qi C , Williams DJ , Arnold SR , Ampofo K , Self WH , Grijalva CG , Anderson EJ , McCullers JA , Pavia AT , Wunderink RG , Edwards KM , Jain S , Winchell JM .
Open Forum Infect Dis 2015 2 (3) ofv106
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