CDC-Authored Genomics and Precision Health Publications Database
Last data update: Oct 07, 2024. (Total: 6342 publications)
| Query Trace: Daniel J[original query] |
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| Clinical and laboratory findings of the first imported case of Middle East respiratory syndrome coronavirus to the United States.
Kapoor M , Pringle K , Kumar A , Dearth S , Liu L , Lovchik J , Perez O , Pontones P , Richards S , Yeadon-Fagbohun J , Breakwell L , Chea N , Cohen NJ , Schneider E , Erdman D , Haynes L , Pallansch M , Tao Y , Tong S , Gerber S , Swerdlow D , Feikin DR . Clin Infect Dis 2014 59 (11) 1511-8 |
| Network analysis of the chronic Hepatitis C virome defines HVR1 evolutionary phenotypes in the context of humoral immune responses.
Palmer BA , Schmidt-Martin D , Dimitrova Z , Skums P , Crosbie O , Kenny-Walsh E , Fanning LJ . J Virol 2015 90 (7) 3318-29 |
| Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases.
Arias A , Watson SJ , Asogun D , Tobin EA , Lu J , Phan MVT , Jah U , Wadoum REG , Meredith L , Thorne L , Caddy S , Tarawalie A , Langat P , Dudas G , Faria NR , Dellicour S , Kamara A , Kargbo B , Kamara BO , Gevao S , Cooper D , Newport M , Horby P , Dunning J , Sahr F , Brooks T , Simpson AJH , Groppelli E , Liu G , Mulakken N , Rhodes K , Akpablie J , Yoti Z , Lamunu M , Vitto E , Otim P , Owilli C , Boateng I , Okoror L , Omomoh E , Oyakhilome J , Omiunu R , Yemisis I , Adomeh D , Ehikhiametalor S , Akhilomen P , Aire C , Kurth A , Cook N , Baumann J , Gabriel M , Wölfel R , Di Caro A , Carroll MW , Günther S , Redd J , Naidoo D , Pybus OG , Rambaut A , Kellam P , Goodfellow I , Cotten M . Virus Evol 2016 2 (1) vew016 |
| Hemi-nested PCR and RFLP methodologies for identifying blood meals of the Chagas disease vector, Triatoma infestans.
Roellig DM , Gomez-Puerta LA , Mead DG , Pinto J , Ancca-Juarez J , Calderon M , Bern C , Gilman RH , Cama VA . PLoS One 2013 8 (9) e74713 |
| Mosquito microevolution drives Plasmodium falciparum dynamics.
Gildenhard M , Rono EK , Diarra A , Boissière A , Bascunan P , Carrillo-Bustamante P , Camara D , Krüger H , Mariko M , Mariko R , Mireji P , Nsango SE , Pompon J , Reis Y , Rono MK , Seda PB , Thailayil J , Traorè A , Yapto CV , Awono-Ambene P , Dabiré RK , Diabaté A , Masiga D , Catteruccia F , Morlais I , Diallo M , Sangare D , Levashina EA . Nat Microbiol 2019 4 (6) 941-947 
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| Ebola Virus Disease Outbreak - Democratic Republic of the Congo, August 2018-November 2019.
Aruna A , Mbala P , Minikulu L , Mukadi D , Bulemfu D , Edidi F , Bulabula J , Tshapenda G , Nsio J , Kitenge R , Mbuyi G , Mwanzembe C , Kombe J , Lubula L , Shako JC , Mossoko M , Mulangu F , Mutombo A , Sana E , Tutu Y , Kabange L , Makengo J , Tshibinkufua F , Ahuka-Mundeke S , Muyembe JJ , Ebola Response CDC , Alarcon Walter , Bonwitt Jesse , Bugli Dante , Bustamante Nirma D , Choi Mary , Dahl Benjamin A , DeCock Kevin , Dismer Amber , Doshi Reena , Dubray Christine , Fitter David , Ghiselli Margherita , Hall Noemi , Hamida Amen Ben , McCollum Andrea M , Neatherlin John , Raghunathan Pratima L , Ravat Fatima , Reynolds Mary G , Rico Adriana , Smith Nailah , Soke Gnakub Norbert , Trudeau Aimee T , Victory Kerton R , Worrell Mary Claire . MMWR Morb Mortal Wkly Rep 2019 68 (50) 1162-1165
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| Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing.
