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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Nov 04, 2024. (Total: 6390 publications)
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Records 1-30 (of 83 Records)
Query Trace: Fields B[original query]
PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testing and training
Griffiths EJ , Mendes I , Maguire F , Guthrie JL , Wee BA , Schmedes S , Holt K , Yadav C , Cameron R , Barclay C , Dooley D , MacCannell D , Chindelevitch L , Karsch-Mizrachi I , Waheed Z , Katz L , Petit Iii R , Dave M , Oluniyi P , Nasar MI , Raphenya A , Hsiao WWL , Timme RE .
Microb Genom 2024 10 (6) type
Genomics for antimicrobial resistance surveillance to support infection prevention and control in health-care facilities
Jauneikaite E , Baker KS , Nunn JG , Midega JT , Hsu LY , Singh SR , Halpin AL , Hopkins KL , Price JR , Srikantiah P , Egyir B , Okeke IN , Holt KE , Peacock SJ , Feasey NA .
Lancet Microbe 2023 4 (12) e1040-e1046 type
The Human Phenotype Ontology in 2024: phenotypes around the world
Gargano MA , Matentzoglu N , Coleman B , Addo-Lartey EB , Anagnostopoulos AV , Anderton J , Avillach P , Bagley AM , Bakštein E , Balhoff JP , Baynam G , Bello SM , Berk M , Bertram H , Bishop S , Blau H , Bodenstein DF , Botas P , Boztug K , Čady J , Callahan TJ , Cameron R , Carbon SJ , Castellanos F , Caufield JH , Chan LE , Chute CG , Cruz-Rojo J , Dahan-Oliel N , Davids JR , de Dieuleveult M , de Souza V , de Vries BBA , de Vries E , DePaulo JR , Derfalvi B , Dhombres F , Diaz-Byrd C , Dingemans AJM , Donadille B , Duyzend M , Elfeky R , Essaid S , Fabrizzi C , Fico G , Firth HV , Freudenberg-Hua Y , Fullerton JM , Gabriel DL , Gilmour K , Giordano J , Goes FS , Moses RG , Green I , Griese M , Groza T , Gu W , Guthrie J , Gyori B , Hamosh A , Hanauer M , Hanušová K , He YO , Hegde H , Helbig I , Holasová K , Hoyt CT , Huang S , Hurwitz E , Jacobsen JOB , Jiang X , Joseph L , Keramatian K , King B , Knoflach K , Koolen DA , Kraus ML , Kroll C , Kusters M , Ladewig MS , Lagorce D , Lai MC , Lapunzina P , Laraway B , Lewis-Smith D , Li X , Lucano C , Majd M , Marazita ML , Martinez-Glez V , McHenry TH , McInnis MG , McMurry JA , Mihulová M , Millett CE , Mitchell PB , Moslerová V , Narutomi K , Nematollahi S , Nevado J , Nierenberg AA , Čajbiková NN , Nurnberger JI Jr , Ogishima S , Olson D , Ortiz A , Pachajoa H , Perez de Nanclares G , Peters A , Putman T , Rapp CK , Rath A , Reese J , Rekerle L , Roberts AM , Roy S , Sanders SJ , Schuetz C , Schulte EC , Schulze TG , Schwarz M , Scott K , Seelow D , Seitz B , Shen Y , Similuk MN , Simon ES , Singh B , Smedley D , Smith CL , Smolinsky JT , Sperry S , Stafford E , Stefancsik R , Steinhaus R , Strawbridge R , Sundaramurthi JC , Talapova P , Tenorio Castano JA , Tesner P , Thomas RH , Thurm A , Turnovec M , van Gijn ME , Vasilevsky NA , Vlčková M , Walden A , Wang K , Wapner R , Ware JS , Wiafe AA , Wiafe SA , Wiggins LD , Williams AE , Wu C , Wyrwoll MJ , Xiong H , Yalin N , Yamamoto Y , Yatham LN , Yocum AK , Young AH , Yüksel Z , Zandi PP , Zankl A , Zarante I , Zvolský M , Toro S , Carmody LC , Harris NL , Munoz-Torres MC , Danis D , Mungall CJ , Köhler S , Haendel MA , Robinson PN .
Nucleic Acids Res 2023 52 D1333-D1346
Genetic liability for gastrointestinal inflammation disorders and association with gastrointestinal symptoms in children with and without autism
Morrill V , Benke K , Brinton J , Soke GN , Schieve LA , Fields V , Farzadegan H , Holingue C , Newschaffer CJ , Reynolds AM , Fallin MD , Ladd-Acosta C .
