CDC-Authored Genomics and Precision Health Publications Database

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Last data update: Nov 04, 2024. (Total: 6390 publications)

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Records 1-27 (of 27 Records)

Query Trace: Barratt J[original query]
Sources and prevalence of Cyclospora cayetanensis in southeastern U.S. Growing environments Kahler AM , Hofstetter J , Arrowood M , Peterson A , Jacobson D , Barratt J , Luiz Biscaia Ribeiro da Silva A , Rodrigues C , Mattioli MC . J Food Prot 2024 100309
Evaluation of the increased genetic resolution and utility for source tracking of a recently developed method for genotyping cyclospora cayetanensis Leonard SR , Mammel MK , Almeria S , Gebru ST , Jacobson DK , Peterson AC , Barratt JLN , Musser SM . Microorganisms 2024 12 (5)
Genetic characterization and description of Leishmania (Leishmania) ellisi sp. nov.: a new human-infecting species from the USA Sapp SGH , Low R , Nine G , Nascimento FS , Qvarnstrom Y , Barratt JLN . Parasitol Res 2023 123 (1) 52
Simultaneous targeted amplicon deep sequencing and library preparation for a time and cost-effective universal parasite diagnostic sequencing approach Gondard M , Lane M , Barratt J , Talundzic E , Qvarnstrom Y . Parasitol Res 2023 122 (12) 3243-3256
An improved framework for detecting discrete epidemiologically meaningful partitions in hierarchically clustered genetic data Jacobson DK , Low R , Plucinski MM , Barratt JLN . Bioinform Adv 2023 3 (1) vbad118
Retrospective evaluation of an integrated molecular-epidemiological approach to cyclosporiasis outbreak investigations - United States, 2021 Ahart L , Jacobson D , Rice M , Richins T , Peterson A , Zheng Y , Barratt J , Cama V , Qvarnstrom Y , Montgomery S , Straily A . Epidemiol Infect 2023 151 e131
Cyclospora cayetanensis comprises at least three species that cause human cyclosporiasis Barratt JLN , Shen J , Houghton K , Richins T , Sapp SGH , Cama V , Arrowood MJ , Straily A , Qvarnstrom Y . Parasitology 2023 150 (3) 269-285
Optimizing hierarchical tree dissection parameters using historic epidemiologic data as 'ground truth'. Jacobson D , Barratt J . PLoS One 2023 18 (2) e0282154
Genetic characterization of Strongyloides fuelleborni infecting free-roaming African vervets (Chlorocebus aethiops sabaeus) on the Caribbean island of St. Kitts. Richins T , Sapp SGH , Ketzis JK , Willingham AL , Mukaratirwa S , Qvarnstrom Y , Barratt JLN . Int J Parasitol Parasites Wildl 2023 20 153-161
Epidemiologic utility of a framework for partition number selection when dissecting hierarchically clustered genetic data evaluated on the intestinal parasite Cyclospora cayetanensis. Barratt JLN , Plucinski MM . Am J Epidemiol 2023 192 (5) 772-781
Application of a universal parasite diagnostic test to biological specimens collected from animals. Lane M , Kashani M , Barratt JL , Qvarnstrom Y , Yabsley MJ , Garrett KB , Bradbury RS . Int J Parasitol Parasites Wildl 2023 20 20-30
Evaluation of various distance computation methods for construction of haplotype-based phylogenies from large MLST dataset. Jacobson D , Zheng Y , Plucinski MM , Qvarnstrom Y , Barratt JLN . Mol Phylogenet Evol 2022 177 107608
Assessing an Adaptation of the Universal Parasite Diagnostic Assay for Bloodborne Parasites in a US State Public Health Laboratory. Clemons B , Barratt J , Lane M , Qvarnstrom Y , Teal AE , Zayas G , Madison-Antenucci S . Am J Trop Med Hyg 2021 106 (2) 671-677
Genotyping Cyclospora cayetanensis from multiple outbreak clusters with an emphasis on a cluster linked to bagged salad mix - United States, 2020. Barratt J , Ahart L , Rice M , Houghton K , Richins T , Cama V , Arrowood M , Qvarnstrom Y , Straily A . J Infect Dis 2021 225 (12) 2176-2180