Allix-Béguec C , Arandjelovic I , Bi L , Beckert P , Bonnet M , Bradley P , Cabibbe AM , Cancino-Muñoz I , Caulfield MJ , Chaiprasert A , Cirillo DM , Clifton DA , Comas I , Crook DW , De Filippo MR , de Neeling H , Diel R , Drobniewski FA , Faksri K , Farhat MR , Fleming J , Fowler P , Fowler TA , Gao Q , Gardy J , Gascoyne-Binzi D , Gibertoni-Cruz AL , Gil-Brusola A , Golubchik T , Gonzalo X , Grandjean L , He G , Guthrie JL , Hoosdally S , Hunt M , Iqbal Z , Ismail N , Johnston J , Khanzada FM , Khor CC , Kohl TA , Kong C , Lipworth S , Liu Q , Maphalala G , Martinez E , Mathys V , Merker M , Miotto P , Mistry N , Moore DAJ , Murray M , Niemann S , Omar SV , Ong RT , Peto TEA , Posey JE , Prammananan T , Pym A , Rodrigues C , Rodrigues M , Rodwell T , Rossolini GM , Sánchez Padilla E , Schito M , Shen X , Shendure J , Sintchenko V , Sloutsky A , Smith EG , Snyder M , Soetaert K , Starks AM , Supply P , Suriyapol P , Tahseen S , Tang P , Teo YY , Thuong TNT , Thwaites G , Tortoli E , van Soolingen D , Walker AS , Walker TM , Wilcox M , Wilson DJ , Wyllie D , Yang Y , Zhang H , Zhao Y , Zhu B . N Engl J Med 2018 379 (15) 1403-1415 |
| New Lineage of Lassa Virus, Togo, 2016.
Whitmer SLM , Strecker T , Cadar D , Dienes HP , Faber K , Patel K , Brown SM , Davis WG , Klena JD , Rollin PE , Schmidt-Chanasit J , Fichet-Calvet E , Noack B , Emmerich P , Rieger T , Wolff S , Fehling SK , Eickmann M , Mengel JP , Schultze T , Hain T , Ampofo W , Bonney K , Aryeequaye JND , Ribner B , Varkey JB , Mehta AK , Lyon GM 3rd , Kann G , De Leuw P , Schuettfort G , Stephan C , Wieland U , Fries JWU , Kochanek M , Kraft CS , Wolf T , Nichol ST , Becker S , Ströher U , Günther S . Emerg Infect Dis 2018 24 (3) 599-602
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| Adapterama II: universal amplicon sequencing on Illumina platforms (TaggiMatrix).
Glenn TC , Pierson TW , Bayona-Vásquez NJ , Kieran TJ , Hoffberg SL , Thomas Iv JC , Lefever DE , Finger JW , Gao B , Bian X , Louha S , Kolli RT , Bentley KE , Rushmore J , Wong K , Shaw TI , Rothrock MJ Jr , McKee AM , Guo TL , Mauricio R , Molina M , Cummings BS , Lash LH , Lu K , Gilbert GS , Hubbell SP , Faircloth BC . PeerJ 2019 7 e7786
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| Divergent Rabies Virus Variant of Probable Bat Origin in 2 Gray Foxes, New Mexico, USA.
Condori Rene E, Aragon Adam, Breckenridge Mike, Pesko Kendra, Mower Kerry, Ettestad Paul, Melman Sandra, Velasco-Villa Andres, Orciari Lillian A, Yager Pamela, Streicker Daniel G, Gigante Crystal M, Morgan Clint, Wallace Ryan, Li Yu. Emerging infectious diseases 2022 28(6) 1137-1145 . Emerging infectious diseases 2022 28(6) 1137-1145
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| Arsenic in private well water and birth outcomes in the United States.
Bulka CM , ScannellBryan M , Lombard MA , Bartell SM , Jones DK , Bradley PM , Vieira VM , Silverman DT , Focazio M , Toccalino PL , Daniel J , Backer LC , Ayotte JD , Gribble MO , Argos M . Environ Int 2022 163 107176 |
| Corrigendum to: Toxoplasmosis Outbreak Associated With Toxoplasma gondii-Contaminated Venison-High Attack Rate, Unusual Clinical Presentation, and Atypical Genotype.
Schumacher Amy C, Elbadawi Lina I, DeSalvo Traci, Straily Anne, Ajzenberg Daniel, Letzer David, Moldenhauer Ellen, Handly Tammy L, Hill Dolores, Dardé Marie-Laure, Pomares Christelle, Passebosc-Faure Karine, Bisgard Kristine, Gomez Carlos A, Press Cindy, Smiley Stephanie, Montoya José G, Kazmierczak James J. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2022 . Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2022 |
| Implementation of the Ebola Virus Persistence in Ocular Tissues and Fluids (EVICT) study: Lessons learned for vision health systems strengthening in Sierra Leone.
