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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: May 30, 2025. (Total: 6717 publications)
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Records 1-30 (of 60 Records)
Query Trace: Fast HE[original query]
A unified approach to health data exchange: A Report From the US DHHS
Abbasi AB , Layden J , Gordon W , Gregurick S , DeLew N , Grossman J , Bierman AS , Monarez S , Curtis LH , Viall AH , Rocca M , Rivera DR , Marston H , Mugge A , Smith SR , Bent K , Macrae J , Sheehy A , Wegrzyn RD , Valdez RB , Johnson C , Bush L , Blum J , Cohen MK , Bertagnolli MM , Califf RM , Tripathi M .
Jama 2025
SmartChart Suite: a Fast Healthcare Interoperability Resources-based framework for longitudinal syphilis surveillance using structured and unstructured data
Stevens A , Karki S , Shivers E , Pérez A , Choi M , Berro A , Riley M , Yang J , Tassev P , Jackson DA , Kim I , Duke JD .
JAMIA Open 2025 8 (1) ooae145
Orthopoxvirus genome sequencing, assembly, and analysis
Gigante CM , Weigand MR , Li Y .
Methods Mol Biol 2025 2860 39-63 type
Estimating the prevalence of injection drug use among acute hepatitis C cases from a national surveillance system: Application of random forest-based multiple imputation
Yin S , Ly KN , Barker LK , Bixler D , Thompson ND , Gupta N .
J Public Health Manag Pract 2024 30 (5) 733-743
Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications
Timme RE , Karsch-Mizrachi I , Waheed Z , Arita M , MacCannell D , Maguire F , Petit Iii R , Page AJ , Mendes CI , Nasar MI , Oluniyi P , Tyler AD , Raphenya AR , Guthrie JL , Olawoye I , Rinck G , O'Cathail C , Lees J , Cochrane G , Cummins C , Brister JR , Klimke W , Feldgarden M , Griffiths E .
Microb Genom 2023 9 (12) type
Evaluation of the Illumina iSeq whole genome sequencing system for enteric disease surveillance and outbreak detection
Trees E , Poates A , Sabol A , LaFon P , Truong J , Lindsey R .
J Microbiol Methods 2023 211 106784 type
Multinational outbreak of Listeria monocytogenes infections linked to enoki mushrooms imported from The Republic of Korea 2016-2020
Pereira E , Conrad A , Tesfai A , Palacios A , Kandar R , Kearney A , Locas A , Jamieson F , Elliot E , Otto M , Kurdilla K , Tijerina M , Son I , Pettengill JB , Chen Y , Fox T , Lane C , Aguillon R , Huffman J , Sheau Fong Low M , Wise M , Edwards L , Bidol S , Blankenship HM , Rosen HE , Leclercq A , Lecuit M , Tourdjman M , Herber H , Singleton LS , Viazis S , Bazaco MC .
J Food Prot 2023 86 (7) 100101 type
Use of Nucleic Acid Amplification Testing for Rapid Detection of Mycobacterium tuberculosis Complex Among US Tuberculosis Patients, 2011‒2017.
Kumar V , Dalton TL , Armstrong LR , Whitesell A , Li R , Starks AM .
Open Forum Infect Dis 2021 8 (11) ofab528 type
Adapterama II: universal amplicon sequencing on Illumina platforms (TaggiMatrix).
Glenn TC , Pierson TW , Bayona-Vásquez NJ , Kieran TJ , Hoffberg SL , Thomas Iv JC , Lefever DE , Finger JW , Gao B , Bian X , Louha S , Kolli RT , Bentley KE , Rushmore J , Wong K , Shaw TI , Rothrock MJ Jr , McKee AM , Guo TL , Mauricio R , Molina M , Cummings BS , Lash LH , Lu K , Gilbert GS , Hubbell SP , Faircloth BC .
