CDC-Authored Genomics and Precision Health Publications Database
Last data update: Sep 25, 2023. (Total: 4416 publications since 2011)
| Query Trace: Carleton H[original query] |
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| Predicting food sources of Listeria monocytogenes based on genomic profiling using random forest model
Gu W , Cui Z , Stroika S , Carleton HA , Conrad A , Katz LS , Richardson LC , Hunter J , Click ES , Bruce BB . Foodborne Pathog Dis 2023 |
| Evaluation of core genome and whole genome multilocus sequence typing schemes for Campylobacter jejuni and Campylobacter coli outbreak detection in the USA
Joseph LA , Griswold T , Vidyaprakash E , Im SB , Williams GM , Pouseele HA , Hise KB , Carleton HA . Microb Genom 2023 9 (5) |
| Cronobacter sakazakii Infections in Two Infants Linked to Powdered Infant Formula and Breast Pump Equipment - United States, 2021 and 2022.
Haston JC , Miko S , Cope JR , McKeel H , Walters C , Joseph LA , Griswold T , Katz LS , Andjar AA , Tourdot L , Rounds J , Vagnone P , Medus C , Harris J , Geist R , Neises D , Wiggington A , Smith T , Im MS , Wheeler C , Smith P , Carleton HA , Lee CC . MMWR Morb Mortal Wkly Rep 2023 72 (9) 223-226 |
| Genome Sequences from a Reemergence of Vibrio cholerae in Haiti, 2022 Reveal Relatedness to Previously Circulating Strains.
Walters C , Chen J , Stroika S , Katz LS , Turnsek M , Compre V , Im MS , Gomez S , McCullough A , Landaverde C , Putney J , Caidi H , Folster J , Carleton HA , Boncy J , Lee CC . J Clin Microbiol 2023 e0014223 |
| Increased Multidrug-Resistant Salmonella enterica I Serotype 4,[5],12:i:- Infections Associated with Pork, United States, 2009-2018.
Plumb ID , Brown AC , Stokes EK , Chen JC , Carleton H , Tolar B , Sundararaman P , Saupe A , Payne DC , Shah HJ , Folster JP , Friedman CR . Emerg Infect Dis 2023 29 (2) 314-22 |
| Molecular characterization of circulating Salmonella Typhi strains in an urban informal settlement in Kenya.
Ochieng C , Chen JC , Osita MP , Katz LS , Griswold T , Omballa V , Ng'eno E , Ouma A , Wamola N , Opiyo C , Achieng L , Munywoki PK , Hendriksen RS , Freeman M , Mikoleit M , Juma B , Bigogo G , Mintz E , Verani JR , Hunsperger E , Carleton HA . PLoS Negl Trop Dis 2022 16 (8) e0010704 |
| The power, potential, benefits, and challenges of implementing high-throughput sequencing in food safety systems.
Imanian B , Donaghy J , Jackson T , Gummalla S , Ganesan B , Baker RC , Henderson M , Butler EK , Hong Y , Ring B , Thorp C , Khaksar R , Samadpour M , Lawless KA , MacLaren-Lee I , Carleton HA , Tian R , Zhang W , Wan J . NPJ Sci Food 2022 6 (1) 35 |
| Sequencing of Enteric Bacteria: Library Preparation Procedure Matters for Accurate Identification and Characterization.
Poates A , Truong J , Lindsey R , Griswold T , Williams-Newkirk AJ , Carleton H , Trees E . Foodborne Pathog Dis 2022 19 (8) 569-578 |
| PulseNet International Survey on the Implementation of Whole Genome Sequencing in Low and Middle-Income Countries for Foodborne Disease Surveillance.
Davedow T , Carleton H , Kubota K , Palm D , Schroeder M , Gerner-Smidt P , Al-Jardani A , Chinen I , Kam KM , Smith AM , Nadon C . Foodborne Pathog Dis 2022 19 (5) 332-340 |
| The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.
Stevens EL , Carleton HA , Beal J , Tillman GE , Lindsey RL , Lauer AC , Pightling A , Jarvis KG , Ottesen A , Ramachandran P , Hintz L , Katz LS , Folster JP , Whichard JM , Trees E , Timme RE , McDermott P , Wolpert B , Bazaco M , Zhao S , Lindley S , Bruce BB , Griffin PM , Brown E , Allard M , Tallent S , Irvin K , Hoffmann M , Wise M , Tauxe R , Gerner-Smidt P , Simmons M , Kissler B , Defibaugh-Chavez S , Klimke W , Agarwala R , Lindsay J , Cook K , Austerman SR , Goldman D , McGarry S , Hale KR , Dessai U , Musser SM , Braden C . J Food Prot 2022 85 (5) 755-772 |
| Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks.