Shantha JG , Crozier I , Kraft CS , Grant DG , Goba A , Hayek BR , Hartley C , Barnes KG , Uyeki TM , Schieffelin J , Garry RF , Bausch DG , Farmer PE , Mattia JG , Vandy MJ , Yeh S . PLoS One 2021 16 (7) e0252905
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| Etiology of acute meningitis and encephalitis from hospital-based surveillance in South Kazakhstan oblast, February 2017-January 2018.
Bumburidi Y , Utepbergenova G , Yerezhepov B , Berdiyarova N , Kulzhanova K , Head J , Moffett D , Singer D , Angra P , Whistler T , Sejvar J . PLoS One 2021 16 (5) e0251494
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| CATMoS: Collaborative Acute Toxicity Modeling Suite.
Mansouri K , Karmaus AL , Fitzpatrick J , Patlewicz G , Pradeep P , Alberga D , Alepee N , Allen TEH , Allen D , Alves VM , Andrade CH , Auernhammer TR , Ballabio D , Bell S , Benfenati E , Bhattacharya S , Bastos JV , Boyd S , Brown JB , Capuzzi SJ , Chushak Y , Ciallella H , Clark AM , Consonni V , Daga PR , Ekins S , Farag S , Fedorov M , Fourches D , Gadaleta D , Gao F , Gearhart JM , Goh G , Goodman JM , Grisoni F , Grulke CM , Hartung T , Hirn M , Karpov P , Korotcov A , Lavado GJ , Lawless M , Li X , Luechtefeld T , Lunghini F , Mangiatordi GF , Marcou G , Marsh D , Martin T , Mauri A , Muratov EN , Myatt GJ , Nguyen DT , Nicolotti O , Note R , Pande P , Parks AK , Peryea T , Polash AH , Rallo R , Roncaglioni A , Rowlands C , Ruiz P , Russo DP , Sayed A , Sayre R , Sheils T , Siegel C , Silva AC , Simeonov A , Sosnin S , Southall N , Strickland J , Tang Y , Teppen B , Tetko IV , Thomas D , Tkachenko V , Todeschini R , Toma C , Tripodi I , Trisciuzzi D , Tropsha A , Varnek A , Vukovic K , Wang Z , Wang L , Waters KM , Wedlake AJ , Wijeyesakere SJ , Wilson D , Xiao Z , Yang H , Zahoranszky-Kohalmi G , Zakharov AV , Zhang FF , Zhang Z , Zhao T , Zhu H , Zorn KM , Casey W , Kleinstreuer NC . Environ Health Perspect 2021 129 (4) 47013 |
| Prevalent, protective, and convergent IgG recognition of SARS-CoV-2 non-RBD spike epitopes.
Voss WN , Hou YJ , Johnson NV , Delidakis G , Kim JE , Javanmardi K , Horton AP , Bartzoka F , Paresi CJ , Tanno Y , Chou CW , Abbasi SA , Pickens W , George K , Boutz DR , Towers DM , McDaniel JR , Billick D , Goike J , Rowe L , Batra D , Pohl J , Lee J , Gangappa S , Sambhara S , Gadush M , Wang N , Person MD , Iverson BL , Gollihar JD , Dye J , Herbert A , Finkelstein IJ , Baric RS , McLellan JS , Georgiou G , Lavinder JJ , Ippolito GC . Science 2021 372 (6546) 1108-1112
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| Microbial community structure and composition is associated with host species and sex in Sigmodon cotton rats.
Strickland BA , Patel MC , Shilts MH , Boone HH , Kamali A , Zhang W , Stylos D , Boukhvalova MS , Rosas-Salazar C , Yooseph S , Rajagopala SV , Blanco JCG , Das SR . Anim Microbiome 2021 3 (1) 29 |
| A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch.
Sánchez-Busó L , Yeats CA , Taylor B , Goater RJ , Underwood A , Abudahab K , Argimón S , Ma KC , Mortimer TD , Golparian D , Cole MJ , Grad YH , Martin I , Raphael BH , Shafer WM , Town K , Wi T , Harris SR , Unemo M , Aanensen DM . Genome Med 2021 13 (1) 61
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| Association of Plasmodium falciparum kelch13 R561H genotypes with delayed parasite clearance in Rwanda: an open-label, single-arm, multicentre, therapeutic efficacy study.
