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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Dec 09, 2024. (Total: 6442 publications)
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Records 1-30 (of 42 Records)
Query Trace: Chow N[original query]
Clinical and genomic epidemiology of Coxsackievirus A21 and Enterovirus D68 in homeless shelters, King County, Washington, USA, 2019-2021
Cox SN , Casto AM , Franko NM , Chow EJ , Han PD , Gamboa L , Pfau B , Xie H , Kong K , Sereewit J , Rolfes MA , Mosites E , Uyeki TM , Greninger AL , Carone M , Shim MM , Bedford T , Shendure J , Boeckh M , Englund JA , Starita LM , Roychoudhury P , Chu HY .
Emerg Infect Dis 2024 30 (11) 2250-2260 type
Evolutionary dynamics in gut-colonizing Candida glabrata during caspofungin therapy: Emergence of clinically important mutations in sphingolipid biosynthesis
Hassoun Y , Aptekmann AA , Keniya MV , Gomez RY , Alayo N , Novi G , Quinteros C , Kaya F , Zimmerman M , Caceres DH , Chow NA , Perlin DS , Shor E .
PLoS Pathog 2024 20 (9) e1012521 type
Emergence of the novel sixth Candida auris Clade VI in Bangladesh
Khan T , Faysal NI , Hossain MM , Mah EMuneer S , Haider A , Moon SB , Sen D , Ahmed D , Parnell LA , Jubair M , Chow NA , Chowdhury F , Rahman M .
Microbiol Spectr 2024 e0354023 type
Molecular and epidemiological investigation of fluconazole-resistant Candida parapsilosis-Georgia, United States, 2021
Misas E , Witt LS , Farley MM , Thomas S , Jenkins EN , Gade L , Peterson JG , Mesa Restrepo A , Fridkin S , Lockhart SR , Chow NA , Lyman M .
Open Forum Infect Dis 2024 11 (6) ofae264 type
Notes from the field: Increase in nontoxigenic Corynebacterium diphtheriae - Washington, 2018-2023
Xie AG , Yomogida K , Berry I , Briggs NL , Esie P , Hamlet A , Paris K , Tromble E , DeBolt C , Graff NR , Chow EJ .
MMWR Morb Mortal Wkly Rep 2024 73 (17) 405-407 type
Remote surveillance and detection of SARS-CoV-2 transmission among household members in King County, Washington
Emanuels A , Casto AM , Heimonen J , O'Hanlon J , Chow EJ , Ogokeh C , Rolfes MA , Han PD , Hughes JP , Uyeki TM , Frazar C , Chung E , Starita LM , Englund JA , Chu HY .
BMC Infect Dis 2024 24 (1) 309 type
Emergence of zoonotic sporotrichosis in Brazil: a genomic epidemiology study
Ribeiro Dos Santos A , Misas E , Min B , Le N , Bagal UR , Parnell LA , Sexton DJ , Lockhart SR , de Souza Carvalho Melhem M , Takahashi JPF , Oliboni GM , Bonfieti LX , Cappellano P , Sampaio JLM , Araujo LS , Alves Filho HL , Venturini J , Chiller TM , Litvintseva AP , Chow NA .
Lancet Microbe 2024 type
Genomic description of acquired fluconazole- and echinocandin-resistance in patients with serial Candida glabrata isolates
Misas E , Seagle E , Jenkins EN , Rajeev M , Hurst S , Nunnally NS , Bentz ML , Lyman MM , Berkow E , Harrison LH , Schaffner W , Markus TM , Pierce R , Farley MM , Chow NA , Lockhart SR , Litvintseva AP .
J Clin Microbiol 2024 e0114023 type
Finding Candida auris in public metagenomic repositories
Mario-Vasquez JE , Bagal UR , Lowe E , Morgulis A , Phan J , Sexton DJ , Shiryev S , Slatkevičius R , Welsh R , Litvintseva AP , Blumberg M , Agarwala R , Chow NA .
PLoS One 2024 19 (1) e0291406 type
A phylogeographic description of histoplasma capsulatum in the United States
Bagal UR , Gade L , Benedict K , Howell V , Christophe N , Gibbons-Burgener S , Hallyburton S , Ireland M , McCracken S , Metobo AK , Signs K , Warren KA , Litvintseva AP , Chow NA .
J Fungi (Basel) 2023 9 (9) type
Risk of subsequent respiratory virus detection after primary virus detection in a community household study - King County, Washington 2019-2021
Heimonen J , Chow EJ , Wang Y , Hughes JP , Rogers J , Emanuels A , O'Hanlon J , Han PD , Wolf CR , Logue JK , Ogokeh CE , Rolfes MA , Uyeki TM , Starita L , Englund JA , Chu HY .
