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CDC-Authored Genomics and Precision Health Publications Database|Home|PHGKB

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Sep 18, 2023. (Total: 4409 publications since 2011)
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Records 1-30 (of 45 Records)
Query Trace: Debra A[original query]
Selective Whole-Genome Amplification as a Tool to Enrich Specimens with Low Treponema pallidum Genomic DNA Copies for Whole-Genome Sequencing.
Thurlow CM , Joseph SJ , Ganova-Raeva L , Katz SS , Pereira L , Chen C , Debra A , Vilfort K , Workowski K , Cohen SE , Reno H , Sun Y , Burroughs M , Sheth M , Chi KH , Danavall D , Philip SS , Cao W , Kersh EN , Pillay A .
mSphere 2022 7 (3) e0000922
MiR-378b Modulates Chlamydia-Induced Upper Genital Tract Pathology.
Lundy SR , Abney K , Ellerson D , Igietseme JU , Carroll D , Eko FO , Omosun YO .
Pathogens 2021 10 (5)
Introduction, Transmission Dynamics, and Fate of Early SARS-CoV-2 Lineages in Santa Clara County, California.
Villarino E , Deng X , Kemper CA , Jorden MA , Bonin B , Rudman SL , Han GS , Yu G , Wang C , Federman S , Bushnell B , Wadford DA , Lin W , Tao Y , Paden CR , Bhatnagar J , MacCannell T , Tong S , Batson J , Chiu CY .
J Infect Dis 2021 224 (2) 207-217 type
Timely Intervention and Control of a Novel Coronavirus (COVID-19) Outbreak at a Large Skilled Nursing Facility - San Francisco, California, 2020.
Karmarkar E , Blanco I , Amornkul P , DuBois A , Deng X , Moonan PK , Rubenstein BL , Miller DA , Kennedy I , Yu J , Dauterman J , Ongpin M , Hathaway W , Hoo L , Trammell S , Ememu E , Yu G , Khwaja Z , Lu W , Talai N , Jain S , Louie J , Philip S , Federman S , Masinde G , Wadford DA , Bobba N , Stoltey J , Smith A , Epson E , Chiu C , Bennett A , Vasquez AM , Williams T .
Infect Control Hosp Epidemiol 2020 42 (10) 1-20 type
Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California.
Deng X , Gu W , Federman S , duPlessis L , Pybus OG , Faria N , Wang C , Yu G , Bushnell B , Pan CY , Guevara H , Sotomayor-Gonzalez A , Zorn K , Gopez A , Servellita V , Hsu E , Miller S , Bedford T , Greninger AL , Roychoudhury P , Starita LM , Famulare M , Chu HY , Shendure J , Jerome KR , Anderson C , Gangavarapu K , Zeller M , Spencer E , Andersen KG , MacCannell D , Paden CR , Li Y , Zhang J , Tong S , Armstrong G , Morrow S , Willis M , Matyas BT , Mase S , Kasirye O , Park M , Masinde G , Chan C , Yu AT , Chai SJ , Villarino E , Bonin B , Wadford DA , Chiu CY .
Science 2020 369 (6503) 582-587 type
Draft Genome Sequences of Two Extensively Drug-Resistant Strains of Acinetobacter baumannii Isolated from Clinical Samples in Pakistan.
Lomonaco S , Crawford MA , Lascols C , Fisher DJ , Anderson K , Hodge DR , Pillai SP , Morse SA , Khan E , Hughes MA , Allard MW , Sharma SK .
Microbiol Resour Announc 2020 9 (20)
Successful isolation of Treponema pallidum strains from patients' cryopreserved ulcer exudate using the rabbit model.
Pereira LE , Katz SS , Sun Y , Mills P , Taylor W , Atkins P , Thurlow CM , Chi KH , Danavall D , Cook N , Ahmed T , Debra A , Philip S , Cohen S , Workowski KA , Kersh E , Fakile Y , Chen CY , Pillay A .
PLoS One 2020 15 (1) e0227769
Laboratory Analysis of an Outbreak of Candida auris in New York from 2016 to 2018-Impact and Lessons Learned.
Zhu Y , O'Brien B , Leach L , Clark A , Bates M , Adams E , Ostrowsky B , Quinn M , Dufort E , Southwick K , Erazo R , Haley VB , Bucher C , Chaturvedi V , Limberger RJ , Blog D , Lutterloh E , Chaturvedi S .
J Clin Microbiol 2019 58 (4)
New research directions on disparities in obesity and type 2 diabetes.
Thornton PL , Kumanyika SK , Gregg EW , Araneta MR , Baskin ML , Chin MH , Crespo CJ , deGroot M , Garcia DO , Haire-Joshu D , Heisler M , Hill-Briggs F , Ladapo JA , Lindberg NM , Manson SM , Marrero DG , Peek ME , Shields AE , Tate DF , Mangione CM .