Am J Med Genet B Neuropsychiatr Genet 2023 195 (1) e32952
A global genomic analysis of Salmonella Concord reveals lineages with high antimicrobial resistance in Ethiopia
Cuypers WL , Meysman P , Weill FX , Hendriksen RS , Beyene G , Wain J , Nair S , Chattaway MA , Perez-Sepulveda BM , Ceyssens PJ , de Block T , Lee WWY , Pardos de la Gandara M , Kornschober C , Moran-Gilad J , Veldman KT , Cormican M , Torpdahl M , Fields PI , Černý T , Hardy L , Tack B , Mellor KC , Thomson N , Dougan G , Deborggraeve S , Jacobs J , Laukens K , Van Puyvelde S .
Nat Commun 2023 14 (1) 3517 type
Evaluation of the HIV drug resistance surveillance system in Mozambique, 2017-2018.
Nuvunga S , Langa DC , Baltazar CS , Sacarlal J , Rossetto E , Vubil A .
Pan Afr Med J 2022 43 162 type
Investigation of a Candida auris outbreak in a Skilled Nursing Facility - Virginia, United States, October 2020-June 2021.
Waters A , Chommanard C , Baltozer S , Angel LC , Abdelfattah R , Lyman M , Forsberg K , Misas E , Litvintseva AP , Fields V , Lineberger S , Bernard S .
Am J Infect Control 2022 51 (4) 472-474
An improved workflow for accurate and robust healthcare environmental surveillance using metagenomics.
Shen J , McFarland AG , Blaustein RA , Rose LJ , Perry-Dow KA , Moghadam AA , Hayden MK , Young VB , Hartmann EM .
Microbiome 2022 10 (1) 206 type
An Examination of SARS-CoV-2 Transmission Based on Classroom Distancing in Schools With Other Preventive Measures in Place-Missouri, January-March 2021.
Donovan CV , Worrell MC , Steinberg J , Montgomery BK , Young R , Richardson G , Dawson P , Dinh TH , Botkin N , Fitzpatrick T , Fields A , Rains CM , Fritz S , Malone S , Tong S , Mooney J , Newland JG , Barrios LC , Neatherlin JC , Salzer JS .
Public Health Rep 2022 137 (5) 333549221109003 type
Listeria monocytogenes Illness and Deaths Associated With Ongoing Contamination of a Multi-Regional Brand of Ice Cream Products, United States, 2010-2015.
Conrad AR , Tubach S , Cantu V , Webb LM , Stroika S , Moris S , Davis M , Hunt DC , Bradley KK , Kucerova Z , Strain E , Doyle M , Fields A , Neil KP , Gould LH , Jackson KA , Wise ME , Griffin PM , Jackson BR .
Clin Infect Dis 2022 76 (1) 89-95 type
Effectiveness of COVID-19 mRNA vaccines against infection during an outbreak of SARS-CoV-2 Beta (B.1.351) variant in a skilled nursing facility - Virginia, March-April 2021.
Moline HL , Keaton A , Rice W , Varghese J , Deng L , Waters A , Barringer A , Winston D , Fields V , Slifka KJ , Verani JR , Schrag SJ , Jernigan J , Tate JE , Fleming-Dutra KE .
Clin Infect Dis 2022 75 S155-S158 type
Digital Health COVID-19 Impact Assessment: Lessons Learned and Compelling Needs.
Lee P , Abernethy A , Shaywitz D , Gundlapalli AV , Weinstein J , Doraiswamy PM , Schulman K , Madhavan S .
NAM Perspect 2022 2022
A global repository of novel antimicrobial emergence events.
Mendelsohn E , Daszak P , Ross N , White AM , Whiting K , Basaraba C , Watson Madubuonwu B , Johnson E , Dualeh M , Matson Z , Dattaray S , Ezeokoli N , Kirshenbaum Lieberman M , Kotcher J , Maher S , Zambrana-Torrelio C .
F1000Res 2021 9 1320
Recommended reporting items for epidemic forecasting and prediction research: The EPIFORGE 2020 guidelines.
Pollett S , Johansson MA , Reich NG , Brett-Major D , Del Valle SY , Venkatramanan S , Lowe R , Porco T , Berry IM , Deshpande A , Kraemer MUG , Blazes DL , Pan-Ngum W , Vespigiani A , Mate SE , Silal SP , Kandula S , Sippy R , Quandelacy TM , Morgan JJ , Ball J , Morton LC , Althouse BM , Pavlin J , van Panhuis W , Riley S , Biggerstaff M , Viboud C , Brady O , Rivers C .