J Infect Dis 2023
Streptococcus pneumoniae nasal carriage patterns with and without common respiratory virus detections in households in Seattle, WA, USA before and during the COVID-19 pandemic
Bennett JC , Emanuels A , Heimonen J , O'Hanlon J , Hughes JP , Han PD , Chow EJ , Ogokeh CE , Rolfes MA , Lockwood CM , Pfau B , Uyeki TM , Shendure J , Hoag S , Fay K , Lee J , Sibley TR , Rogers JH , Starita LM , Englund JA , Chu HY .
Front Pediatr 2023 11 1198278 type
Comparing genomic variant identification protocols for Candida auris
Li X , Muñoz JF , Gade L , Argimon S , Bougnoux ME , Bowers JR , Chow NA , Cuesta I , Farrer RA , Maufrais C , Monroy-Nieto J , Pradhan D , Uehling J , Vu D , Yeats CA , Aanensen DM , d'Enfert C , Engelthaler DM , Eyre DW , Fisher MC , Hagen F , Meyer W , Singh G , Alastruey-Izquierdo A , Litvintseva AP , Cuomo CA .
Microb Genom 2023 9 (4) type
Genomic description of human clinical Aspergillus fumigatus isolates, California, 2020.
Misas E , Deng JZ , Gold JAW , Gade L , Nunnally NS , Georgacopoulos O , Bentz M , Berkow EL , Litvintseva AP , Chiller TM , Klausner JD , Chow NA .
Med Mycol 2023 61 (2) type
Genomic Epidemiology Linking Nonendemic Coccidioidomycosis to Travel.
Monroy-Nieto J , Gade L , Benedict K , Etienne KA , Litvintseva AP , Bowers JR , Engelthaler DM , Chow NA .
Emerg Infect Dis 2023 29 (1) 110-117 type
Optimization and Validation of Candida auris Short Tandem Repeat Analysis.
de Groot T , Spruijtenburg B , Parnell LA , Chow NA , Meis JF .
Microbiol Spectr 2022 10 (5) e0264522 type
Molecular Epidemiology of Blastomyces gilchristii Clusters, Minnesota, USA.
Bagal UR , Ireland M , Gross A , Fischer J , Bentz M , Berkow EL , Litvintseva AP , Chow NA .
Emerg Infect Dis 2022 28 (9) 1924-1926 type
SARS-CoV-2 Screening Testing in Schools: A Comparison of School- vs Home-Based Collection Methods.
Chung E , Magedson A , Emanuels A , Luiten K , Pfau B , Truong M , Chow EJ , Hughes JP , Uyeki TM , Englund JA , Nickerson DA , Lockwood CM , Shendure J , Starita LM , Chu HY .
J Pediatric Infect Dis Soc 2022 11 (11) 522-524
The clinical and genomic epidemiology of seasonal human coronaviruses in congregate homeless shelter settings: A repeated cross-sectional study.
Chow EJ , Casto AM , Rogers JH , Roychoudhury P , Han PD , Xie H , Mills MG , Nguyen TV , Pfau B , Cox SN , Wolf CR , Hughes JP , Uyeki TM , Rolfes MA , Mosites E , Shim MM , Duchin JS , Sugg N , Starita LA , Englund JA , Chu HY .
Lancet Reg Health Am 2022 15 100348
The Clinical and Genomic Epidemiology of Rhinovirus in Homeless Shelters-King County, Washington.
Chow EJ , Casto AM , Roychoudhury P , Han PD , Xie H , Pfau B , Nguyen TV , Sereewit J , Rogers JH , Cox SN , Wolf CR , Rolfes MA , Mosites E , Uyeki TM , Greninger AL , Hughes JP , Shim MM , Sugg N , Duchin JS , Starita LM , Englund JA , Chu HY .
J Infect Dis 2022 226 S304-S314 type
MycoSNP: A Portable Workflow for Performing Whole-Genome Sequencing Analysis of Candida auris.
Bagal UR , Phan J , Welsh RM , Misas E , Wagner D , Gade L , Litvintseva AP , Cuomo CA , Chow NA .
Methods Mol Biol 2022 2517 215-228 type
Factors Influencing Distribution of Coccidioides immitis in Soil, Washington State, 2016.