Ann N Y Acad Sci 2019 1461 (1) 5-24
Nearly Complete Genome Sequence of an Echovirus 30 Strain from a Cluster of Aseptic Meningitis Cases in California, September 2017.
Pan CY , Huynh T , Padilla T , Chen A , Ng TFF , Marine RL , Castro CJ , Nix WA , Wadford DA .
Microbiol Resour Announc 2019 8 (44)
Pan-viral serology implicates enteroviruses in acute flaccid myelitis.
Schubert RD , Hawes IA , Ramachandran PS , Ramesh A , Crawford ED , Pak JE , Wu W , Cheung CK , O'Donovan BD , Tato CM , Lyden A , Tan M , Sit R , Sowa GA , Sample HA , Zorn KC , Banerji D , Khan LM , Bove R , Hauser SL , Gelfand AA , Johnson-Kerner BL , Nash K , Krishnamoorthy KS , Chitnis T , Ding JZ , McMillan HJ , Chiu CY , Briggs B , Glaser CA , Yen C , Chu V , Wadford DA , Dominguez SR , Ng TFF , Marine RL , Lopez AS , Nix WA , Soldatos A , Gorman MP , Benson L , Messacar K , Konopka-Anstadt JL , Oberste MS , DeRisi JL , Wilson MR .
Nat Med 2019 25 (11) 1748-1752
Prevalence of HIV-1 drug resistance amongst newly diagnosed HIV-infected infants age 4-8 weeks, enrolled in three nationally representative PMTCT effectiveness surveys, South Africa: 2010, 2011-12 and 2012-13.
Hunt GM , Ledwaba J , Salimo A , Kalimashe M , Dinh TH , Jackson D , Sherman G , Puren A , Ngandu NK , Lombard C , Morris L , Goga A .
BMC Infect Dis 2019 19 787
Draft Genome Sequences of Antimicrobial-Resistant Shigella Clinical Isolates from Pakistan.
Lomonaco S , Lascols C , Crawford MA , Anderson K , Hodge DR , Fisher DJ , Pillai SP , Morse SA , Khan E , Hughes MA , Allard MW , Sharma SK .
Microbiol Resour Announc 2019 8 (30)
A unique insight into the MiRNA profile during genital chlamydial infection.
Benyeogor I , Simoneaux T , Wu Y , Lundy S , George Z , Ryans K , McKeithen D , Pais R , Ellerson D , Lorenz WW , Omosun T , Thompson W , Eko FO , Black CM , Blas-Machado U , Igietseme JU , He Q , Omosun Y .
BMC Genomics 2019 20 (1) 143
Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase.
Ezewudo M , Borens A , Chiner-Oms A , Miotto P , Chindelevitch L , Starks AM , Hanna D , Liwski R , Zignol M , Gilpin C , Niemann S , Kohl TA , Warren RM , Crook D , Gagneux S , Hoffner S , Rodrigues C , Comas I , Engelthaler DM , Alland D , Rigouts L , Lange C , Dheda K , Hasan R , McNerney R , Cirillo DM , Schito M , Rodwell TC , Posey J .
Sci Rep 2018 8 (1) 15382
Genome Sequences of Rhinovirus Genotype C56 Detected in Three Patients with Acute Respiratory Illness, California, 2016 to 2017.
Pan CY , Yagi S , Padilla T , FeiFanNg T , Marine RL , Nix WA , Wadford DA .
Microbiol Resour Announc 2018 7 (7)
Molecular Epidemiology, Ecology, and Evolution of Group A Streptococci.
Bessen DE , Smeesters PR , Beall BW .
Microbiol Spectr 2018 6 (5)
Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates.
Lomonaco S , Crawford MA , Lascols C , Timme RE , Anderson K , Hodge DR , Fisher DJ , Pillai SP , Morse SA , Khan E , Hughes MA , Allard MW , Sharma SK .
PLoS One 2018 13 (6) e0198526
Cross-Sectional HIV Incidence Surveillance: A Benchmarking of Approaches for Estimating the 'Mean Duration of Recent Infection'.
Kassanjee R , DeAngelis D , Farah M , Hanson D , Labuschagne JPL , Laeyendecker O , LeVu S , Tom B , Wang R , Welte A .
Stat Commun Infect Dis 2017 9 (1)
Whole-Genome Sequence of Human Rhinovirus C47, Isolated from an Adult Respiratory Illness Outbreak in Butte County, California, 2017.
Pan CY , Padilla T , Yagi S , Lewis LS , Ng TFF , Marine RL , Nix WA , Wadford DA .
Genome Announc 2018 6 (5)
Proposed outcomes measures for state public health genomic programs.
