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Public Health Genomics and Precision Health Knowledge Base (v10.0)
PHGKB
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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)
CDC-Authored Genomics and Precision Health Publications Database
Last data update: Sep 30, 2024
. (Total: 6327 publications)
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Year
Journal
Records 1-20 (of 20 Records)
Query Trace:
Chen JC[original query]
Multistate nontyphoidal Salmonella and Shiga toxin-producing Escherichia coli outbreaks linked to international travel - United States, 2017-2020
Habrun CA
,
Birhane MG
,
François Watkins LK
,
Benedict K
,
Bottichio L
,
Nemechek K
,
Tolar B
,
Schroeder MN
,
Chen JC
,
Caidi H
,
Robyn M
,
Nichols M
.
Epidemiol Infect 2024 1-33
Antimicrobial resistance in multistate outbreaks of nontyphoidal Salmonella infections linked to animal contact-United States, 2015-2018
Frey E ,
Stapleton GS
,
Nichols MC , Gollarza LM , Birhane M , Chen JC , McCullough A , Carleton HA , Trees E , Hise KB , Tolar B , Francois Watkins L .
J Clin Microbiol 2023 e0098123
Evaluation of whole and core genome multilocus sequence typing allele schemes for Salmonella enterica outbreak detection in a national surveillance network, PulseNet USA
Leeper MM
,
Tolar BM
,
Griswold T
,
Vidyaprakash E
,
Hise KB
,
Williams GM
,
Im SB
,
Chen JC
,
Pouseele H ,
Carleton HA
.
Front Microbiol 2023 14 1254777
SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data.
Griswold T
,
Kapsak C
,
Chen JC
,
den Bakker HC ,
Williams G
,
Kelley A
,
Vidyaprakash E
,
Katz LS
.
J Open Source Softw 2021 6 (60)
Increased Multidrug-Resistant Salmonella enterica I Serotype 4,[5],12:i:- Infections Associated with Pork, United States, 2009-2018.
Plumb ID
,
Brown AC
,
Stokes EK
,
Chen JC
,
Carleton H
,
Tolar B
,
Sundararaman P
,
Saupe A ,
Payne DC
,
Shah HJ
,
Folster JP
,
Friedman CR
.
Emerg Infect Dis 2023 29 (2) 314-22
Molecular characterization of circulating Salmonella Typhi strains in an urban informal settlement in Kenya.
Ochieng C ,
Chen JC
,
Osita MP ,
Katz LS
,
Griswold T
,
Omballa V , Ng'eno E , Ouma A , Wamola N , Opiyo C , Achieng L ,
Munywoki PK
,
Hendriksen RS ,
Freeman M
,
Mikoleit M
,
Juma B
,
Bigogo G ,
Mintz E
,
Verani JR
,
Hunsperger E
,
Carleton HA
.
PLoS Negl Trop Dis 2022 16 (8) e0010704
Genomic Diversity, Antimicrobial Resistance, and Virulence Gene Profiles of Salmonella Serovar Kentucky Isolated from Humans, Food, and Animal Ceca Content Sources in the United States.
Tate H , Hsu CH ,
Chen JC
,
Han J , Foley SL ,
Folster JP
,
Francois Watkins LK
,
Reynolds J
,
Tillman GE , Nyirabahizi E , Zhao S .
Foodborne Pathog Dis 2022 19 (8) 509-521
Genomic Surveillance for SARS-CoV-2 Variants: Predominance of the Delta (B.1.617.2) and Omicron (B.1.1.529) Variants - United States, June 2021-January 2022.
