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CDC-Authored Genomics and Precision Health Publications Database|Home|Public Health Genomics and Precision Health Knowledge Base (PHGKB)

CDC-Authored Genomics and Precision Health Publications Database


Last data update: Dec 02, 2024. (Total: 6432 publications)
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Records 1-30 (of 39 Records)
Query Trace: Campo D[original query]
Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry.
Dimitrova Z , Campo DS , Ramachandran S , Vaughan G , Ganova-Raeva L , Lin Y , Forbi JC , Xia G , Skums P , Pearlman B , Khudyakov Y .
In Silico Biol 2011 11 183-92
Hepatitis C virus antigenic convergence.
Campo DS , Dimitrova Z , Yokosawa J , Hoang D , Perez NO , Ramachandran S , Khudyakov Y .
Sci Rep 2012 2 267
Polyvalent immunization elicits a synergistic broadly neutralizing immune response to hypervariable region 1 variants of hepatitis C virus
Mosa AI , Campo DS , Khudyakov Y , AbouHaidar MG , Gehring AJ , Zahoor A , Ball JK , Urbanowicz RA , Feld JJ .
Proc Natl Acad Sci U S A 2023 120 (24) e2220294120
A Novel Information-Theory-Based Genetic Distance That Approximates Phenotypic Differences.
Campo DS , Mosa A , Khudyakov Y .
J Comput Biol 2023 30 (4) 420-431 type
Retrospective molecular investigation of Mayaro and Oropouche viruses at the human-animal interface in West-central Brazil, 2016-2018.
Dias HG , de Lima RC , Barbosa LS , Souza TMA , Badolato-Correa J , Maia LMS , Ferreira RDS , Neves Nads , Costa MCS , Martins LR , Souza EM , Carvalho MDS , Araujo-Oliveira A , Marques WA , Sabino-Santos G , Marques MS , Macedo GC , Nantes WAG , Santos FM , Netto CC , Morgado TO , Bianchini MA , Correa SHR , Almeida JR , Campos LP , Souza IM , Barreto WTG , Porfírio G , Alencar JAF , Herrera HM , Shlessarenko RD , Cunha RVD , Azeredo EL , Salyer SJ , Komar N , Pauvolid-Corrêa A , Dos Santos FB .
PLoS One 2022 17 (11) e0277612 type
Polymorphic Molecular Signatures in Variable Regions of the Plasmodium falciparum var2csa DBL3x Domain Are Associated with Virulence in Placental Malaria.
Talundzic E , Scott S , Owino SO , Campo DS , Lucchi NW , Udhayakumar V , Moore JM , Peterson DS .
Pathogens 2022 11 (5) type
Dynamics of Triatoma infestans populations in the Paraguayan Chaco: Population genetic analysis of household reinfestation following vector control.
RojasdeArias A , Messenger LA , Rolon M , Vega MC , Acosta N , Villalba C , Marcet PL .
PLoS One 2022 17 (2) e0263465
Primary case inference in viral outbreaks through analysis of intra-host variant population.
Gussler JW , Campo DS , Dimitrova Z , Skums P , Khudyakov Y .
BMC Bioinformatics 2022 23 (1) 62 type
Mapping SARS-CoV-2 Antibody Epitopes in COVID-19 Patients with a Multi-Coronavirus Protein Microarray.
Camerini D , Randall AZ , Trappl-Kimmons K , Oberai A , Hung C , Edgar J , Shandling A , Huynh V , Teng AA , Hermanson G , Pablo JV , Stumpf MM , Lester SN , Harcourt J , Tamin A , Rasheed M , Thornburg NJ , Satheshkumar PS , Liang X , Kennedy RB , Yee A , Townsend M , Campo JJ .
Microbiol Spectr 2021 9 (2) e0141621
Convex hulls in hamming space enable efficient search for similarity and clustering of genomic sequences.
Campo DS , Khudyakov Y .
BMC Bioinformatics 2020 21 482
Accurate spatiotemporal mapping of drug overdose deaths by machine learning of drug-related web-searches.
Campo DS , Gussler JW , Sue A , Skums P , Khudyakov Y .
PLoS One 2020 15 (12) e0243622
High prevalence of Hepatitis C Virus infection among people who use crack cocaine in an important international drug trafficking route in Central-West Region Brazil.
Castro VOL , Kamili S , Forbi JC , Stabile AC , da Silva EF , do Valle Leone de Oliveira SM , de Carvalho PRT , Puga MAM , Tanaka TSO , do Lago BV , Ibanhes ML , Araujo A , Tejada-Strop A , Lin Y , Xia GL , Sue A , Teles SA , Motta-Castro ARC .
Infect Genet Evol 2020 85 104488 type
Machine learning can accelerate discovery and application of cyber-molecular cancer diagnostics.
Campo DS , Khudyakov Y .
J Med Artif Intell 2020 3 (7)
Entropy of mitochondrial DNA circulating in blood is associated with hepatocellular carcinoma.
Campo DS , Nayak V , Srinivasamoorthy G , Khudyakov Y .
BMC Med Genomics 2019 12 74
Fast estimation of genetic relatedness between members of heterogeneous populations of closely related genomic variants.
Tsyvina V , Campo DS , Sims S , Zelikovsky A , Khudyakov Y , Skums P .
BMC Bioinformatics 2018 19 360 type
Automated quality control for a molecular surveillance system.
