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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Nov 04, 2024. (Total: 6390 publications)
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Records 1-30 (of 43 Records)
Query Trace: Hawkins P[original query]
Risk of clade II mpox associated with intimate and nonintimate close contact among men who have sex with men and transgender adults - United States, August 2022-July 2023
Chard AN , Dalton AF , Diallo AO , Moulia DL , Deputy NP , Zecca IB , Quilter LAS , Kachur RE , McCollum AM , Rowlands JV , Britton AN , Fisher R , Chai SJ , Licherdell E , Still WL , Morris AL , Castilho JL , Markus TM , Morrow AS , Danza P , Hansen AP , Ali SI , Wegner CW , Weber R , Betancourt GS , Zipprich J , Sutton M , Pathela P , Hawkins S , Wendel KA , Feldstein LR .
MMWR Morb Mortal Wkly Rep 2024 73 (40) 896-902
Impact of pneumococcal conjugate vaccines on invasive pneumococcal disease-causing lineages among South African children
Lekhuleni C , Ndlangisa K , Gladstone RA , Chochua S , Metcalf BJ , Li Y , Kleynhans J , de Gouveia L , Hazelhurst S , Ferreira ADS , Skosana H , Walaza S , Quan V , Meiring S , Hawkins PA , McGee L , Bentley SD , Cohen C , Lo SW , von Gottberg A , du Plessis M .
Nat Commun 2024 15 (1) 8401 type
Molecular characterization of Streptococcus pneumoniae causing disease among children in Nigeria during the introduction of PCV10 (GSK)
Lo SW , Hawkins PA , Jibir B , Hassan-Hanga F , Gambo M , Olaosebikan R , Olanipekun G , Munir H , Kocmich N , Rezac-Elgohary A , Gambo S , Bagenda D , Fey P , Breiman RF , McGee L , Bentley SD , Obaro SK .
Microb Genom 2023 9 (9) type
Novel pneumococcal capsule type 33E results from the inactivation of glycosyltransferase WciE in vaccine type 33F
Ganaie FA , Saad JS , Lo SW , McGee L , van Tonder AJ , Hawkins PA , Calix JJ , Bentley SD , Nahm MH .
J Biol Chem 2023 299 (9) 105085 type
Discovery and Characterization of Pneumococcal Serogroup 36 Capsule Subtypes, Serotypes 36A and 36B.
Ganaie FA , Saad JS , Lo SW , McGee L , Bentley SD , van Tonder AJ , Hawkins P , Keenan JD , Calix JJ , Nahm MH .
J Clin Microbiol 2023 61 (4) e0002423
Key features of pneumococcal isolates recovered in Central and Northwestern Russia in 2011-2018 determined through whole-genome sequencing.
Egorova E , Kumar N , Gladstone RA , Urban Y , Voropaeva E , Chaplin AV , Rumiantseva E , Svistunova TS , Hawkins PA , Klugman KP , Breiman RF , McGee L , Bentley SD , Lo SW .
Microb Genom 2022 8 (9)
Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study.
Lo SW , Mellor K , Cohen R , Alonso AR , Belman S , Kumar N , Hawkins PA , Gladstone RA , von Gottberg A , Veeraraghavan B , Ravikumar KL , Kandasamy R , Pollard SAJ , Saha SK , Bigogo G , Antonio M , Kwambana-Adams B , Mirza S , Shakoor S , Nisar I , Cornick JE , Lehmann D , Ford RL , Sigauque B , Turner P , Moïsi J , Obaro SK , Dagan R , Diawara I , SkoczyÅ„ska A , Wang H , Carter PE , Klugman KP , Rodgers G , Breiman RF , McGee L , Bentley SD , Almagro CM , Varon E .
Lancet Microbe 2022 3 (10) e735-e743 type
Influenza Activity and Composition of the 2022-23 Influenza Vaccine - United States, 2021-22 Season.