Doyle DL , Clyne M , Rodriguez JL , Cragun DL , Senier L , Hurst G , Chan K , Chambers DA .
Genet Med 2018 20 (9) 995-1003
A standardised method for interpreting the association between mutations and phenotypic drug resistance in Mycobacterium tuberculosis.
Miotto Paolo, Tessema Belay, Tagliani Elisa, Chindelevitch Leonid, Starks Angela M, Emerson Claudia, Hanna Debra, Kim Peter S, Liwski Richard, Zignol Matteo, Gilpin Christopher, Niemann Stefan, Denkinger Claudia M, Fleming Joy, Warren Robin M, Crook Derrick, Posey James, Gagneux Sebastien, Hoffner Sven, Rodrigues Camilla, Comas Iñaki, Engelthaler David M, Murray Megan, Alland David, Rigouts Leen, Lange Christoph, Dheda Keertan, Hasan Rumina, Ranganathan Uma Devi K, McNerney Ruth, Ezewudo Matthew, Cirillo Daniela M, Schito Marco, Köser Claudio U, Rodwell Timothy C.The European respiratory journal 2017 Dec (6) .
The European respiratory journal 2017 Dec (6)
Detailed Transmission Network Analysis of a Large Opiate-Driven Outbreak of HIV Infection in the United States.
Campbell Ellsworth M, Jia Hongwei, Shankar Anupama, Hanson Debra, Luo Wei, Masciotra Silvina, Owen S Michele, Oster Alexandra M, Galang Romeo R, Spiller Michael W, Blosser Sara J, Chapman Erika, Roseberry Jeremy C, Gentry Jessica, Pontones Pamela, Duwve Joan, Peyrani Paula, Kagan Ron M, Whitcomb Jeannette M, Peters Philip J, Heneine Walid, Brooks John T, Switzer William M. The Journal of infectious diseases 2017 Oct .
The Journal of infectious diseases 2017 Oct
Impact of Larger Sputum Volume on Xpert(®) MTB/RIF Assay Detection of Mycobacterium tuberculosis in Smear-Negative Individuals with Suspected Tuberculosis.
Badal-Faesen Sharlaa, Firnhaber Cynthia, Kendall Michelle A, Wu Xingye, Grinsztejn Beatriz, Escada Rodrigo Otavio da Silva, Fernandez Michel, Hogg Evelyn, Sanne Ian, Johnson Pamela, Alland David, Mazurek Gerald H, Benator Debra A, Luetkemeyer Anne F, , . Journal of clinical medicine 2017 Aug 6(8) .
Journal of clinical medicine 2017 Aug 6(8)
Genome Sequences of Multidrug-Resistant, Colistin-Susceptible and -Resistant Klebsiella pneumoniae Clinical Isolates from Pakistan.
Crawford Matthew A, Timme Ruth, Lomonaco Sara, Lascols Christine, Fisher Debra J, Sharma Shashi K, Strain Errol, Allard Marc W, Brown Eric W, McFarland Melinda A, Croley Tim, Hammack Thomas S, Weigel Linda M, Anderson Kevin, Hodge David R, Pillai Segaran P, Morse Stephen A, Khan Erum, Hughes Molly A. Genome announcements 2016 Dec 4(6) .
Genome announcements 2016 Dec 4(6)
CDC Grand Rounds: Family History and Genomics as Tools for Cancer Prevention and Control.
Rodriguez Juan L, Thomas Cheryll C, Massetti Greta M, Duquette Debra, Avner Lindsay, Iskander John, Khoury Muin J, Richardson Lisa C. MMWR. Morbidity and mortality weekly report 2016 Nov 65(46) 1291-1294 .
MMWR. Morbidity and mortality weekly report 2016 Nov 65(46) 1291-1294
Time until emergence of HIV test reactivity following infection with HIV-1: Implications for interpreting test results and retesting after exposure.
Delaney Kevin P, Hanson Debra L, Masciotra Silvina, Ethridge Steven F, Wesolowski Laura, Owen S Michele.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Oct .
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 Oct
Female chromosome X mosaicism is age-related and preferentially affects the inactivated X chromosome.