Lambrou AS
,
Shirk P
,
Steele MK
,
Paul P
,
Paden CR
,
Cadwell B
,
Reese HE
,
Aoki Y
,
Hassell N
,
Caravas J
,
Kovacs NA
,
Gerhart JG ,
Ng HJ
,
Zheng XY ,
Beck A
,
Chau R
,
Cintron R
,
Cook PW
,
Gulvik CA
,
Howard D
,
Jang Y
,
Knipe K
,
Lacek KA
,
Moser KA ,
Paskey AC
,
Rambo-Martin BL
,
Nagilla RR ,
Rethchless AC
,
Schmerer MW
,
Seby S
,
Shephard SS
,
Stanton RA
,
Stark TJ
,
Uehara A
,
Unoarumhi Y
,
Bentz ML
,
Burhgin A
,
Burroughs M
,
Davis ML
,
Keller MW
,
Keong LM ,
Le SS
,
Lee JS
,
Madden Jr JC
,
Nobles S
,
Owouor DC
,
Padilla J
,
Sheth M
,
Wilson MM
,
Talarico S
,
Chen JC
,
Oberste MS
,
Batra D
,
McMullan LK
,
Halpin AL
,
Galloway SE
,
MacCannell DR
,
Kondor R
,
Barnes J
,
MacNeil A
,
Silk BJ
,
Dugan VG
,
Scobie HM
,
Wentworth DE
.
MMWR Morb Mortal Wkly Rep 2022 71 (6) 206-211
Outbreak of Multidrug-Resistant Salmonella Heidelberg Infections Linked to Dairy Calf Exposure, United States, 2015-2018.
Nichols M
,
Gollarza L
,
Sockett D , Aulik N , Patton E ,
Francois Watkins LK
,
Gambino-Shirley KJ
,
Folster JP
,
Chen JC
,
Tagg KA
,
Stapleton GS
,
Trees E ,
Ellison Z
,
Lombard J , Morningstar-Shaw B , Schlater L , Elbadawi L , Klos R .
Foodborne Pathog Dis 2022 19 (3) 199-208
Ongoing Outbreak of Extensively Drug-Resistant Campylobacter jejuni Infections Associated With US Pet Store Puppies, 2016-2020.
Francois Watkins LK
,
Laughlin ME
,
Joseph LA
,
Chen JC
,
Nichols M
,
Basler C
,
Breazu R
,
Bennett C
,
Koski L
,
Montgomery MP
,
Hughes MJ
,
Robertson S
,
Lane CG
,
Singh AJ , Stanek D , Salehi E , Brandt E , McGillivary G , Mowery J , DeMent J ,
Aubert RD
,
Geissler AL
,
de Fijter S ,
Williams IT
,
Friedman CR
.
JAMA Netw Open 2021 4 (9) e2125203
Azithromycin and Ciprofloxacin Treatment Outcomes During an Outbreak of Multidrug-Resistant Shigella sonnei Infections in a Retirement Community-Vermont, 2018.
Gharpure R
,
Friedman CR
,
Fialkowski V ,
Collins JP
,
Strysko J
,
Marsh ZA
,
Chen JC
,
Meservey EH ,
Adediran AA
,
Schroeder MN
,
Wadhwa A
,
Fullerton KE
,
Watkins LF
.
Clin Infect Dis 2021 74 (3) 455-460
Whole-Genome Sequencing Reveals the Presence of the blaCTX-M-65 Gene in Extended-Spectrum β-Lactamase-Producing and Multi-Drug-Resistant Clones of Salmonella Serovar Infantis Isolated from Broiler Chicken Environments in the Galapagos Islands
Burnett E , Ishida M , de Janon S , Naushad S , Duceppe MO , Gao R , Jardim A ,
Chen JC
,
Tagg KA
,
Ogunremi D , Vinueza-Burgos C .
Antibiotics (Basel) 2021 10 (3) 1-13
Carriage and Gene Content Variability of the pESI-Like Plasmid Associated with Salmonella Infantis Recently Established in United States Poultry Production.
McMillan EA , Wasilenko JL ,
Tagg KA
,
Chen JC
,
Simmons M , Gupta SK , Tillman GE ,
Folster J
,
Jackson CR , Frye JG .