Merced-Morales A , Daly P , Abd Elal AI , Ajayi N , Annan E , Budd A , Barnes J , Colon A , Cummings CN , Iuliano AD , DaSilva J , Dempster N , Garg S , Gubareva L , Hawkins D , Howa A , Huang S , Kirby M , Kniss K , Kondor R , Liddell J , Moon S , Nguyen HT , O'Halloran A , Smith C , Stark T , Tastad K , Ujamaa D , Wentworth DE , Fry AM , Dugan VG , Brammer L .
MMWR Morb Mortal Wkly Rep 2022 71 (29) 913-919 type
Distinct Streptococcus pneumoniae cause invasive disease in Papua New Guinea.
Mellor KC , Lo S , Yoannes M , Michael A , Orami T , Greenhill AR , Breiman RF , Hawkins P , McGee L , Bentley SD , Ford RL , Lehmann D .
Microb Genom 2022 8 (7)
Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.
Karthikeyan S , Levy JI , De Hoff P , Humphrey G , Birmingham A , Jepsen K , Farmer S , Tubb HM , Valles T , Tribelhorn CE , Tsai R , Aigner S , Sathe S , Moshiri N , Henson B , Mark AM , Hakim A , Baer NA , Barber T , Belda-Ferre P , Chacón M , Cheung W , Cresini ES , Eisner ER , Lastrella AL , Lawrence ES , Marotz CA , Ngo TT , Ostrander T , Plascencia A , Salido RA , Seaver P , Smoot EW , McDonald D , Neuhard RM , Scioscia AL , Satterlund AM , Simmons EH , Abelman DB , Brenner D , Bruner JC , Buckley A , Ellison M , Gattas J , Gonias SL , Hale M , Hawkins F , Ikeda L , Jhaveri H , Johnson T , Kellen V , Kremer B , Matthews G , McLawhon RW , Ouillet P , Park D , Pradenas A , Reed S , Riggs L , Sanders A , Sollenberger B , Song A , White B , Winbush T , Aceves CM , Anderson C , Gangavarapu K , Hufbauer E , Kurzban E , Lee J , Matteson NL , Parker E , Perkins SA , Ramesh KS , Robles-Sikisaka R , Schwab MA , Spencer E , Wohl S , Nicholson L , McHardy IH , Dimmock DP , Hobbs CA , Bakhtar O , Harding A , Mendoza A , Bolze A , Becker D , Cirulli ET , Isaksson M , Schiabor Barrett KM , Washington NL , Malone JD , Schafer AM , Gurfield N , Stous S , Fielding-Miller R , Garfein RS , Gaines T , Anderson C , Martin NK , Schooley R , Austin B , MacCannell DR , Kingsmore SF , Lee W , Shah S , McDonald E , Yu AT , Zeller M , Fisch KM , Longhurst C , Maysent P , Pride D , Khosla PK , Laurent LC , Yeo GW , Andersen KG , Knight R .
Nature 2022 609 (7925) 101-108
Population genomics of pneumococcal carriage in South Africa following the introduction of the 13-valent pneumococcal conjugate vaccine (PCV13) immunization.
Javaid N , Olwagen C , Nzenze S , Hawkins P , Gladstone R , McGee L , Breiman RF , Bentley SD , Madhi SA , Lo S .
Microb Genom 2022 8 (6) type
Genetic background of Cambodian pneumococcal carriage isolates following pneumococcal conjugate vaccine 13.
Belman S , Soeng S , Soputhy C , Gladstone R , Hawkins PA , Breiman RF , McGee L , Bentley SD , Lo SW , Turner P .
Microb Genom 2022 8 (6) type
A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV.
Ndlangisa KM , du Plessis M , Lo S , de Gouveia L , Chaguza C , Antonio M , Kwambana-Adams B , Cornick J , Everett DB , Dagan R , Hawkins PA , Beall B , Corso A , Grassi Almeida SC , Ochoa TJ , Obaro S , Shakoor S , Donkor ES , Gladstone RA , Ho PL , Paragi M , Doiphode S , Srifuengfung S , Ford R , Moïsi J , Saha SK , Bigogo G , Sigauque B , Eser Ö K , Elmdaghri N , Titov L , Turner P , Kumar KLR , Kandasamy R , Egorova E , Ip M , Breiman RF , Klugman KP , McGee L , Bentley SD , von Gottberg A , The Global Pneumococcal Sequencing Consortium .
