CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Nov 04, 2024. (Total: 6390 publications)

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Records 1-30 (of 30 Records)

Query Trace: Gulvik CA[original query]
Investigating anthrax-associated virulence genes among archival and contemporary bacillus cereus group genomes Sabin SJ , Beesley CA , Marston CK , Paisie TK , Gulvik CA , Sprenger GA , Gee JE , Traxler RM , Bell ME , McQuiston JR , Weiner ZP . Pathogens 2024 13 (10)
Detection of an emerging pathogen: A real time qualitative pcr assay targeting Haematospirillum jordaniae for EDTA whole blood and plasma clinical specimens Szewc AM , Humrighouse BW , Livingston K , Gulvik CA , Nicholson AC , McQuiston JR . Diagn Microbiol Infect Dis 2024 109 (4) 116310
Benchmark datasets for SARS-CoV-2 surveillance bioinformatics. Xiaoli L , Hagey JV , Park DJ , Gulvik CA , Young EL , Alikhan NF , Lawsin A , Hassell N , Knipe K , Oakeson KF , Retchless AC , Shakya M , Lo CC , Chain P , Page AJ , Metcalf BJ , Su M , Rowell J , Vidyaprakash E , Paden CR , Huang AD , Roellig D , Patel K , Winglee K , Weigand MR , Katz LS . PeerJ 2022 10 e13821
Strains Associated with Two 2020 Welder Anthrax Cases in the United States Belong to Separate Lineages within Bacillus cereus sensu lato. Carroll LM , Marston CK , Kolton CB , Gulvik CA , Gee JE , Weiner ZP , Kovac J . Pathogens 2022 11 (8)
Epidemiologic Investigation of Two Welder's Anthrax Cases Caused by Bacillus Cereus Group Bacteria: Occupational Link Established by Environmental Detection. Dawson P , Salzer JS , Schrodt CA , Feldmann K , Kolton CB , Gee JE , Marston CK , Gulvik CA , Elrod MG , Villarma A , Traxler RM , Negrón ME , Hendricks KA , Moulton-Meissner H , Rose LJ , Byers P , Taylor K , Ware D , Balsamo GA , Sokol T , Barrett B , Payne E , Zaheer S , Jung GO , Long S , Quijano R , LeBouf L , O'Sullivan B , Swaney E , Antonini JM , Perio MA , Weiner Z , Bower WA , Hoffmaster AR . Pathogens 2022 11 (8)
In silico analyses of penicillin binding proteins in Burkholderia pseudomallei uncovers SNPs with utility for phylogeography, species differentiation, and sequence typing. Mclaughlin HP , Gulvik CA , Sue D . PLoS Negl Trop Dis 2022 16 (4) e0009882
Software testing in microbial bioinformatics: a call to action. van der Putten BCL , Mendes CI , Talbot BM , de Korne-Elenbaas J , Mamede R , Vila-Cerqueira P , Coelho LP , Gulvik CA , Katz LS , The Asm Ngs Hackathon Participants . Microb Genom 2022 8 (3)
Multistate Outbreak of Melioidosis Associated with Imported Aromatherapy Spray. Gee JE , Bower WA , Kunkel A , Petras J , Gettings J , Bye M , Firestone M , Elrod MG , Liu L , Blaney DD , Zaldivar A , Raybern C , Ahmed FS , Honza H , Stonecipher S , O'Sullivan BJ , Lynfield R , Hunter M , Brennan S , Pavlick J , Gabel J , Drenzek C , Geller R , Lee C , Ritter JM , Zaki SR , Gulvik CA , Wilson WW , Beshearse E , Currie BJ , Webb JR , Weiner ZP , Negrón ME , Hoffmaster AR . N Engl J Med 2022 386 (9) 861-868
Genomic Surveillance for SARS-CoV-2 Variants: Predominance of the Delta (B.1.617.2) and Omicron (B.1.1.529) Variants - United States, June 2021-January 2022. Lambrou AS , Shirk P , Steele MK , Paul P , Paden CR , Cadwell B , Reese HE , Aoki Y , Hassell N , Caravas J , Kovacs NA , Gerhart JG , Ng HJ , Zheng XY , Beck A , Chau R , Cintron R , Cook PW , Gulvik CA , Howard D , Jang Y , Knipe K , Lacek KA , Moser KA , Paskey AC , Rambo-Martin BL , Nagilla RR , Rethchless AC , Schmerer MW , Seby S , Shephard SS , Stanton RA , Stark TJ , Uehara A , Unoarumhi Y , Bentz ML , Burhgin A , Burroughs M , Davis ML , Keller MW , Keong LM , Le SS , Lee JS , Madden Jr JC , Nobles S , Owouor DC , Padilla J , Sheth M , Wilson MM , Talarico S , Chen JC , Oberste MS , Batra D , McMullan LK , Halpin AL , Galloway SE , MacCannell DR , Kondor R , Barnes J , MacNeil A , Silk BJ , Dugan VG , Scobie HM , Wentworth DE . MMWR Morb Mortal Wkly Rep 2022 71 (6) 206-211