PeerJ 2019 7 e7786 type
Impact of the COVID-19 Vaccination Program on case incidence, emergency department visits, and hospital admissions among children aged 5-17 Years during the Delta and Omicron Periods-United States, December 2020 to April 2022.
Topf KG , Sheppard M , Marx GE , Wiegand RE , Link-Gelles R , Binder AM , Cool AJ , Lyons BC , Park S , Fast HE , Presnetsov A , Azondekon GR , Soetebier KA , Adjemian J , Barbour KE .
PLoS One 2022 17 (12) e0276409
Using a Cloud-Based Machine Learning Classification Tree Analysis to Understand the Demographic Characteristics Associated With COVID-19 Booster Vaccination Among Adults in the United States.
Meng L , Fast HE , Saelee R , Zell E , Murthy BP , Murthy NC , Lu PJ , Shaw L , Harris L , Gibbs-Scharf L , Chorba T .
Open Forum Infect Dis 2022 9 (9) ofac446
Simplified Cas13-based assays for the fast identification of SARS-CoV-2 and its variants.
Arizti-Sanz J , Bradley A , Zhang YB , Boehm CK , Freije CA , Grunberg ME , Kosoko-Thoroddsen TF , Welch NL , Pillai PP , Mantena S , Kim G , Uwanibe JN , John OG , Eromon PE , Kocher G , Gross R , Lee JS , Hensley LE , MacInnis BL , Johnson J , Springer M , Happi CT , Sabeti PC , Myhrvold C .
Nat Biomed Eng 2022 6 (8) 932-943 type
HISTOLOGIC LESIONS IN PLACENTAS OF NORTHERN FUR SEALS (CALLORHINUS URSINUS) FROM A POPULATION WITH HIGH PLACENTAL PREVALENCE OF COXIELLA BURNETII.
Conway R , Duncan C , Foster RA , Kersh GJ , Raverty S , Gelatt T , Frank C .
J Wildl Dis 2022 58 (2) 333-340
Development and Evaluation of a TaqMan Real-Time PCR Assay for the Rapid Detection of Cross-Contamination of RD (Human) and L20B (Mouse) Cell Lines Used in Poliovirus Surveillance.
Ahmad A , Lee JR , Metz JM , Tang X , Lin SC , Bagarozzi DAJr , Petway D , Herzegh O .
J Virol Methods 2021 300 114354 type
Derivation and external validation of a risk score for predicting HIV-associated tuberculosis to support case finding and preventive therapy scale-up: A cohort study.
Auld AF , Kerkhoff AD , Hanifa Y , Wood R , Charalambous S , Liu Y , Agizew T , Mathoma A , Boyd R , Date A , Shiraishi RW , Bicego G , Mathebula-Modongo U , Alexander H , Serumola C , Rankgoane-Pono G , Pono P , Finlay A , Shepherd JC , Ellerbrock TV , Grant AD , Fielding K .
PLoS Med 2021 18 (9) e1003739
Complete and Circularized Bacterial Genome Sequence of Gordonia sp. Strain X0973
Gulvik CA , Batra D , Rowe LA , Sheth M , Nobles S , Lee JS , McQuiston JR , Lasker BA .
Microbiol Resour Announc 2021 10 (9) type
MALDI-TOF MS: an alternative approach for ribotyping Clostridioides difficile isolates in Brazil.
Gouveia CL , Abreu PTC , Hercules M , John B , Cavalcanti Pilotto DRM , de Oliveira FE .
Anaerobe 2021 69 102351
Convex hulls in hamming space enable efficient search for similarity and clustering of genomic sequences.
Campo DS , Khudyakov Y .
BMC Bioinformatics 2020 21 482
Evolution and rapid spread of a reassortant A(H3N2) virus that predominated the 2017-2018 influenza season.
Potter BI , Kondor R , Hadfield J , Huddleston J , Barnes J , Rowe T , Guo L , Xu X , Neher RA , Bedford T , Wentworth DE .
Virus Evol 2019 5 (2) vez046 type
HMG-CoA Reductase Inhibitors as Drug Leads against Naegleria fowleri .