Microb Genom 2022 8 (4) type
Collateral consequences of agricultural fungicides on pathogenic yeasts: a One Health perspective to tackle azole resistance.
Castelo-Branco D , Lockhart SR , Chen YC , Santos DA , Hagen F , Hawkins NJ , Lavergne RA , Meis J , Le Pape P , Rocha MFG , Sidrim JJC , Arendrup M , Morio F .
Mycoses 2021 65 (3) 303-311 type
Genomic surveillance of invasive Streptococcus pneumoniae isolates in the period pre-PCV10 and post-PCV10 introduction in Brazil.
Almeida SCG , Lo SW , Hawkins PA , Gladstone RA , Cassiolato AP , Klugman KP , Breiman RF , Bentley SD , McGee L , Brandileone MC .
Microb Genom 2021 7 (10) type
Population genetic structure, serotype distribution and antibiotic resistance of Streptococcus pneumoniae causing invasive disease in children in Argentina.
Gagetti P , Lo SW , Hawkins PA , Gladstone RA , Regueira M , Faccone D , Sireva-Argentina Group , Klugman KP , Breiman RF , McGee L , Bentley SD , Corso A .
Microb Genom 2021 7 (9) type
Streptococcus pneumoniae genomic datasets from an Indian population describing pre-vaccine evolutionary epidemiology using a whole genome sequencing approach.
Nagaraj G , Govindan V , Ganaie F , Venkatesha VT , Hawkins PA , Gladstone RA , McGee L , Breiman RF , Bentley SD , Klugman KP , Lo SW , Ravikumar KL .
Microb Genom 2021 7 (9)
Phylogeography and resistome of pneumococcal meningitis in West Africa before and after vaccine introduction.
Senghore M , Tientcheu PE , Worwui AK , Jarju S , Okoi C , Suso SMS , Foster-Nyarko E , Ebruke C , Sonko M , Kourna MH , Agossou J , Tsolenyanu E , Renner LA , Ansong D , Sanneh B , Cisse CB , Boula A , Miwanda B , Lo SW , Gladstone RA , Schwartz S , Hawkins P , McGee L , Klugman KP , Breiman RF , Bentley SD , Mwenda JM , Kwambana-Adams BA , Antonio M .
Microb Genom 2021 7 (7) type
A Nationwide Outbreak of Invasive Pneumococcal Disease in Israel Caused by Streptococcus Pneumoniae Serotype 2.
Dagan R , Ben-Shimol S , Benisty R , Regev-Yochay G , Lo SW , Bentley SD , Hawkins PA , McGee L , Ron M , Givon-Lavi N , Valinsky L , Rokney A .
Clin Infect Dis 2020 73 (11) e3768-e3777
Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates.
Gladstone RA , Lo SW , Goater R , Yeats C , Taylor B , Hadfield J , Lees JA , Croucher NJ , van Tonder AJ , Bentley LJ , Quah FX , Blaschke AJ , Pershing NL , Byington CL , Balaji V , Hryniewicz W , Sigauque B , Ravikumar KL , Almeida SCG , Ochoa TJ , Ho PL , du Plessis M , Ndlangisa KM , Cornick JE , Kwambana-Adams B , Benisty R , Nzenze SA , Madhi SA , Hawkins PA , Pollard AJ , Everett DB , Antonio M , Dagan R , Klugman KP , von Gottberg A , Metcalf BJ , Li Y , Beall BW , McGee L , Breiman RF , Aanensen DM , Bentley SD .
Microb Genom 2020 6 (5) type
A mosaic tetracycline resistance gene tet(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa.