Machiela Mitchell J, Zhou Weiyin, Karlins Eric, Sampson Joshua N, Freedman Neal D, Yang Qi, Hicks Belynda, Dagnall Casey, Hautman Christopher, Jacobs Kevin B, Abnet Christian C, Aldrich Melinda C, Amos Christopher, Amundadottir Laufey T, Arslan Alan A, Beane-Freeman Laura E, Berndt Sonja I, Black Amanda, Blot William J, Bock Cathryn H, Bracci Paige M, Brinton Louise A, Bueno-de-Mesquita H Bas, Burdett Laurie, Buring Julie E, Butler Mary A, Canzian Federico, Carreón Tania, Chaffee Kari G, Chang I-Shou, Chatterjee Nilanjan, Chen Chu, Chen Constance, Chen Kexin, Chung Charles C, Cook Linda S, Crous Bou Marta, Cullen Michael, Davis Faith G, De Vivo Immaculata, Ding Ti, Doherty Jennifer, Duell Eric J, Epstein Caroline G, Fan Jin-Hu, Figueroa Jonine D, Fraumeni Joseph F, Friedenreich Christine M, Fuchs Charles S, Gallinger Steven, Gao Yu-Tang, Gapstur Susan M, Garcia-Closas Montserrat, Gaudet Mia M, Gaziano J Michael, Giles Graham G, Gillanders Elizabeth M, Giovannucci Edward L, Goldin Lynn, Goldstein Alisa M, Haiman Christopher A, Hallmans Goran, Hankinson Susan E, Harris Curtis C, Henriksson Roger, Holly Elizabeth A, Hong Yun-Chul, Hoover Robert N, Hsiung Chao A, Hu Nan, Hu Wei, Hunter David J, Hutchinson Amy, Jenab Mazda, Johansen Christoffer, Khaw Kay-Tee, Kim Hee Nam, Kim Yeul Hong, Kim Young Tae, Klein Alison P, Klein Robert, Koh Woon-Puay, Kolonel Laurence N, Kooperberg Charles, Kraft Peter, Krogh Vittorio, Kurtz Robert C, LaCroix Andrea, Lan Qing, Landi Maria Teresa, Marchand Loic Le, Li Donghui, Liang Xiaolin, Liao Linda M, Lin Dongxin, Liu Jianjun, Lissowska Jolanta, Lu Lingeng, Magliocco Anthony M, Malats Nuria, Matsuo Keitaro, McNeill Lorna H, McWilliams Robert R, Melin Beatrice S, Mirabello Lisa, Moore Lee, Olson Sara H, Orlow Irene, Park Jae Yong, Patiño-Garcia Ana, Peplonska Beata, Peters Ulrike, Petersen Gloria M, Pooler Loreall, Prescott Jennifer, Prokunina-Olsson Ludmila, Purdue Mark P, Qiao You-Lin, Rajaraman Preetha, Real Francisco X, Riboli Elio, Risch Harvey A, Rodriguez-Santiago Benjamin, Ruder Avima M, Savage Sharon A, Schumacher Fredrick, Schwartz Ann G, Schwartz Kendra L, Seow Adeline, Wendy Setiawan Veronica, Severi Gianluca, Shen Hongbing, Sheng Xin, Shin Min-Ho, Shu Xiao-Ou, Silverman Debra T, Spitz Margaret R, Stevens Victoria L, Stolzenberg-Solomon Rachael, Stram Daniel, Tang Ze-Zhong, Taylor Philip R, Teras Lauren R, Tobias Geoffrey S, Van Den Berg David, Visvanathan Kala, Wacholder Sholom, Wang Jiu-Cun, Wang Zhaoming, Wentzensen Nicolas, Wheeler William, White Emily, Wiencke John K, Wolpin Brian M, Wong Maria Pik, Wu Chen, Wu Tangchun, Wu Xifeng, Wu Yi-Long, Wunder Jay S, Xia Lucy, Yang Hannah P, Yang Pan-Chyr, Yu Kai, Zanetti Krista A, Zeleniuch-Jacquotte Anne, Zheng Wei, Zhou Baosen, Ziegler Regina G, Perez-Jurado Luis A, Caporaso Neil E, Rothman Nathaniel, Tucker Margaret, Dean Michael C, Yeager Meredith, Chanock Stephen J. Nature communications 2016 711843 .
Nature communications 2016 711843
Role of Epithelial-Mesenchyme Transition in Chlamydia Pathogenesis.
Igietseme Joseph U, Omosun Yusuf, Stuchlik Olga, Reed Matthew S, Partin James, He Qing, Joseph Kahaliah, Ellerson Debra, Bollweg Brigid, George Zenas, Eko Francis O, Bandea Claudiu, Liu Hsi, Yang Genyan, Shieh Wun-Ju, Pohl Jan, Karem Kevin, Black Carolyn M. PloS one 2015 10(12) e0145198 .
PloS one 2015 10(12) e0145198
Collaborative Effort for a Centralized Worldwide Tuberculosis Relational Sequencing Data Platform.
Starks Angela M, Avilés Enrique, Cirillo Daniela M, Denkinger Claudia M, Dolinger David L, Emerson Claudia, Gallarda Jim, Hanna Debra, Kim Peter S, Liwski Richard, Miotto Paolo, Schito Marco, Zignol Matteo. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2015 Oct 61(suppl 3) S141-S146 .
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2015 Oct S141-6
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