Investigation of US Cyclospora cayetanensis outbreaks in 2019 and evaluation of an improved Cyclospora genotyping system against 2019 cyclosporiasis outbreak clusters. Barratt J , Houghton K , Richins T , Straily A , Threlkel R , Bera B , Kenneally J , Clemons B , Madison-Antenucci S , Cebelinski E , Whitney BM , Kreil KR , Cama V , Arrowood MJ , Qvarnstrom Y . Epidemiol Infect 2021 149 1-39
Nonparametric Binary Classification to Distinguish Closely Related versus Unrelated P. Falciparum Parasites. Plucinski MM , Barratt JLN . Am J Trop Med Hyg 2021 104 (5) 1830-1835
Machine learning and applications in microbiology. Goodswen SJ , Barratt JLN , Kennedy PJ , Kaufer A , Calarco L , Ellis JT . FEMS Microbiol Rev 2021 45 (5)
Sensitive universal detection of blood parasites by selective pathogen-DNA enrichment and deep amplicon sequencing. Flaherty BR , Barratt J , Lane M , Talundzic E , Bradbury RS . Microbiome 2021 9 (1) 1
Evaluation of an ensemble-based distance statistic for clustering MLST datasets using epidemiologically defined clusters of cyclosporiasis. Nascimento FS , Barratt J , Houghton K , Plucinski M , Kelley J , Casillas S , Bennett CC , Snider C , Tuladhar R , Zhang J , Clemons B , Madison-Antenucci S , Russell A , Cebelinski E , Haan J , Robinson T , Arrowood MJ , Talundzic E , Bradbury RS , Qvarnstrom Y . Epidemiol Infect 2020 148 e172
Malaria Risk and Prevention in Asian Migrants to Angola. Martins JF , Marques C , Nieto-Andrade B , Kelley J , Patel D , Nace D , Herman C , Barratt J , Ponce de Leon G , Talundzic E , Rogier E , Halsey ES , Plucinski MM . Am J Trop Med Hyg 2020 103 (5) 1918-1926
Machine learning-based analyses support the existence of species complexes for Strongyloides fuelleborni and Strongyloides stercoralis . Barratt JLN , Sapp SGH . Parasitology 2020 147 (11) 1-46
Development of a workflow for identification of nuclear genotyping markers for Cyclospora cayetanensis. Houghton KA , Lomsadze A , Park S , Nascimento FS , Barratt J , Arrowood MJ , VanRoey E , Talundzic E , Borodovsky M , Qvarnstrom Y . Parasite 2020 27 24
A global genotyping survey of Strongyloides stercoralis and Strongyloides fuelleborni using deep amplicon sequencing. Barratt JLN , Lane M , Talundzic E , Richins T , Robertson G , Formenti F , Pritt B , Verocai G , Nascimento de Souza J , Mato Soares N , Traub R , Buonfrate D , Bradbury RS . PLoS Negl Trop Dis 2019 13 (9) e0007609
Mitochondrial Junction Region as Genotyping Marker for Cyclospora cayetanensis. Nascimento FS , Barta JR , Whale J , Hofstetter JN , Casillas S , Barratt J , Talundzic E , Arrowood MJ , Qvarnstrom Y . Emerg Infect Dis 2019 25 (7) 1314-1319
Detection of classic and cryptic Strongyloides genotypesby deep amplicon sequencing: A preliminary survey of dog and human specimens collected from remote Australian communities. Beknazarova M , Barratt JLN , Bradbury RS , Lane M , Whiley H , Ross K . PLoS Negl Trop Dis 2019 13 (8) e0007241
Genotyping Genetically Heterogeneous Cyclospora cayetanensis Infections to Complement Epidemiological Case Linkage. Barratt JLN , Park S , Nascimento FS , Hofstetter J , Plucinski M , Casillas S , Bradbury RS , Arrowood MJ , Qvarnstrom Y , Talundzic E . Parasitology 2019 146 (10) 1-33
Restriction enzyme digestion of host DNA enhances universal detection of parasitic pathogens in blood via targeted amplicon deep sequencing. Flaherty BR , Talundzic E , Barratt J , Kines KJ , Olsen C , Lane M , Sheth M , Bradbury RS . Microbiome 2018 6 (1) 164