PLoS Med 2021 18 (10) e1003793 type
The genomic epidemiology of multi-drug resistant invasive non-typhoidal Salmonella in selected sub-Saharan African countries.
Park SE , Pham DT , Pak GD , Panzner U , Maria Cruz Espinoza L , von Kalckreuth V , Im J , Mogeni OD , Schütt-Gerowitt H , Crump JA , Breiman RF , Adu-Sarkodie Y , Owusu-Dabo E , Rakotozandrindrainy R , Bassiahi Soura A , Aseffa A , Gasmelseed N , Sooka A , Keddy KH , May J , Aaby P , Biggs HM , Hertz JT , Montgomery JM , Cosmas L , Olack B , Fields B , Sarpong N , Razafindrabe TJL , Raminosoa TM , Kabore LP , Sampo E , Teferi M , Yeshitela B , El Tayeb MA , Krumkamp R , Dekker DM , Jaeger A , Tall A , Gassama A , Niang A , Bjerregaard-Andersen M , Løfberg SV , Deerin JF , Park JK , Konings F , Carey ME , Van Puyvelde S , Ali M , Clemens J , Dougan G , Baker S , Marks F .
BMJ Glob Health 2021 6 (8) type
Features and Practicability of the Next-Generation Sensors and Monitors for Exposure Assessment to Airborne Pollutants: A Systematic Review.
Fanti G , Borghi F , Spinazzè A , Rovelli S , Campagnolo D , Keller M , Cattaneo A , Cauda E , Cavallo DM .
Sensors (Basel) 2021 21 (13)
The epidemiology and estimated etiology of pathogens detected from the upper respiratory tract of adults with severe acute respiratory infections in multiple countries, 2014-2015.
Milucky J , Pondo T , Gregory CJ , Iuliano D , Chaves SS , McCracken J , Mansour A , Zhang Y , Aleem MA , Wolff B , Whitaker B , Whistler T , Onyango C , Lopez MR , Liu N , Rahman MZ , Shang N , Winchell J , Chittaganpitch M , Fields B , Maldonado H , Xie Z , Lindstrom S , Sturm-Ramirez K , Montgomery J , Wu KH , Van Beneden CA .
PLoS One 2020 15 (10) e0240309 type
The Clinical Presentation of Culture-positive and Culture-negative, Quantitative Polymerase Chain Reaction (qPCR)-Attributable Shigellosis in the Global Enteric Multicenter Study and Derivation of a Shigella Severity Score: Implications for Pediatric Shigella Vaccine Trials.
Pavlinac PB , Platts-Mills JA , Tickell KD , Liu J , Juma J , Kabir F , Nkeze J , Okoi C , Operario DJ , Uddin MJ , Ahmed S , Alonso PL , Antonio M , Becker SM , Breiman RF , Faruque ASG , Fields B , Gratz J , Haque R , Hossain A , Hossain MJ , Jarju S , Qamar F , Iqbal NT , Kwambana B , Mandomando I , McMurry TL , Ochieng C , Ochieng JB , Ochieng M , Onyango C , Panchalingam S , Kalam A , Aziz F , Qureshi S , Ramamurthy T , Roberts JH , Saha D , Sow SO , Stroup SE , Sur D , Tamboura B , Taniuchi M , Tennant SM , Roose A , Toema D , Wu Y , Zaidi A , Nataro JP , Levine MM , Houpt ER , Kotloff KL .
Clin Infect Dis 2020 73 (3) e569-e579
Shiga Toxin-Producing E. coli Infections Associated with Romaine Lettuce - United States, 2018.
Bottichio L , Keaton A , Thomas D , Fulton T , Tiffany A , Frick A , Mattioli M , Kahler A , Murphy J , Otto M , Tesfai A , Fields A , Kline K , Fiddner J , Higa J , Barnes A , Arroyo F , Salvatierra A , Holland A , Taylor W , Nash J , Morawski BM , Correll S , Hinnenkamp R , Havens J , Patel K , Schroeder MN , Gladney L , Martin H , Whitlock L , Dowell N , Newhart C , Watkins LF , Hill V , Lance S , Harris S , Wise M , Williams I , Basler C , Gieraltowski L .
Clin Infect Dis 2019 71 (8) e323-e330 type
Evaluation of a Bead-Based Salmonella Molecular Serotyping Method for Salmonella Isolated from Food and Environmental Samples.
Moore MM , Nucci MJ , Madson SM , Wagley GS , Keys CE , Brown EW , McQuiston JR , Fields PI .
J Food Prot 2019 82 (11) 1973-1987 type
Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach.
