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Public Health Genomics and Precision Health Knowledge Base (v10.0)
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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)
CDC-Authored Genomics and Precision Health Publications Database
Last data update: Oct 28, 2024
. (Total: 6371 publications)
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Records 1-30 (of 34 Records)
Query Trace:
Carleton H[original query]
Genetic diversity in Salmonella enterica in outbreaks of foodborne and zoonotic origin in the USA in 2006-2017
Trees E ,
Carleton HA
,
Folster JP
,
Gieraltowski L
,
Hise K
,
Leeper M
,
Nguyen TA
,
Poates A ,
Sabol A
,
Tagg KA
,
Tolar B
,
Vasser M
,
Webb HE
,
Wise M
,
Lindsey RL
.
Microorganisms 2024 12 (8)
Rapid identification of enteric bacteria from whole genome sequences using average nucleotide identity metrics
Lindsey RL
,
Gladney LM
,
Huang AD
,
Griswold T
,
Katz LS
,
Dinsmore BA
,
Im MS
,
Kucerova Z
,
Smith PA
,
Lane C
,
Carleton HA
.
Front Microbiol 2023 14 1225207
Antimicrobial resistance in multistate outbreaks of nontyphoidal Salmonella infections linked to animal contact-United States, 2015-2018
Frey E ,
Stapleton GS
,
Nichols MC , Gollarza LM , Birhane M , Chen JC , McCullough A , Carleton HA , Trees E , Hise KB , Tolar B , Francois Watkins L .
J Clin Microbiol 2023 e0098123
Evaluation of whole and core genome multilocus sequence typing allele schemes for Salmonella enterica outbreak detection in a national surveillance network, PulseNet USA
Leeper MM
,
Tolar BM
,
Griswold T
,
Vidyaprakash E
,
Hise KB
,
Williams GM
,
Im SB
,
Chen JC
,
Pouseele H ,
Carleton HA
.
Front Microbiol 2023 14 1254777
Predicting food sources of Listeria monocytogenes based on genomic profiling using random forest model
Gu W
,
Cui Z
,
Stroika S
,
Carleton HA
,
Conrad A
,
Katz LS
,
Richardson LC
,
Hunter J
,
Click ES
,
Bruce BB
.
Foodborne Pathog Dis 2023 20 (12) 579-586
Evaluation of core genome and whole genome multilocus sequence typing schemes for Campylobacter jejuni and Campylobacter coli outbreak detection in the USA
Joseph LA
,
Griswold T
,
Vidyaprakash E
,
Im SB
,
Williams GM
,
Pouseele HA ,
Hise KB
,
Carleton HA
.
Microb Genom 2023 9 (5)
Cronobacter sakazakii Infections in Two Infants Linked to Powdered Infant Formula and Breast Pump Equipment - United States, 2021 and 2022.
Haston JC
,
Miko S
,
Cope JR
,
McKeel H
,
Walters C
,
Joseph LA
,
Griswold T
,
Katz LS
,
Andújar AA
,
Tourdot L , Rounds J , Vagnone P , Medus C , Harris J , Geist R , Neises D , Wiggington A ,
Smith T
,
Im MS
,
Wheeler C
,
Smith P
,
Carleton HA
,
Lee CC
.
MMWR Morb Mortal Wkly Rep 2023 72 (9) 223-226
Genome Sequences from a Reemergence of Vibrio cholerae in Haiti, 2022 Reveal Relatedness to Previously Circulating Strains.
Walters C
,
Chen J
,
Stroika S
,
Katz LS
,
Turnsek M
,
Compère V ,
Im MS
,
Gomez S
,
McCullough A
,
Landaverde C
,
Putney J
,
Caidi H
,
Folster J
,
Carleton HA
,
Boncy J ,
Lee CC
.
J Clin Microbiol 2023 61 (3) e0014223
Increased Multidrug-Resistant Salmonella enterica I Serotype 4,[5],12:i:- Infections Associated with Pork, United States, 2009-2018.
Plumb ID
,
Brown AC
,
Stokes EK
,
Chen JC
,
Carleton H
,
Tolar B
,
Sundararaman P
,
Saupe A ,
Payne DC
,
Shah HJ
,
Folster JP
,
Friedman CR
.
Emerg Infect Dis 2023 29 (2) 314-22
Molecular characterization of circulating Salmonella Typhi strains in an urban informal settlement in Kenya.