Wagner DD , Carleton HA , Trees E , Katz LS . PeerJ 2021 9 e12446 |
| Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises.
Timme RE , Lafon PC , Balkey M , Adams JK , Wagner D , Carleton H , Strain E , Hoffmann M , Sabol A , Rand H , Lindsey R , Sheehan D , Baugher JD , Trees E . Sci Data 2020 7 (1) 402 |
| Comparison of Molecular Subtyping and Antimicrobial Resistance Detection Methods Used in a Large Multi-State Outbreak of Extensively Drug-Resistant Campylobacter jejuni Infections Linked to Pet Store Puppies.
Joseph LA , FrancoisWatkins LK , Chen J , Tagg KA , Bennett C , Caidi H , Folster JP , Laughlin ME , Koski L , Silver R , Stevenson L , Robertson S , Pruckler J , Nichols M , Pouseele H , Carleton HA , Basler C , Friedman CR , Geissler A , Hise KB , Aubert RD . J Clin Microbiol 2020 58 (10) |
| Pathogen Genomics in Public Health.
Armstrong GL , MacCannell DR , Taylor J , Carleton HA , Neuhaus EB , Bradbury RS , Posey JE , Gwinn M . N Engl J Med 2019 381 (26) 2569-2580 |
| Implications of Mobile Genetic Elements for Salmonella enterica Single-Nucleotide Polymorphism Subtyping and Source Tracking Investigations.
Li S , Zhang S , Baert L , Jagadeesan B , Ngom-Bru C , Griswold T , Katz LS , Carleton HA , Deng X . Appl Environ Microbiol 2019 85 (24) |
| PulseNet and the Changing Paradigm of Laboratory-Based Surveillance for Foodborne Diseases.
Kubota KA , Wolfgang WJ , Baker DJ , Boxrud D , Turner L , Trees E , Carleton HA , Gerner-Smidt P . Public Health Rep 2019 134 22s-28s |
| Multidrug-Resistant Salmonella I 4,[5],12:i:- and Salmonella Infantis Infections Linked to Whole Roasted Pigs from a Single Slaughter and Processing Facility.
Kawakami V , Bottichio L , Lloyd J , Carleton H , Leeper M , Olson G , Li Z , Kissler B , Angelo KM , Whitlock L , Sinatra J , Defibaugh-Chavez S , Bicknese A , Kay M , Wise ME , Basler C , Duchin J . J Food Prot 2019 82 (9) 1615-1624 |
| Interpretation of Whole-Genome Sequencing for Enteric Disease Surveillance and Outbreak Investigation.
Besser JM , Carleton HA , Trees E , Stroika SG , Hise K , Wise M , Gerner-Smidt P . Foodborne Pathog Dis 2019 16 (7) 504-512 |
| Metagenomic Approaches for Public Health Surveillance of Foodborne Infections: Opportunities and Challenges.
Carleton HA , Besser J , Williams-Newkirk AJ , Huang A , Trees E , Gerner-Smidt P . Foodborne Pathog Dis 2019 16 (7) 474-479 |
| Multistate outbreak of Salmonella Paratyphi B variant L(+) tartrate(+) and Salmonella Weltevreden infections linked to imported frozen raw tuna: USA, March-July 2015.
Hassan R , Tecle S , Adcock B , Kellis M , Weiss J , Saupe A , Sorenson A , Klos R , Blankenship J , Blessington T , Whitlock L , Carleton HA , Concepcion-Acevedo J , Tolar B , Wise M , Neil KP . Epidemiol Infect 2018 146 (11) 1-7 |
| Notes from the Field: Investigation of an Outbreak of Salmonella Paratyphi B Variant L(+) tartrate + (Java) Associated with Ball Python Exposure - United States, 2017.
Krishnasamy V , Stevenson L , Koski L , Kellis M , Schroeder B , Sundararajan M , Ladd-Wilson S , Sampsel A , Mannell M , Classon A , Wagner D , Hise K , Carleton H , Trees E , Schlater L , Lantz K , Nichols M . MMWR Morb Mortal Wkly Rep 2018 67 (19) 562-563 |
| Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance.