Notes from the Field: Fatal Anthrax Pneumonia in Welders and Other Metalworkers Caused by Bacillus cereus Group Bacteria Containing Anthrax Toxin Genes - U.S. Gulf Coast States, 1994-2020. Dawson P , Schrodt CA , Feldmann K , Traxler RM , Gee JE , Kolton CB , Marston CK , Gulvik CA , Antonini JM , Negrón ME , McQuiston JR , Hendricks K , Weiner Z , Balsamo GA , Sokol T , Byers P , Taylor K , Zaheer S , Long S , O'Sullivan B , de Perio MA , Hoffmaster AR , Salzer JS , Bower WA . MMWR Morb Mortal Wkly Rep 2021 70 (41) 1453-1454
Complete Genome Sequence of Rhodococcus sp. Strain W8901, a Human Clinical Specimen, Assembled Using MiSeq and MinION Sequence Data. Gulvik CA , Batra D , Howard DT , Sheth M , Humrighouse BW , Lee J , McQuiston JR , Lasker BA . Microbiol Resour Announc 2021 10 (35) e0061321
Complete and Circularized Bacterial Genome Sequence of Gordonia sp. Strain X0973 Gulvik CA , Batra D , Rowe LA , Sheth M , Nobles S , Lee JS , McQuiston JR , Lasker BA . Microbiol Resour Announc 2021 10 (9)
A real-time multiplex PCR assay for detection of the causative agents of rat bite fever, Streptobacillus moniliformis and zoonoticStreptobacillus species. Kelly AJ , Ivey ML , Gulvik CA , Humrighouse BW , McQuiston JR . Diagn Microbiol Infect Dis 2021 100 (2) 115335
Genomic Diversity of Burkholderia pseudomallei Isolates, Colombia. Duarte C , Montufar F , Moreno J , Sánchez D , Rodríguez JY , Torres AG , Morales S , Bautista A , Huertas MG , Myers JN , Gulvik CA , Elrod MG , Blaney DD , Gee JE . Emerg Infect Dis 2021 27 (2) 655-658
Genomic Diversity of Burkholderia pseudomallei in Ceara, Brazil. Gee JE , Gulvik CA , Castelo-Branco Dscm , Sidrim JJC , Rocha MFG , Cordeiro RA , Brilhante RSN , Bandeira Tjpg , Patrício I , Alencar LP , da Costa Ribeiro AK , Sheth M , Deka MA , Hoffmaster AR , Rolim D . mSphere 2021 6 (1)
Complete and Circularized Genome Assemblies of the Kroppenstedtia eburnea Genus Type Strain and the Kroppenstedtia pulmonis Species Type Strain with MiSeq and MinION Sequence Data. Gulvik CA , Batra D , Rowe LA , Sheth M , Humrighouse BW , Howard DT , Lee J , McQuiston JR , Lasker BA . Microbiol Resour Announc 2020 9 (44)
Division of the genus Chryseobacterium: Observation of discontinuities in amino acid identity values, a possible consequence of major extinction events, guides transfer of nine species to the genus Epilithonimonas , eleven species to the genus Kaistella , and three species to the genus Halpernia gen. nov., with description of Kaistella daneshvariae sp. nov. and Epilithonimonas vandammei sp. nov. derived from clinical specimens. Nicholson AC , Gulvik CA , Whitney AM , Humrighouse BW , Bell ME , Holmes B , Steigerwalt AG , Villarma A , Sheth M , Batra D , Rowe LA , Burroughs M , Pryor JC , Bernardet JF , Hugo C , Kämpfer P , Newman JD , McQuiston JR . Int J Syst Evol Microbiol 2020 70 (8) 4432-4450
Vagococcus bubulae sp. nov., isolated from ground beef, and Vagococcus vulneris sp. nov., isolated from a human foot wound. Shewmaker PL , Whitney AM , Gulvik CA , Humrighouse BW , Gartin J , Moura H , Barr JR , Moore ERB , Karlsson R , Pinto TCA , Teixeira LM . Int J Syst Evol Microbiol 2019 69 (8) 2268-2276