Hahn HJ , Abagyan R , Podust LM , Roy S , Ali IKM , Debnath A .
ACS Chem Neurosci 2020 11 (19) 3089-3096
Analytical Evaluation of the Microarray-Based FluChip-8G Influenza A+B Assay.
Taylor AW , Dawson ED , Blair RH , Johnson JEJr , Slinskey AH , Smolak AW , Toth E , Liikanen K , Stoughton RS , Smith C , Talbot S , Rowlen KL .
J Virol Methods 2019 273 113686 type
Sputum smear microscopy in the Xpert ® MTB/RIF era.
Van Deun A , Tahseen S , Affolabi D , Hossain MA , Joloba ML , Angra PK , Ridderhof JC , de Jong BC , Rieder HL .
Int J Tuberc Lung Dis 2018 23 (1) 12-18
A large HCV transmission network enabled a fast-growing HIV outbreak in rural Indiana, 2015.
Ramachandran S , Thai H , Forbi JC , Galang RR , Dimitrova Z , Xia GL , Lin Y , Punkova LT , Pontones PR , Gentry J , Blosser SJ , Lovchik J , Switzer WM , Teshale E , Peters P , Ward J , Khudyakov Y .
EBioMedicine 2018 37 374-381 type
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
Tsyvina V , Campo DS , Sims S , Zelikovsky A , Khudyakov Y , Skums P .
BMC Bioinformatics 2018 19 360 type
Multi-site evaluation of the LN34 pan-lyssavirus real-time RT-PCR assay for post-mortem rabies diagnostics.
Gigante CM , Dettinger L , Powell JW , Seiders M , Condori REC , Griesser R , Okogi K , Carlos M , Pesko K , Breckenridge M , Simon EMM , Chu Myjv , Davis AD , Brunt SJ , Orciari L , Yager P , Carson WC , Hartloge C , Saliki JT , Sanchez S , Deldari M , Hsieh K , Wadhwa A , Wilkins K , Peredo VY , Rabideau P , Gruhn N , Cadet R , Isloor S , Nath SS , Joseph T , Gao J , Wallace R , Reynolds M , Olson VA , Li Y .
PLoS One 2018 13 (5) e0197074 type
Molecular detection of Cyclospora cayetanensis in human stool specimens using UNEX-based DNA extraction and real-time PCR.
Qvarnstrom Y , Benedict T , Marcet PL , Wiegand RE , Herwaldt BL , da Silva AJ .
Parasitology 2017 145 (7) 1-6 type
Human Genome Sequencing at the Population Scale: A Primer on High-Throughput DNA Sequencing and Analysis.
Goldfeder RL , Wall DP , Khoury MJ , Ioannidis JPA , Ashley EA .
Am J Epidemiol 2017 186 (8) 1000-1009 type
Rapid colorimetric detection of Zika virus from serum and urine specimens by reverse transcription loop-mediated isothermal amplification (RT-LAMP).
Calvert AE , Biggerstaff BJ , Tanner NA , Lauterbach M , Lanciotti RS .
PLoS One 2017 12 (9) e0185340
Impact of Larger Sputum Volume on Xpert(®) MTB/RIF Assay Detection of Mycobacterium tuberculosis in Smear-Negative Individuals with Suspected Tuberculosis.
Badal-Faesen S , Firnhaber C , Kendall MA , Wu X , Grinsztejn B , Escada Rods , Fernandez M , Hogg E , Sanne I , Johnson P , Alland D , Mazurek GH , Benator DA , Luetkemeyer AF .
J Clin Med 2017 6 (8)
Efficient detection of viral transmissions with Next-Generation Sequencing data.
Rytsareva I , Campo DS , Zheng Y , Sims S , Thankachan SV , Tetik C , Chirag J , Chockalingam SP , Sue A , Aluru S , Khudyakov Y .
BMC Genomics 2017 18 372
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