Timme Ruth E, Rand Hugh, Shumway Martin, Trees Eija K, Simmons Mustafa, Agarwala Richa, Davis Steven, Tillman Glenn E, Defibaugh-Chavez Stephanie, Carleton Heather A, Klimke William A, Katz Lee S. PeerJ 2017 5e3893 . PeerJ 2017 5e3893 |
| An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes.
Henri C , Leekitcharoenphon P , Carleton HA , Radomski N , Kaas RS , Mariet JF , Felten A , Aarestrup FM , GernerSmidt P , Roussel S , Guillier L , Mistou MY , Hendriksen RS . Front Microbiol 2017 8 2351 |
| Next-Generation Sequencing Technologies and their Application to the Study and Control of Bacterial Infections.
Besser John, Carleton Heather A, Gerner-Smidt Peter, Lindsey Rebecca L, Trees Eija.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2017 Oct . Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2017 Oct |
| PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance.
Nadon Celine, Van Walle Ivo, Gerner-Smidt Peter, Campos Josefina, Chinen Isabel, Concepcion-Acevedo Jeniffer, Gilpin Brent, Smith Anthony M, Man Kam Kai, Perez Enrique, Trees Eija, Kubota Kristy, Takkinen Johanna, Nielsen Eva Møller, Carleton Heather, .Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2017 Jun (23) . Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2017 Jun (23) |
| Whole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes associated with an outbreak linked to cheese, United States, 2013.
Chen Yi, Luo Yan, Carleton Heather, Timme Ruth, Melka David, Muruvanda Tim, Wang Charles, Kastanis George, Katz Lee S, Turner Lauren, Fritzinger Angela, Moore Terence, Stones Robert, Blankenship Joseph, Salter Monique, Parish Mickey, Hammack Thomas S, Evans Peter S, Tarr Cheryl L, Allard Marc W, Strain Errol A, Brown Eric W.Applied and environmental microbiology 2017 May . Applied and environmental microbiology 2017 May |
| A Comparative Analysis of the Lyve-SET Phylogenomics Pipeline for Genomic Epidemiology of Foodborne Pathogens.
Katz Lee S, Griswold Taylor, Williams-Newkirk Amanda J, Wagner Darlene, Petkau Aaron, Sieffert Cameron, Van Domselaar Gary, Deng Xiangyu, Carleton Heather A.Frontiers in microbiology 2017 375 . Frontiers in microbiology 2017 375 |
| Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes.
Moura Alexandra, Criscuolo Alexis, Pouseele Hannes, Maury Mylène M, Leclercq Alexandre, Tarr Cheryl, Björkman Jonas T, Dallman Timothy, Reimer Aleisha, Enouf Vincent, Larsonneur Elise, Carleton Heather, Bracq-Dieye Hélène, Katz Lee S, Jones Louis, Touchon Marie, Tourdjman Mathieu, Walker Matthew, Stroika Steven, Cantinelli Thomas, Chenal-Francisque Viviane, Kucerova Zuzana, Rocha Eduardo P C, Nadon Celine, Grant Kathie, Nielsen Eva M, Pot Bruno, Gerner-Smidt Peter, Lecuit Marc, Brisse Sylvain.Nature microbiology 2016 Oct 16185 . Nature microbiology 2016 Oct 16185 |
| Implementation of Whole Genome Sequencing (WGS) for Identification and Characterization of Shiga Toxin-Producing Escherichia coli (STEC) in the United States.
Lindsey Rebecca L, Pouseele Hannes, Chen Jessica C, Strockbine Nancy A, Carleton Heather A.Frontiers in microbiology 2016 766 . Frontiers in microbiology 2016 766 |
| Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation.
Jackson Brendan R, Tarr Cheryl, Strain Errol, Jackson Kelly A, Conrad Amanda, Carleton Heather, Katz Lee S, Stroika Steven, Gould L Hannah, Mody Rajal K, Silk Benjamin J, Beal Jennifer, Chen Yi, Timme Ruth, Doyle Matthew, Fields Angela, Wise Matthew, Tillman Glenn, Defibaugh-Chavez Stephanie, Kucerova Zuzana, Sabol Ashley, Roache Katie, Trees Eija, Simmons Mustafa, Wasilenko Jamie, Kubota Kristy, Pouseele Hannes, Klimke William, Besser John, Brown Eric, Allard Marc, Gerner-Smidt Peter. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 63(3) 380-6 . Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2016 63(3) 380-6 |
- Page last reviewed:Feb 1, 2023
- Page last updated:Sep 25, 2023
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