Genes (Basel) 2020 11 (12)
Update on Extensively Drug-Resistant Salmonella Serotype Typhi Infections Among Travelers to or from Pakistan and Report of Ceftriaxone-Resistant Salmonella Serotype Typhi Infections Among Travelers to Iraq - United States, 2018-2019.
Francois Watkins LK
,
Winstead A
,
Appiah GD
,
Friedman CR
,
Medalla F
,
Hughes MJ
,
Birhane MG
,
Schneider ZD
,
Marcenac P
,
Hanna SS , Godbole G , Walblay KA , Wiggington AE ,
Leeper M
,
Meservey EH
,
Tagg KA
,
Chen JC
,
Abubakar A , Lami F , Asaad AM , Sabaratnam V , Ikram A , Angelo KM , Walker A ,
Mintz E
.
MMWR Morb Mortal Wkly Rep 2020 69 (20) 618-622
Novel quinolone resistance determinant, qepA8, in Shigella flexneri isolated in the United States, 2016.
Webb HE , Tagg KA ,
Chen JC
,
Kim J ,
Lindsey R
,
Francois Watkins LK
,
Karp BE
,
Sugawara Y ,
Folster JP
.
Antimicrob Agents Chemother 2019 63 (12)
Outbreak of Salmonella Newport Infections with Decreased Susceptibility to Azithromycin Linked to Beef Obtained in the United States and Soft Cheese Obtained in Mexico - United States, 2018-2019.
Plumb ID
,
Schwensohn CA
,
Gieraltowski L
,
Tecle S ,
Schneider ZD
,
Freiman J , Cote A , Noveroske D , Kolsin J ,
Brandenburg J
,
Chen JC
,
Tagg KA
,
White PB
,
Shah HJ
,
Francois Watkins LK
,
Wise ME
,
Friedman CR
.
MMWR Morb Mortal Wkly Rep 2019 68 (33) 713-717
Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016.
Pattabiraman V
,
Katz LS
,
Chen JC
,
McCullough AE ,
Trees E
.
PLoS One 2018 13 (12) e0208735
Multidrug-Resistant Campylobacter jejuni Outbreak Linked to Puppy Exposure - United States, 2016-2018.
Montgomery MP
,
Robertson S
,
Koski L
,
Salehi E ,
Stevenson LM
,
Silver R
,
Sundararaman P
,
Singh A ,
Joseph LA
,
Weisner MB , Brandt E , Prarat M , Bokanyi R ,
Chen JC
,
Folster JP
,
Bennett CT
,
Francois Watkins LK
,
Aubert RD
,
Chu A , Jackson J , Blanton J , Ginn A , Ramadugu K , Stanek D , DeMent J , Cui J , Zhang Y ,
Basler C
,
Friedman CR
,
Geissler AL
,
Crowe SJ
,
Dowell N
,
Dixon S
,
Whitlock L
,
Williams I
,
Jhung MA
,
Nichols MC
,
de Fijter S ,
Laughlin ME
.
MMWR Morb Mortal Wkly Rep 2018 67 (37) 1032-1035
Novel trimethoprim resistance gene dfrA34 identified in Salmonella Heidelberg in the USA.
Tagg KA ,
Francois Watkins L
,
Moore MD , Bennett C , Joung YJ , Chen JC ,
Folster JP
.
J Antimicrob Chemother 2018 74 (1) 38-41
Implementation of Whole Genome Sequencing (WGS) for Identification and Characterization of Shiga Toxin-Producing Escherichia coli (STEC) in the United States.
Lindsey RL
,
Pouseele H , Chen JC ,
Strockbine NA
,
Carleton HA
.
Front Microbiol 2016 7 766
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Page last reviewed:
Feb 1, 2024
Content source:
Public Health Genomics Branch in the Division of Blood Disorders and Public Health Genomics
,
National Center on Birth Defects and Developmental Disabilities
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