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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Apr 18, 2025. (Total: 6649 publications)
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Records 1-30 (of 65 Records)
Query Trace: Im S[original query]
Kalamari: a representative set of genomes of public health concern
Katz LS , Griswold T , Lindsey RL , Lauer AC , Im MS , Williams G , Halpin JL , Gómez GA , Kucerova Z , Morrison S , Page A , Den Bakker HC , Carleton HA .
Microbiol Resour Announc 2025 e0096324 type
Convergence of SARS-CoV-2 spike antibody levels to a population immune setpoint
Nilles EJ , Roberts K , de St Aubin M , Mayfield H , Restrepo AC , Garnier S , Abdalla G , Etienne MC , Duke W , Dumas D , Jarolim P , Oasan T , Peña F , Lopez B , Cruz L , Sanchez IM , Murray K , Baldwin M , Skewes-Ramm R , Paulino CT , Lau CL , Kucharski A .
EBioMedicine 2024 108 105319
A vision to the future: value-based laboratory medicine
Plebani M , Cadamuro J , Vermeersch P , Jovičić S , Ozben T , Trenti T , McMillan B , Lowe CR , Lennerz J , Macintyre E , Gabelli C , Sandberg S , Padoan A , Wiencek JR , Banfi G , Lubin IM , Orth M , Carobene A , Zima T , Cobbaert CM , van Schaik RHN , Lippi G .
Clin Chem Lab Med 2024
Two decades of molecular surveillance in Senegal reveal rapid changes in known drug resistance mutations over time
Ndiaye YD , Wong W , Thwing J , Schaffner SF , Brenneman KV , Tine A , Diallo MA , Deme AB , Sy M , Bei AK , Thiaw AB , Daniels R , Ndiaye T , Gaye A , Ndiaye IM , Toure M , Gadiaga N , Sene A , Sow D , Garba MN , Yade MS , Dieye B , Diongue K , Zoumarou D , Ndiaye A , Gomis JF , Fall FB , Ndiop M , Diallo I , Sene D , Macinnis B , Seck MC , Ndiaye M , Ngom B , Diedhiou Y , Mbaye AM , Ndiaye L , Sy N , Badiane AS , Hartl DL , Wirth DF , Volkman SK , Ndiaye D .
Malar J 2024 23 (1) 205 type
Newborn screening: from Guthrie to whole genome sequencing.
Caggana M , Jones EA , Shahied SI , Tanksley S , Hermerath CA , Lubin IM .
Public Health Rep 2013 128 Suppl 2 14-9
Effective communication of molecular genetic test results to primary care providers.
Scheuner MT , Edelen MO , Hilborne LH , Lubin IM .
Genet Med 2013 15 (6) 444-9
Vaccine-associated varicella and rubella infections in severe combined immunodeficiency with isolated CD4 lymphocytopenia and mutations in IL7R detected by tandem whole exome sequencing and chromosomal microarray.
Bayer DK , Martinez CA , Sorte HS , Forbes LR , Demmler-Harrison GJ , Hanson IC , Pearson NM , Noroski LM , Zaki SR , Bellini WJ , Leduc MS , Yang Y , Eng CM , Patel A , Rodningen OK , Muzny DM , Gibbs RA , Campbell IM , Shaw CA , Baker MW , Zhang V , Lupski JR , Orange JS , Seeborg FO , Stray-Pedersen A .
Clin Exp Immunol 2014 178 (3) 459-69
Rapid identification of enteric bacteria from whole genome sequences using average nucleotide identity metrics
Lindsey RL , Gladney LM , Huang AD , Griswold T , Katz LS , Dinsmore BA , Im MS , Kucerova Z , Smith PA , Lane C , Carleton HA .
Front Microbiol 2023 14 1225207 type
Malaria surveillance reveals parasite relatedness, signatures of selection, and correlates of transmission across Senegal
Schaffner SF , Badiane A , Khorgade A , Ndiop M , Gomis J , Wong W , Ndiaye YD , Diedhiou Y , Thwing J , Seck MC , Early A , Sy M , Deme A , Diallo MA , Sy N , Sene A , Ndiaye T , Sow D , Dieye B , Ndiaye IM , Gaye A , Ndiaye A , Battle KE , Proctor JL , Bever C , Fall FB , Diallo I , Gaye S , Sene D , Hartl DL , Wirth DF , MacInnis B , Ndiaye D , Volkman SK .
Nat Commun 2023 14 (1) 7268 type
Evaluation of whole and core genome multilocus sequence typing allele schemes for Salmonella enterica outbreak detection in a national surveillance network, PulseNet USA
Leeper MM , Tolar BM , Griswold T , Vidyaprakash E , Hise KB , Williams GM , Im SB , Chen JC , Pouseele H , Carleton HA .
Front Microbiol 2023 14 1254777 type
Characterization of a nonagglutinating toxigenic vibrio cholerae isolate
Gladney LM , Griswold T , Turnsek M , Im MS , Parsons MMB , Katz LS , Tarr CL , Lee CC .