Hendriksen RS , Lukjancenko O , Munk P , Hjelmso MH , Verani JR , Ng'eno E , Bigogo G , Kiplangat S , Oumar T , Bergmark L , Roder T , Neatherlin JC , Clayton O , Hald T , Karlsmose S , Pamp SJ , Fields B , Montgomery JM , Aarestrup FM .
PLoS One 2019 14 (10) e0222531 type
SeqSero2: rapid and improved Salmonella serotype determination using whole genome sequencing data.
Zhang S , Den-Bakker HC , Li S , Chen J , Dinsmore BA , Lane C , Lauer AC , Fields PI , Deng X .
Appl Environ Microbiol 2019 85 (23) type
Beyond Public Health Genomics: Can Big Data and Predictive Analytics Deliver Precision Public Health?
Khoury MJ , Engelgau M , Chambers DA , Mensah GA .
Public Health Genomics 2019 21 1-6 type
Chief Complaint Classification with Recurrent Neural Networks.
Lee SH , Levin D , Finley PD , Heilig CM .
J Biomed Inform 2019 93 103158
Notes from the Field: Environmental Investigation of a Multistate Salmonellosis Outbreak Linked to Live Backyard Poultry from a Mail-Order Hatchery - Michigan, 2018.
Hardy MC , Robertson SA , Sidge J , Signs K , Stobierski MG , Jones K , Soehnlen M , Stefanovsky L , Hambley A , Brandenburg JM , Martin H , Lauer AC , Fields P , Koski L , Stevenson LM , Pabilonia KL , Nichols MC , Basler CA , Ribot EM , Hise KB .
MMWR Morb Mortal Wkly Rep 2019 67 (5152) 1430-1431 type
Zoonotic Source Attribution of Salmonella enterica Serotype Typhimurium Using Genomic Surveillance Data, United States.
Zhang S , Li S , Gu W , den Bakker H , Boxrud D , Taylor A , Roe C , Driebe E , Engelthaler DM , Allard M , Brown E , McDermott P , Zhao S , Bruce BB , Trees E , Fields PI , Deng X .
Emerg Infect Dis 2019 25 (1) 82-91
The phylogeography and incidence of multi-drug resistant typhoid fever in sub-Saharan Africa.
Park SE , Pham DT , Boinett C , Wong VK , Pak GD , Panzner U , Espinoza LMC , von Kalckreuth V , Im J , Schutt-Gerowitt H , Crump JA , Breiman RF , Adu-Sarkodie Y , Owusu-Dabo E , Rakotozandrindrainy R , Soura AB , Aseffa A , Gasmelseed N , Keddy KH , May J , Sow AG , Aaby P , Biggs HM , Hertz JT , Montgomery JM , Cosmas L , Fields B , Sarpong N , Razafindrabe TJL , Raminosoa TM , Kabore LP , Sampo E , Teferi M , Yeshitela B , El Tayeb MA , Sooka A , Meyer CG , Krumkamp R , Dekker DM , Jaeger A , Poppert S , Tall A , Niang A , Bjerregaard-Andersen M , Valborg Løfberg S , Seo HJ , Jeon HJ , Deerin JF , Park J , Konings F , Ali M , Clemens JD , Hughes P , Sendagala JN , Vudriko T , Downing R , Ikumapayi UN , Mackenzie GA , Obaro S , Argimon S , Aanensen DM , Page A , Keane JA , Duchene S , Dyson Z , Holt KE , Dougan G , Marks F , Baker S .
Nat Commun 2018 9 (1) 5094 type
Comparative genomics of Salmonella enterica serovar Montevideo reveals lineage-specific gene differences that may influence ecological niche association.
Nguyen SV , Harhay DM , Bono JL , Smith TPL , Fields PI , Dinsmore BA , Santovenia M , Wang R , Bosilevac JM , Harhay GP .
Microb Genom 2018 4 (8) type
Identification and characterization of influenza A viruses in selected domestic animals in Kenya, 2010-2012.
Munyua P , Onyango C , Mwasi L , Waiboci LW , Arunga G , Fields B , Mott JA , Cardona CJ , Kitala P , Nyaga PN , Njenga MK .
PLoS One 2018 13 (2) e0192721
Multi-drug resistant non-typhoidal Salmonella associated with invasive disease in western Kenya.
Akullian A , Montgomery JM , John-Stewart G , Miller SI , Hayden HS , Radey MC , Hager KR , Verani JR , Ochieng JB , Juma J , Katieno J , Fields B , Bigogo G , Audi A , Walson J .
PLoS Negl Trop Dis 2018 12 (1) e0006156 type
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