Chow NA , Kangiser D , Gade L , McCotter OZ , Hurst S , Salamone A , Wohrle R , Clifford W , Kim S , Salah Z , Oltean HN , Plumlee GS , Litvintseva AP .
mSphere 2021 6 (6) e0059821 type
Rapid Assessment and Containment of Candida auris Transmission in Postacute Care Settings-Orange County, California, 2019.
Karmarkar EN , O'Donnell K , Prestel C , Forsberg K , Gade L , Jain S , Schan D , Chow N , McDermott D , Rossow J , Toda M , Ruiz R , Hun S , Dale JL , Gross A , Maruca T , Glowicz J , Brooks R , Bagheri H , Nelson T , Gualandi N , Khwaja Z , Horwich-Scholefield S , Jacobs J , Cheung M , Walters M , Jacobs-Slifka K , Stone ND , Mikhail L , Chaturvedi S , Klein L , Vagnone PS , Schneider E , Berkow EL , Jackson BR , Vallabhaneni S , Zahn M , Epson E .
Ann Intern Med 2021 174 (11) 1554-1562 type
Epidemiology of anal human papillomavirus infection and high-grade squamous intraepithelial lesions in 29 900 men according to HIV status, sexuality, and age: a collaborative pooled analysis of 64 studies.
Wei F , Gaisa MM , D'Souza G , Xia N , Giuliano AR , Hawes SE , Gao L , Cheng SH , Donà MG , Goldstone SE , Schim van der Loeff MF , Neukam K , Meites E , Poynten IM , Dai J , Combes JD , Wieland U , Burgos J , Wilkin TJ , Hernandez AL , Iribarren Díaz M , Hidalgo-Tenorio C , Valencia Arredondo M , Nyitray AG , Wentzensen N , Chow EP , Smelov V , Nowak RG , Phanuphak N , Woo YL , Choi Y , Hu Y , Schofield AM , Woestenberg PJ , Chikandiwa AT , Hickey AC , de Pokomandy A , Murenzi G , Péré H , Del Pino M , Ortiz AP , Charnot-Katsikas A , Liu X , Chariyalertsak S , Strong C , Ong JJ , Yunihastuti E , Etienney I , Ferré VM , Zou H , Segondy M , Chinyowa S , Alberts CJ , Clifford GM .
Lancet HIV 2021 8 (9) e531-e543
Clade distribution of Candida auris in South Africa using whole genome sequencing of clinical and environmental isolates.
Naicker SD , Maphanga TG , Chow NA , Allam M , Kwenda S , Ismail A , Govender NPfor Germs- SA .
Emerg Microbes Infect 2021 10 (1) 1300-1308 type
Comparison of Symptoms and RNA Levels in Children and Adults With SARS-CoV-2 Infection in the Community Setting.
Chung E , Chow EJ , Wilcox NC , Burstein R , Brandstetter E , Han PD , Fay K , Pfau B , Adler A , Lacombe K , Lockwood CM , Uyeki TM , Shendure J , Duchin JS , Rieder MJ , Nickerson DA , Boeckh M , Famulare M , Hughes JP , Starita LM , Bedford T , Englund JA , Chu HY .
JAMA Pediatr 2021 175 (10) e212025 type
Candida auris Whole-Genome Sequence Benchmark Dataset for Phylogenomic Pipelines
Welsh RM , Misas E , Forsberg K , Lyman M , Chow NA .
J Fungi (Basel) 2021 7 (3) type
Mitochondrial Genome Sequences of the Emerging Fungal Pathogen Candida auris .
Misas E , Chow NA , Gómez OM , Muñoz JF , McEwen JG , Litvintseva AP , Clay OK .
Front Microbiol 2020 11 560332 type
Tracing the Evolutionary History and Global Expansion of Candida auris Using Population Genomic Analyses.
Chow NA , Munoz JF , Gade L , Berkow EL , Li X , Welsh RM , Forsberg K , Lockhart SR , Adam R , Alanio A , Alastruey-Izquierdo A , Althawadi S , Arauz AB , Ben-Ami R , Bharat A , Calvo B , Desnos-Ollivier M , Escandon P , Gardam D , Gunturu R , Heath CH , Kurzai O , Martin R , Litvintseva AP , Cuomo CA .
mBio 2020 11 (2) type
Use of whole-genome sequencing to detect an outbreak of Malassezia pachydermatis infection and colonization in a neonatal intensive care unit-California, 2015-2016.
Chow NA , Chinn R , Pong A , Schultz K , Kim J , Gade L , Jackson BR , Beer KD , Litvintseva AP .
Infect Control Hosp Epidemiol 2020 41 (7) 1-3 type
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