Lo SW , Gladstone RA , van Tonder AJ , Du Plessis M , Cornick JE , Hawkins PA , Madhi SA , Nzenze SA , Kandasamy R , Ravikumar KL , Elmdaghri N , Kwambana-Adams B , Almeida SCG , Skoczynska A , Egorova E , Titov L , Saha SK , Paragi M , Everett DB , Antonio M , Klugman KP , Li Y , Metcalf BJ , Beall B , McGee L , Breiman RF , Bentley SD , von Gottberg A .
J Antimicrob Chemother 2019 75 (3) 512-520
Putative novel cps loci in a large global collection of pneumococci.
van Tonder AJ , Gladstone RA , Lo SW , Nahm MH , du Plessis M , Cornick J , Kwambana-Adams B , Madhi SA , Hawkins PA , Benisty R , Dagan R , Everett D , Antonio M , Klugman KP , von Gottberg A , Breiman RF , McGee L , Bentley SD .
Microb Genom 2019 5 (7)
Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study.
Lo SW , Gladstone RA , van Tonder AJ , Lees JA , du Plessis M , Benisty R , Givon-Lavi N , Hawkins PA , Cornick JE , Kwambana-Adams B , Law PY , Ho PL , Antonio M , Everett DB , Dagan R , von Gottberg A , Klugman KP , McGee L , Breiman RF , Bentley SD .
Lancet Infect Dis 2019 19 (7) 759-769
International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact.
Gladstone RA , Lo SW , Lees JA , Croucher NJ , van Tonder AJ , Corander J , Page AJ , Marttinen P , Bentley LJ , Ochoa TJ , Ho PL , du Plessis M , Cornick JE , Kwambana-Adams B , Benisty R , Nzenze SA , Madhi SA , Hawkins PA , Everett DB , Antonio M , Dagan R , Klugman KP , von Gottberg A , McGee L , Breiman RF , Bentley SD .
EBioMedicine 2019 43 338-346 type
Genome-wide association analyses of invasive pneumococcal isolates identify a missense bacterial mutation associated with meningitis.
Li Y , Metcalf BJ , Chochua S , Li Z , Walker H , Tran T , Hawkins PA , Gierke R , Pilishvili T , McGee L , Beall BW .
Nat Commun 2019 10 (1) 178 type
Global distribution of invasive serotype 35D Streptococcus pneumoniae post-PCV13 introduction.
Lo SW , Gladstone RA , van Tonder AJ , Hawkins PA , Kwambana-Adams B , Cornick JE , Madhi SA , Nzenze SA , du Plessis M , Kandasamy R , Carter PE , Koseoglu Eser O , Ho PL , Elmdaghri N , Shakoor S , Clarke SC , Antonio M , Everett DB , von Gottberg A , Klugman KP , McGee L , Breiman RF , Bentley SD .
J Clin Microbiol 2018 56 (7) type
Antimicrobial resistance determinants and susceptibility profiles of pneumococcal isolates recovered in Trinidad and Tobago.
Hawkins PA , Akpaka PE , Nurse-Lucas M , Gladstone R , Bentley SD , Breiman RF , McGee L , Swanston WH .
J Glob Antimicrob Resist 2017 11 148-151
Validation of ß-lactam minimum inhibitory concentration predictions for pneumococcal isolates with newly encountered penicillin binding protein (PBP) sequences.
Li Y , Metcalf BJ , Chochua S , Li Z , Gertz RE Jr , Walker H , Hawkins PA , Tran T , McGee L , Beall BW .
BMC Genomics 2017 18 (1) 621
Key features of invasive pneumococcal isolates recovered in Lima, Peru determined through whole genome sequencing.
Hawkins P , Mercado E , Chochua S , Castillo ME , Reyes I , Chaparro E , Gladstone R , Bentley SD , Breiman RF , Metcalf BJ , Beall B , Ochoa TJ , McGee L .
Int J Med Microbiol 2017 307 (7) 415-421
Cross-resistance to lincosamides, streptogramins A and pleuromutilins in Streptococcus agalactiae isolates from the USA.
Hawkins PA , Law CS , Metcalf BJ , Chochua S , Jackson DM , Westblade LF , Jerris R , Beall BW , McGee L .
J Antimicrob Chemother 2017 72 (7) 1886-1892
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