Streptacidiphilus bronchialis sp. nov., a ciprofloxacin-resistant bacterium from a human clinical specimen; reclassification of Streptomyces griseoplanus as Streptacidiphilus griseoplanus comb. nov. and emended description of the genus Streptacidiphilus. Nouioui I , Klenk HP , Igual JM , Gulvik CA , Lasker BA , McQuiston JR . Int J Syst Evol Microbiol 2019 69 (4) 1047-1056
Complete Genome Sequence of Nocardia farcinica W6977 T Obtained by Combining Illumina and PacBio Reads. Gulvik CA , Arthur RA , Humrighouse BW , Batra D , Rowe LA , Lasker BA , McQuiston JR . Microbiol Resour Announc 2019 8 (3)
A real-time multiplex PCR assay for detection of Elizabethkingia species, and differentiating between E. anophelis and E. meningoseptica . Kelly AJ , Karpathy SE , Gulvik CA , Ivey ML , Whitney AM , Bell ME , Nicholson AC , Humrighouse BH , McQuiston JR . J Clin Microbiol 2019 57 (4)
Genotypic differences between strains of the opportunistic pathogen Corynebacterium bovis isolated from humans, cows, and rodents. Cheleuitte-Nieves C , Gulvik CA , McQuiston JR , Humrighouse BW , Bell ME , Villarma A , Fischetti VA , Westblade LF , Lipman NS . PLoS One 2018 13 (12) e0209231
Complete Genome Sequence of Streptacidiphilus sp. Strain 15-057A, Obtained from Bronchial Lavage Fluid. Arthur RA , Gulvik CA , Humrighouse BW , Lasker BA , Batra D , Rowe LA , Igual JM , Nouioui I , Klenk HP , McQuiston JR . Microbiol Resour Announc 2018 7 (19)
Genomic Characterization and Copy Number Variation of Bacillus anthracis Plasmids pXO1 and pXO2 in a Historical Collection of 412 Strains. Pena-Gonzalez A , Rodriguez RLm , Marston CK , Gee JE , Gulvik CA , Kolton CB , Saile E , Frace M , Hoffmaster AR , Konstantinidis KT . mSystems 2018 3 (4)
Draft Reference Genome Sequence of Corynebacterium mastitidis 16-1433, Isolated From a Mouse Cheleuitte-Nieves C , Gulvik CA , Humrighouse BW , Bell ME , Villarma A , Westblade LF , Lipman NS , Fischetti VA , McQuiston JR . Genome Announc 2018 6 (7)
Twelve Complete Reference Genomes of Clinical Isolates in the Capnocytophaga Genus. Villarma A , Gulvik CA , Rowe LA , Sheth M , Juieng P , Nicholson AC , Loparev VN , McQuiston JR . Genome Announc 2017 5 (44)
Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov. Nicholson AC , Gulvik CA , Whitney AM , Humrighouse BW , Graziano J , Emery B , Bell M , Loparev V , Juieng P , Gartin J , Bizet C , Clermont D , Criscuolo A , Brisse S , McQuiston JR . Antonie Van Leeuwenhoek 2017 111 (1) 55-72
Phylogeography of Burkholderia pseudomallei Isolates, Western Hemisphere. Gee JE , Gulvik CA , Elrod MG , Batra D , Rowe LA , Sheth M , Hoffmaster AR . Emerg Infect Dis 2017 23 (7) 1133-1138
Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain. Perrin A , Larsonneur E , Nicholson AC , Edwards DJ , Gundlach KM , Whitney AM , Gulvik CA , Bell ME , Rendueles O , Cury J , Hugon P , Clermont D , Enouf V , Loparev V , Juieng P , Monson T , Warshauer D , Elbadawi LI , Walters MS , Crist MB , Noble-Wang J , Borlaug G , Rocha EPC , Criscuolo A , Touchon M , Davis JP , Holt KE , McQuiston JR , Brisse S . Nat Commun 2017 8 15483
Carbapenem-resistant Enterobacteriaceae transmission in health care facilities - Wisconsin, February-May 2015 Elbadawi LI , Borlaug G , Gundlach KM , Monson T , Warshauer D , Walters MS , Kallen A , Gulvik CA , Davis JP . MMWR Morb Mortal Wkly Rep 2016 65 (34) 906-909