Microbiol Spectr 2023 11 (3) e0018223
Evaluation of core genome and whole genome multilocus sequence typing schemes for Campylobacter jejuni and Campylobacter coli outbreak detection in the USA
Joseph LA , Griswold T , Vidyaprakash E , Im SB , Williams GM , Pouseele HA , Hise KB , Carleton HA .
Microb Genom 2023 9 (5) type
The clinical laboratory is an integral component to health care delivery : An expanded representation of the total testing process
Lubin IM , Astles JR , Bunn JD , Cornish NE , Lazaro G , Marshall AA , Stang HL , De Jesús VR .
Am J Clin Pathol 2023 160 (2) 124-129
Monitoring temporal changes in SARS-CoV-2 spike antibody levels and variant-specific risk for infection, Dominican Republic, March 2021-August 2022
Nilles EJ , de St Aubin M , Dumas D , Duke W , Etienne MC , Abdalla G , Jarolim P , Oasan T , Garnier S , Iihoshi N , Lopez B , de la Cruz L , Puello YC , Baldwin M , Roberts KW , Peña F , Durski K , Sanchez IM , Gunter SM , Kneubehl AR , Murray KO , Lino A , Strobel S , Baez AA , Lau CL , Kucharski A , Gutiérrez EZ , Skewes-Ramm R , Vasquez M , Paulino CT .
Emerg Infect Dis 2023 29 (4) 723-733
Cronobacter sakazakii Infections in Two Infants Linked to Powdered Infant Formula and Breast Pump Equipment - United States, 2021 and 2022.
Haston JC , Miko S , Cope JR , McKeel H , Walters C , Joseph LA , Griswold T , Katz LS , Andújar AA , Tourdot L , Rounds J , Vagnone P , Medus C , Harris J , Geist R , Neises D , Wiggington A , Smith T , Im MS , Wheeler C , Smith P , Carleton HA , Lee CC .
MMWR Morb Mortal Wkly Rep 2023 72 (9) 223-226 type
Genome Sequences from a Reemergence of Vibrio cholerae in Haiti, 2022 Reveal Relatedness to Previously Circulating Strains.
Walters C , Chen J , Stroika S , Katz LS , Turnsek M , Compère V , Im MS , Gomez S , McCullough A , Landaverde C , Putney J , Caidi H , Folster J , Carleton HA , Boncy J , Lee CC .
J Clin Microbiol 2023 61 (3) e0014223 type
Tracking immune correlates of protection for emerging SARS-CoV-2 variants.
Nilles EJ , Paulino CT , de St Aubin M , Duke W , Jarolim P , Sanchez IM , Murray KO , Lau CL , Gutiérrez EZ , Ramm RS , Vasquez M , Kucharski A .
Lancet Infect Dis 2023 23 (2) 153-154 type
A Novel Information-Theory-Based Genetic Distance That Approximates Phenotypic Differences.
Campo DS , Mosa A , Khudyakov Y .
J Comput Biol 2023 30 (4) 420-431 type
Retrospective molecular investigation of Mayaro and Oropouche viruses at the human-animal interface in West-central Brazil, 2016-2018.
Dias HG , de Lima RC , Barbosa LS , Souza TMA , Badolato-Correa J , Maia LMS , Ferreira RDS , Neves Nads , Costa MCS , Martins LR , Souza EM , Carvalho MDS , Araujo-Oliveira A , Marques WA , Sabino-Santos G , Marques MS , Macedo GC , Nantes WAG , Santos FM , Netto CC , Morgado TO , Bianchini MA , Correa SHR , Almeida JR , Campos LP , Souza IM , Barreto WTG , Porfírio G , Alencar JAF , Herrera HM , Shlessarenko RD , Cunha RVD , Azeredo EL , Salyer SJ , Komar N , Pauvolid-Corrêa A , Dos Santos FB .
PLoS One 2022 17 (11) e0277612 type
Cleaning of anthropometric data from PCORnet electronic health records using automated algorithms.
Lin PD , Rifas-Shiman SL , Aris IM , Daley MF , Janicke DM , Heerman WJ , Chudnov DL , Freedman DS , Block JP .
JAMIA Open 2022 5 (4) ooac089
Vibrio tarriae sp. nov., a novel member of the Cholerae clade.
Islam MT , Liang K , Orata FD , Im MS , Alam M , Lee CC , Boucher YF .
Int J Syst Evol Microbiol 2022 72 (9)
Determining the lower limit of detection required for HCV viral load assay for test of cure following direct-acting antiviral-based treatment regimens: Evidence from a global data set.
Morgan JR , Marsh E , Savinkina A , Shilton S , Shadaker S , Tsertsvadze T , Kamkamidze G , Alkhazashvili M , Morgan T , Belperio P , Backus L , Doss W , Esmat G , Hassany M , Elsharkawy A , Elakel W , Mehrez M , Foster GR , Wose K , Chew KW , Chasela CS , Sanne IM , Thanung YM , Loarec A , Aslam K , Balkan S , Easterbrook PJ , Linas BP .