Ochieng C ,
Chen JC
,
Osita MP ,
Katz LS
,
Griswold T
,
Omballa V , Ng'eno E , Ouma A , Wamola N , Opiyo C , Achieng L ,
Munywoki PK
,
Hendriksen RS ,
Freeman M
,
Mikoleit M
,
Juma B
,
Bigogo G ,
Mintz E
,
Verani JR
,
Hunsperger E
,
Carleton HA
.
PLoS Negl Trop Dis 2022 16 (8) e0010704
The power, potential, benefits, and challenges of implementing high-throughput sequencing in food safety systems.
Imanian B , Donaghy J , Jackson T , Gummalla S , Ganesan B , Baker RC , Henderson M , Butler EK , Hong Y , Ring B , Thorp C , Khaksar R , Samadpour M , Lawless KA , MacLaren-Lee I ,
Carleton HA
,
Tian R , Zhang W , Wan J .
NPJ Sci Food 2022 6 (1) 35
Sequencing of Enteric Bacteria: Library Preparation Procedure Matters for Accurate Identification and Characterization.
Poates A
,
Truong J ,
Lindsey R
,
Griswold T
,
Williams-Newkirk AJ
,
Carleton H
,
Trees E
.
Foodborne Pathog Dis 2022 19 (8) 569-578
PulseNet International Survey on the Implementation of Whole Genome Sequencing in Low and Middle-Income Countries for Foodborne Disease Surveillance.
Davedow T ,
Carleton H
,
Kubota K , Palm D ,
Schroeder M
,
Gerner-Smidt P
,
Al-Jardani A , Chinen I , Kam KM , Smith AM , Nadon C .
Foodborne Pathog Dis 2022 19 (5) 332-340
The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.
Stevens EL ,
Carleton HA
,
Beal J , Tillman GE ,
Lindsey RL
,
Lauer AC
,
Pightling A , Jarvis KG , Ottesen A , Ramachandran P , Hintz L ,
Katz LS
,
Folster JP
,
Whichard JM
,
Trees E
,
Timme RE , McDermott P , Wolpert B , Bazaco M , Zhao S , Lindley S ,
Bruce BB
,
Griffin PM
,
Brown E , Allard M , Tallent S , Irvin K , Hoffmann M ,
Wise M
,
Tauxe R
,
Gerner-Smidt P
,
Simmons M , Kissler B , Defibaugh-Chavez S , Klimke W , Agarwala R , Lindsay J , Cook K , Austerman SR , Goldman D ,
McGarry S
,
Hale KR , Dessai U , Musser SM ,
Braden C
.
J Food Prot 2022 85 (5) 755-772
Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks.
Wagner DD
,
Carleton HA
,
Trees E ,
Katz LS
.
PeerJ 2021 9 e12446
Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises.
Timme RE , Lafon PC , Balkey M , Adams JK , Wagner D ,
Carleton H
,
Strain E , Hoffmann M ,
Sabol A
,
Rand H ,
Lindsey R
,
Sheehan D , Baugher JD , Trees E .
Sci Data 2020 7 (1) 402
Comparison of Molecular Subtyping and Antimicrobial Resistance Detection Methods Used in a Large Multi-State Outbreak of Extensively Drug-Resistant Campylobacter jejuni Infections Linked to Pet Store Puppies.
Joseph LA
,
Francois Watkins LK
,
Chen J
,
Tagg KA
,
Bennett C
,
Caidi H
,
Folster JP
,
Laughlin ME
,
Koski L
,
Silver R
,
Stevenson L
,
Robertson S
,
Pruckler J
,
Nichols M
,
Pouseele H ,
Carleton HA
,
Basler C
,
Friedman CR
,
Geissler A
,
Hise KB
,
Aubert RD
.
J Clin Microbiol 2020 58 (10)
Pathogen Genomics in Public Health.
Armstrong GL
,
MacCannell DR
,
Taylor J ,
Carleton HA
,
Neuhaus EB
,
Bradbury RS
,
Posey JE
,
Gwinn M
.
N Engl J Med 2019 381 (26) 2569-2580
Implications of Mobile Genetic Elements for Salmonella enterica Single-Nucleotide Polymorphism Subtyping and Source Tracking Investigations.
Li S , Zhang S , Baert L , Jagadeesan B , Ngom-Bru C ,
Griswold T
,
Katz LS
,
Carleton HA
,
Deng X .
Appl Environ Microbiol 2019 85 (24)
PulseNet and the Changing Paradigm of Laboratory-Based Surveillance for Foodborne Diseases.