Sims S , Longmire AG , Campo DS , Ramachandran S , Medrzycki M , Ganova-Raeva L , Lin Y , Sue A , Thai H , Zelikovsky A , Khudyakov Y .
BMC Bioinformatics 2018 19 358 type
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.
Skums P , Zelikovsky A , Singh R , Gussler W , Dimitrova Z , Knyazev S , Mandric I , Ramachandran S , Campo D , Jha D , Bunimovich L , Costenbader E , Sexton C , O'Connor S , Xia GL , Khudyakov Y .
Bioinformatics 2018 34 (1) 163-170 type
Transmissibility of intra-host hepatitis C virus variants.
Campo DS , Zhang J , Ramachandran S , Khudyakov Y .
BMC Genomics 2017 18 881
GHOST: global hepatitis outbreak and surveillance technology.
Longmire AG , Sims S , Rytsareva I , Campo DS , Skums P , Dimitrova Z , Ramachandran S , Medrzycki M , Thai H , Ganova-Raeva L , Lin Y , Punkova LT , Sue A , Mirabito M , Wang S , Tracy R , Bolet V , Sukalac T , Lynberg C , Khudyakov Y .
BMC Genomics 2017 18 916
Efficient detection of viral transmissions with Next-Generation Sequencing data.
Rytsareva I , Campo DS , Zheng Y , Sims S , Thankachan SV , Tetik C , Chirag J , Chockalingam SP , Sue A , Aluru S , Khudyakov Y .
BMC Genomics 2017 18 372
Molecular epidemiology of hepatitis B virus infection in Tanzania.
Forbi JC , Dillon M , Purdy MA , Drammeh BS , Tejada-Strop A , McGovern D , Xia GL , Lin Y , Ganova-Raeva LM , Campo DS , Thai H , Vaughan G , Haule D , Kutaga RP , Basavaraju SV , Kamili S , Khudyakov YE .
J Gen Virol 2017 98 (5) 1048-1057
Increased Mitochondrial Genetic Diversity in Persons Infected With Hepatitis C Virus.
Campo DS , Roh HJ , Pearlman BL , Fierer DS , Ramachandran S , Vaughan G , Hinds A , Dimitrova Z , Skums P , Khudyakov Y .
Cell Mol Gastroenterol Hepatol 2016 2 (5) 676-684
Next-Generation Sequencing Reveals Frequent Opportunities for Exposure to Hepatitis C Virus in Ghana.
Forbi JC , Layden JE , Phillips RO , Mora N , Xia GL , Campo DS , Purdy MA , Dimitrova ZE , Owusu DO , Punkova LT , Skums P , Owusu-Ofori S , Sarfo FS , Vaughan G , Roh H , Opare-Sem OK , Cooper RS , Khudyakov YE .
PLoS One 2015 10 (12) e0145530
Accurate genetic detection of hepatitis C virus transmissions in outbreak settings.
Campo DS , Xia GL , Dimitrova Z , Lin Y , Forbi JC , Ganova-Raeva L , Punkova L , Ramachandran S , Thai H , Skums P , Sims S , Rytsareva I , Vaughan G , Roh HJ , Purdy MA , Sue A , Khudyakov Y .
J Infect Dis 2015 213 (6) 957-65
Good laboratory practice for clinical next-generation sequencing informatics pipelines.
Gargis AS , Kalman L , Bick DP , da Silva C , Dimmock DP , Funke BH , Gowrisankar S , Hegde MR , Kulkarni S , Mason CE , Nagarajan R , Voelkerding KV , Worthey EA , Aziz N , Barnes J , Bennett SF , Bisht H , Church DM , Dimitrova Z , Gargis SR , Hafez N , Hambuch T , Hyland FC , Luna RA , MacCannell D , Mann T , McCluskey MR , McDaniel TK , Ganova-Raeva LM , Rehm HL , Reid J , Campo DS , Resnick RB , Ridge PG , Salit ML , Skums P , Wong LJ , Zehnbauer BA , Zook JM , Lubin IM .
Nat Biotechnol 2015 33 (7) 689-93
Cryptic Hepatitis B and E in Patients With Acute Hepatitis of Unknown Etiology.
Ganova-Raeva L , Punkova L , Campo DS , Dimitrova Z , Skums P , Vu NH , Dat DT , Dalton HR , Khudyakov Y .
J Infect Dis 2015 212 (12) 1962-9
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Skums P , Artyomenko A , Glebova O , Ramachandran S , Mandoiu I , Campo DS , Dimitrova Z , Zelikovsky A , Khudyakov Y .
Bioinformatics 2014 31 (5) 682-90
Recent population expansions of hepatitis B virus in the United States.
Ramachandran S , Purdy MA , Xia GL , Campo DS , Dimitrova ZE , Teshale EH , Teo CG , Khudyakov YE .
J Virol 2014 88 (24) 13971-80
Next-generation sequencing reveals large connected networks of intra-host HCV variants.
Campo DS , Dimitrova Z , Yamasaki L , Skums P , Lau DT , Vaughan G , Forbi JC , Teo CG , Khudyakov Y .
BMC Genomics 2014 15 Suppl 5 S4
Intra-host diversity and evolution of hepatitis C virus endemic to Côte d'Ivoire.
Forbi JC , Campo DS , Purdy MA , Dimitrova ZE , Skums P , Xia GL , Punkova LT , Ganova-Raeva LM , Vaughan G , Ben-Ayed Y , Switzer WM , Khudyakov YE .
J Med Virol 2014 86 (5) 765-71
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