J Viral Hepat 2022 29 (6) 474-486 type
Recommended reporting items for epidemic forecasting and prediction research: The EPIFORGE 2020 guidelines.
Pollett S , Johansson MA , Reich NG , Brett-Major D , Del Valle SY , Venkatramanan S , Lowe R , Porco T , Berry IM , Deshpande A , Kraemer MUG , Blazes DL , Pan-Ngum W , Vespigiani A , Mate SE , Silal SP , Kandula S , Sippy R , Quandelacy TM , Morgan JJ , Ball J , Morton LC , Althouse BM , Pavlin J , van Panhuis W , Riley S , Biggerstaff M , Viboud C , Brady O , Rivers C .
PLoS Med 2021 18 (10) e1003793 type
Household transmission of influenza A and B within a prospective cohort during the 2013-2014 and 2014-2015 seasons.
Dahlgren FS , Foppa IM , Stockwell MS , Vargas CY , LaRussa P , Reed C .
Stat Med 2021 40 (28) 6260-6276
Creation of an Expert Curated Variant List for Clinical Genomic Test Development and Validation: A ClinGen and GeT-RM Collaborative Project.
Wilcox E , Harrison SM , Lockhart E , Voelkerding K , Lubin IM , Rehm HL , Kalman L , Funke B .
J Mol Diagn 2021 23 (11) 1500-1505
The genomic epidemiology of multi-drug resistant invasive non-typhoidal Salmonella in selected sub-Saharan African countries.
Park SE , Pham DT , Pak GD , Panzner U , Maria Cruz Espinoza L , von Kalckreuth V , Im J , Mogeni OD , Schütt-Gerowitt H , Crump JA , Breiman RF , Adu-Sarkodie Y , Owusu-Dabo E , Rakotozandrindrainy R , Bassiahi Soura A , Aseffa A , Gasmelseed N , Sooka A , Keddy KH , May J , Aaby P , Biggs HM , Hertz JT , Montgomery JM , Cosmas L , Olack B , Fields B , Sarpong N , Razafindrabe TJL , Raminosoa TM , Kabore LP , Sampo E , Teferi M , Yeshitela B , El Tayeb MA , Krumkamp R , Dekker DM , Jaeger A , Tall A , Gassama A , Niang A , Bjerregaard-Andersen M , Løfberg SV , Deerin JF , Park JK , Konings F , Carey ME , Van Puyvelde S , Ali M , Clemens J , Dougan G , Baker S , Marks F .
BMJ Glob Health 2021 6 (8) type
Epidemiology of anal human papillomavirus infection and high-grade squamous intraepithelial lesions in 29 900 men according to HIV status, sexuality, and age: a collaborative pooled analysis of 64 studies.
Wei F , Gaisa MM , D'Souza G , Xia N , Giuliano AR , Hawes SE , Gao L , Cheng SH , Donà MG , Goldstone SE , Schim van der Loeff MF , Neukam K , Meites E , Poynten IM , Dai J , Combes JD , Wieland U , Burgos J , Wilkin TJ , Hernandez AL , Iribarren Díaz M , Hidalgo-Tenorio C , Valencia Arredondo M , Nyitray AG , Wentzensen N , Chow EP , Smelov V , Nowak RG , Phanuphak N , Woo YL , Choi Y , Hu Y , Schofield AM , Woestenberg PJ , Chikandiwa AT , Hickey AC , de Pokomandy A , Murenzi G , Péré H , Del Pino M , Ortiz AP , Charnot-Katsikas A , Liu X , Chariyalertsak S , Strong C , Ong JJ , Yunihastuti E , Etienney I , Ferré VM , Zou H , Segondy M , Chinyowa S , Alberts CJ , Clifford GM .
Lancet HIV 2021 8 (9) e531-e543
Application of MALDI-TOF mass spectrometry, and DNA sequencing-based SLST and MLST analysis for the identification of Cronobacter spp. isolated from environmental surveillance samples.
Sulaiman IM , Tang K , Segars K , Miranda N , Sulaiman N , Simpson S .
Arch Microbiol 2021 203 (8) 4813-4820 type
Population analysis of Vibrio cholerae in aquatic reservoirs reveals a novel sister species (Vibrio paracholerae sp. nov.) with a history of association with humans.
Islam MT , Nasreen T , Kirchberger P , Liang KYH , Orata FD , Johura FT , Hussain NAS , Im MS , Tarr CL , Alam M , Boucher YF .
Appl Environ Microbiol 2021 87 (17) Aem0042221 type
Molecular diagnostic assays for the detection of common bacterial meningitis pathogens: A narrative review.
Diallo K , Feteh VF , Ibe L , Antonio M , Caugant DA , du Plessis M , Deghmane AE , Feavers IM , Fernandez K , Fox LM , Rodrigues CMC , Ronveaux O , Taha MK , Wang X , Brueggemann AB , Maiden MCJ , Harrison OB .
EBioMedicine 2021 65 103274
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