Kubota KA , Wolfgang WJ , Baker DJ , Boxrud D , Turner L , Trees E ,
Carleton HA
,
Gerner-Smidt P
.
Public Health Rep 2019 134 22s-28s
Multidrug-Resistant Salmonella I 4,[5],12:i:- and Salmonella Infantis Infections Linked to Whole Roasted Pigs from a Single Slaughter and Processing Facility.
Kawakami V
,
Bottichio L
,
Lloyd J ,
Carleton H
,
Leeper M
,
Olson G , Li Z , Kissler B ,
Angelo KM
,
Whitlock L
,
Sinatra J , Defibaugh-Chavez S ,
Bicknese A
,
Kay M ,
Wise ME
,
Basler C
,
Duchin J .
J Food Prot 2019 82 (9) 1615-1624
Interpretation of Whole-Genome Sequencing for Enteric Disease Surveillance and Outbreak Investigation.
Besser JM
,
Carleton HA
,
Trees E
,
Stroika SG
,
Hise K
,
Wise M
,
Gerner-Smidt P
.
Foodborne Pathog Dis 2019 16 (7) 504-512
Metagenomic Approaches for Public Health Surveillance of Foodborne Infections: Opportunities and Challenges.
Carleton HA
,
Besser J
,
Williams-Newkirk AJ
,
Huang A
,
Trees E
,
Gerner-Smidt P
.
Foodborne Pathog Dis 2019 16 (7) 474-479
Multistate outbreak of Salmonella Paratyphi B variant L(+) tartrate(+) and Salmonella Weltevreden infections linked to imported frozen raw tuna: USA, March-July 2015.
Hassan R
,
Tecle S , Adcock B , Kellis M , Weiss J , Saupe A , Sorenson A , Klos R , Blankenship J , Blessington T ,
Whitlock L
,
Carleton HA
,
Concepcion-Acevedo J
,
Tolar B
,
Wise M
,
Neil KP
.
Epidemiol Infect 2018 146 (11) 1-7
Notes from the Field: Investigation of an Outbreak of Salmonella Paratyphi B Variant L(+) tartrate + (Java) Associated with Ball Python Exposure - United States, 2017.
Krishnasamy V
,
Stevenson L
,
Koski L
,
Kellis M , Schroeder B , Sundararajan M , Ladd-Wilson S , Sampsel A , Mannell M ,
Classon A
,
Wagner D
,
Hise K
,
Carleton H
,
Trees E
,
Schlater L , Lantz K ,
Nichols M
.
MMWR Morb Mortal Wkly Rep 2018 67 (19) 562-563
An Assessment of Different Genomic Approaches for Inferring Phylogeny of Listeria monocytogenes.
Henri C , Leekitcharoenphon P ,
Carleton HA
,
Radomski N , Kaas RS , Mariet JF , Felten A , Aarestrup FM ,
Gerner Smidt P
,
Roussel S , Guillier L , Mistou MY , Hendriksen RS .
Front Microbiol 2017 8 2351
Next-Generation Sequencing Technologies and their Application to the Study and Control of Bacterial Infections.
Besser J
,
Carleton HA
,
Gerner-Smidt P
,
Lindsey RL
,
Trees E
.
Clin Microbiol Infect 2017 24 (4) 335-341
Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance.
Timme RE , Rand H , Shumway M ,
Trees EK
,
Simmons M , Agarwala R , Davis S , Tillman GE , Defibaugh-Chavez S ,
Carleton HA
,
Klimke WA ,
Katz LS
.
PeerJ 2017 2017 (10) e3893
PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance.
Nadon C , Van Walle I ,
Gerner-Smidt P
,
Campos J , Chinen I ,
Concepcion-Acevedo J
,
Gilpin B , Smith AM , Man Kam K , Perez E ,
Trees E
,
Kubota K , Takkinen J , Nielsen EM ,
Carleton H
.
Euro Surveill 2017 22 (23)
Whole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes associated with an outbreak linked to cheese, United States, 2013.
Chen Y , Luo Y ,
Carleton H
,
Timme R , Melka D , Muruvanda T , Wang C , Kastanis G ,
Katz LS
,
Turner L , Fritzinger A , Moore T , Stones R , Blankenship J , Salter M , Parish M , Hammack TS , Evans PS ,
Tarr CL
,
Allard MW , Strain EA , Brown EW .
Appl Environ Microbiol 2017 83 (15)
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Page last reviewed:
Feb 1, 2024
Content source:
Public Health Genomics Branch in the Division of Blood Disorders and Public Health Genomics
,
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