CDC-Authored Genomics and Precision Health Publications Database

---

Last data update: Nov 04, 2024. (Total: 6390 publications)

All Cancer Diabetes Economic Equity Environmental FHH HLBS ID Implementation ND PGx PI Rare RCH dataset

Filtered By: Select to fine-tune your search Year Journal

Records 1-19 (of 19 Records)

Query Trace: Castro CJ[original query]
Complete genome sequences of nine double recombinant vaccine-derived novel oral poliovirus type 2 genomes from Nigeria 2023-2024 Castro CJ , Oderinde BS , Poston KD , Mawashi KY , Bullard K , Akinola M , Meade C , Liu H , Hu F , Bullows JE , Gonzalez Z , Pang H , Sarris S , Agha C , Dybdahl-Sissoko N , Perry DB , McDuffie L , Henderson E , Burns CC , Jorba J , Baba M . Microbiol Resour Announc 2024 e0088124
Molecular epidemiology of enteroviruses from Guatemalan wastewater isolated from human lung fibroblasts Sayyad L , Harrington C , Castro CJ , Belgasmi-Allen H , Jeffries Miles S , Hill J , Mendoza Prillwitz ML , Gobern L , Gaitán E , Delgado AP , Castillo Signor L , Rondy M , Rey-Benito G , Gerloff N . PLoS One 2024 19 (7) e0305108
Complete genome sequences of six S19 poliovirus reference strains Castro CJ , Wiese N , Bullows JE , Poston KD , Meade C , Jorba J , Mainou BA . Microbiol Resour Announc 2024 e0008024
Nearly Complete Genome Sequences of Type 2 Sabin-Like Polioviruses from Northern Nigerian Poliovirus Surveillance, 2016 to 2018. Zhao K , Schmidt A , Tang K , Castro CJ , Liu H , Pang H , Chen Q , Baba M , Soji OB , Bukbuk D , Akinola M , Adeniji JA , Marine RL , Ng TFF , Jorba J , Burns CC . Microbiol Resour Announc 2022 12 (1) e0073522
VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data. Wagner DD , Marine RL , Ramos E , Ng TFF , Castro CJ , Okomo-Adhiambo M , Harvey K , Doho G , Kelly R , Jain Y , Tatusov RL , Silva H , Rota PA , Khan AN , Oberste MS . Microbiol Spectr 2022 10 (2) e0256421
Next-Generation Sequencing of Human Respiratory Syncytial Virus Subgroups A and B Genomes. Wang L , Ng TFF , Castro CJ , Marine RL , Magaña LC , Esona M , Peret TCT , Thornburg NJ . J Virol Methods 2021 299 114335
Whole-Genome Sequences of Enteroviruses D94 and D111 Isolated from Stool Specimens in Angola. Chern SW , Gumede N , Castro CJ , Nix WA , Ng TFF . Microbiol Resour Announc 2021 10 (40) e0072821
The effect of variant interference on de novo assembly for viral deep sequencing. Castro CJ , Marine RL , Ramos E , Ng TFF . BMC Genomics 2020 21 (1) 421
Comparison of Illumina MiSeq and the Ion Torrent PGM and S5 platforms for whole-genome sequencing of picornaviruses and caliciviruses. Marine RL , Magana LC , Castro CJ , Zhao K , Montmayeur AM , Schmidt A , Diez-Valcarce M , Fan Ng TF , Vinje J , Burns CC , Allan Nix W , Rota PA , Oberste MS . J Virol Methods 2020 280 113865
Nearly Complete Genome Sequence of an Echovirus 30 Strain from a Cluster of Aseptic Meningitis Cases in California, September 2017. Pan CY , Huynh T , Padilla T , Chen A , Ng TFF , Marine RL , Castro CJ , Nix WA , Wadford DA . Microbiol Resour Announc 2019 8 (44)
Outbreak of diarrhoea in piglets caused by novel rotavirus genotype G4P[49] in north-western district of Bangladesh, February 2014. Sarkar S , Dioh Esona M , Gautam R , Castro CJ , Ng TFF , Haque W , Khan SU , Hossain ME , Rahman MZ , Gurley ES , Kennedy ED , Bowen MD , Parashar UD , Rahman M . Transbound Emerg Dis 2019 67 (1) 442-449
Complete Genome Sequences of Human Astrovirus Prototype Strains (Types 1 to 8). Castro CJ , Reynolds E , Monroe SS , Marine RL , Vinje J . Microbiol Resour Announc 2019 8 (7)
Strengthening laboratory surveillance of viral pathogens: Experiences and lessons learned building next-generation sequencing capacity in Ghana. Marine RL , Ntim NAA , Castro CJ , Attiku KO , Pratt D , Duker E , Agbosu E , Ng TFF , Gatei W , Obodai E , Odoom JK , Walker CL , Rota PA , Oberste MS , Ampofo WK , Balajee SA . Int J Infect Dis 2019 81 231-234
Genetic diversity of human sapovirus across the Americas. Diez-Valcarce M , Castro CJ , Marine RL , Halasa N , Mayta H , Saito M , Tsaknaridis L , Pan CY , Bucardo F , Becker-Dreps S , Lopez MR , Magana LC , Ng TFF , Vinje J . J Clin Virol 2018 104 65-72
Near-Complete Genome Sequences of Several New Norovirus Genogroup II Genotypes. Chhabra P , Aswath K , Collins N , Ahmed T , Olortegui MP , Kosek M , Cebelinski E , Cooper PJ , Bucardo F , Lopez MR , Castro CJ , Marine RL , Ng TFF , Vinje J . Genome Announc 2018 6 (6)
Complete Genome Sequences of Mumps and Measles Virus Isolates from Three States in the United States. Magana LC , Espinosa A , Marine RL , Ng TFF , Castro CJ , Montmayeur AM , Hacker JK , Scott S , Whyte T , Bankamp B , Oberste MS , Rota PA . Genome Announc 2017 5 (33)
Genetic and Epidemiologic Trends of Norovirus Outbreaks in the US Demonstrated Emergence of Novel GII.4 Recombinant Viruses, 2013-2016. Cannon JL , Barclay L , Collins NR , Wikswo ME , Castro CJ , Magana LC , Gregoricus N , Marine RL , Chhabra P , Vinje J . J Clin Microbiol 2017 55 (7) 2208-2221
U50: A New Metric for Measuring Assembly Output Based on Non-Overlapping, Target-Specific Contigs. Castro CJ , Ng TFF . J Comput Biol 2017 24 (11) 1071-1080
High-Throughput Next Generation Sequencing of Polioviruses. Montmayeur AM , Ng TF , Schmidt A , Zhao K , Magana L , Iber J , Castro CJ , Chen Q , Henderson E , Ramos E , Shaw J , Tatusov RL , Dybdahl-Sissoko N , Endegue-Zanga MC , Adeniji JA , Oberste MS , Burns CC . J Clin Microbiol 2016 55 (2) 606-615