Uwimana A , Umulisa N , Venkatesan M , Svigel SS , Zhou Z , Munyaneza T , Habimana RM , Rucogoza A , Moriarty LF , Sandford R , Piercefield E , Goldman I , Ezema B , Talundzic E , Pacheco MA , Escalante AA , Ngamije D , Mangala JN , Kabera M , Munguti K , Murindahabi M , Brieger W , Musanabaganwa C , Mutesa L , Udhayakumar V , Mbituyumuremyi A , Halsey ES , Lucchi NW . Lancet Infect Dis 2021 21 (8) 1120-1128
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| Intensity and mechanisms of deltamethrin and permethrin resistance in Anopheles gambiae s.l. populations in southern Benin.
Sagbohan HW , Kpanou CD , Osse R , Dagnon F , Padonou GG , Sominahouin AA , Salako AS , Sidick A , Sewade W , Akinro B , Ahmed S , Impoinvil D , Agbangla C , Akogbeto M . Parasit Vectors 2021 14 (1) 202 |
| Chimeric Zika viruses containing structural protein genes of insect-specific flaviviruses cannot replicate in vertebrate cells due to entry and post-translational restrictions.
Tangudu CS , Charles J , Nunez-Avellaneda D , Hargett AM , Brault AC , Blitvich BJ . Virology 2021 559 30-39
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| Rotavirus Genotype Trends and Gastrointestinal Pathogen Detection in the United States, 2014-16: Results from the New Vaccine Surveillance Network.
Esona MD , Ward ML , Wikswo ME , Rustempasic SM , Gautam R , Perkins C , Selvarangan R , Harrison CJ , Boom JA , Englund JA , Klein EJ , Staat MA , McNeal MM , Halasa N , Chappell J , Weinberg GA , Payne DC , Parashar UD , Bowen MD . J Infect Dis 2021 224 (9) 1539-1549
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| Leveraging risk communication science across US federal agencies.
Klein WMP , Boutté AK , Brake H , Beal M , Lyon-Daniel K , Eisenhauer E , Grasso M , Hubbell B , Jenni KE , Lauer CJ , Lupia AW , Prue CE , Rausch P , Shapiro CD , Smith MD , Riley WT . Nat Hum Behav 2021 5 (4) 411-413
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| Genomic characterization of 99 viruses from the bunyavirus families Nairoviridae, Peribunyaviridae, and Phenuiviridae, including 35 previously unsequenced viruses.
Kapuscinski ML , Bergren NA , Russell BJ , Lee JS , Borland EM , Hartman DA , King DC , Hughes HR , Burkhalter KL , Kading RC , Stenglein MD . PLoS Pathog 2021 17 (3) e1009315
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| Pediatric Respiratory and Enteric Virus Acquisition and Immunogenesis in US Mothers and Children Aged 0-2: PREVAIL Cohort Study.
Morrow AL , Staat MA , DeFranco EA , McNeal MM , Cline AR , Conrey SC , Schlaudecker EP , Piasecki AM , Burke RM , Niu L , Hall AJ , Bowen MD , Gerber SI , Langley GE , Thornburg NJ , Campbell AP , Vinjé J , Parashar UD , Payne DC . JMIR Res Protoc 2021 10 (2) e22222 |
| Complete Genome Sequence of a Serotype 7 Listeria monocytogenes Strain, FSL R9-0915.
Peters TL , Hudson LK , Bryan DW , Song Y , den Bakker HC , Kucerova Z , Denes TG . Microbiol Resour Announc 2021 10 (1)
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| Development of a Machine Learning Model Using Multiple, Heterogeneous Data Sources to Estimate Weekly US Suicide Fatalities.
Choi D , Sumner SA , Holland KM , Draper J , Murphy S , Bowen DA , Zwald M , Wang J , Law R , Taylor J , Konjeti C , De Choudhury M . JAMA Netw Open 2020 3 (12) e2030932 |
| Metagenomic sequencing generates the whole genomes of porcine rotavirus A, C, and H from the United States.
Hull JJA , Qi M , Montmayeur AM , Kumar D , Velasquez DE , Moon SS , Magaña LC , Betrapally N , Ng TFF , Jiang B , Marthaler D . PLoS One 2020 15 (12) e0244498 |
| Evaluation of Two Real-Time, TaqMan Reverse Transcription-PCR Assays for Detection of Rabies Virus in Circulating Variants from Argentina: Influence of Sequence Variation.
Caraballo DA , Lombardo MA , Becker P , Sabio MS , Lema C , Martínez LM , Beltrán FJ , Li Y , Cisterna DM . Viruses 2020 13 (1) |
| Identification of an HIV-1 and Neurosyphilis Cluster in Vermont.
Singh D , Switzer WM , Belcher R , Daltry D , Read JS . Clin Infect Dis 2020 73 (9) e3244-e3249
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