CDC-Authored Genomics and Precision Health Publications Database
Last data update: Feb 20, 2020. (Total: 2792 publications since 2011)
| Query Trace: all records[orginal query] |
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| First Case of High-Level Azithromycin Resistant Neisseria gonorrhoeae in North Carolina. Elizabeth L Palavecino, Abdullah Kilic, Matthew W Schmerer, Oana Dobre-Buonya, Cindy Toler, and Candice J McNeil Sexually transmitted diseases 2020 Feb |
| Molecular characterization and clinical outcomes of Candida auris infection: Single-center experience in Saudi Arabia. Reem S Almaghrabi, Rashed Albalawi, Maysoon Mutabagani, Edwin Atienza, Suliman Aljumaah, Lalitha Gade, Kaitlin Forsberg, Anastasia Litvintseva, and Sahar AlThawadi Mycoses 2020 Feb |
| Rickettsia felis identified in two fatal cases of acute meningoencephalitis. Arthur H P Mawuntu, Edison Johar, Riane Anggraeni, Feliana Feliana, Janno B B Bernadus, Dodi Safari, Frilasita A Yudhaputri, Rama Dhenni, Yora P Dewi, Cecilia Kato, Ann M Powers, Ronald Rosenberg, Amin Soebandrio, and Khin S A Myint PLoS neglected tropical diseases 2020 Feb (2) e0007893 |
| Multistate, population-based distributions of candidate vaccine targets, clonal complexes, and resistance features of invasive Group B Streptococci within the US: 2015-2017. Lesley McGee, Sopio Chochua, Zhongya Li, Saundra Mathis, Joy Rivers, Benjamin Metcalf, Alison Ryan, Nisha Alden, Monica M Farley, Lee H Harrison, Paula Snippes Vagnone, Ruth Lynfield, Chad Smelser, Alison Muse, Ann R Thomas, Stephanie Schrag, and Bernard W Beall Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2020 Feb |
| Outbreak of Listeriosis in South Africa Associated with Processed Meat. Juno Thomas, Nevashan Govender, Kerrigan M McCarthy, Linda K Erasmus, Timothy J Doyle, Mushal Allam, Arshad Ismail, Ntsieni Ramalwa, Phuti Sekwadi, Genevie Ntshoe, Andronica Shonhiwa, Vivien Essel, Nomsa Tau, Shannon Smouse, Hlengiwe M Ngomane, Bolele Disenyeng, Nicola A Page, Nelesh P Govender, Adriano G Duse, Rob Stewart, Teena Thomas, Deon Mahoney, Mathieu Tourdjman, Olivier Disson, Pierre Thouvenot, Mylène M Maury, Alexandre Leclercq, Marc Lecuit, Anthony M Smith, and Lucille H Blumberg The New England journal of medicine 2020 382(7) 632-643 |
| The forgotten exotic tapeworms: a review of uncommon zoonotic Cyclophyllidea. Sarah G H Sapp, and Richard S Bradbury Parasitology 2020 Jan 1-26 |
| Combining genomics and epidemiology to track mumps virus transmission in the United States. Shirlee Wohl, Hayden C Metsky, Stephen F Schaffner, Anne Piantadosi, Meagan Burns, Joseph A Lewnard, Bridget Chak, Lydia A Krasilnikova, Katherine J Siddle, Christian B Matranga, Bettina Bankamp, Scott Hennigan, Brandon Sabina, Elizabeth H Byrne, Rebecca J McNall, Rickey R Shah, James Qu, Daniel J Park, Soheyla Gharib, Susan Fitzgerald, Paul Barreira, Stephen Fleming, Susan Lett, Paul A Rota, Lawrence C Madoff, Nathan L Yozwiak, Bronwyn L MacInnis, Sandra Smole, Yonatan H Grad, and Pardis C Sabeti PLoS biology 2020 Feb (2) e3000611 |
| Absence of Evidence of Zika Virus Infection in Cord Blood and Urine from Newborns with Congenital Abnormalities, Indonesia. Nina Dwi Putri, Rama Dhenni, Setyo Handryastuti, Edison Johar, Chairin Nisa Ma'roef, Araniy Fadhilah, Adhi Teguh Perma Iskandar, Ari Prayitno, Mulya Rahma Karyanti, Hindra Irawan Satari, Niphidiah Jumiyanti, Yuni Yudha Aprilia, Ida Yus Sriyani, Yora Permata Dewi, Frilasita A Yudhaputri, Dodi Safari, Sri Rezeki Hadinegoro, Ronald Rosenberg, Ann M Powers, and Khin Saw Aye Myint The American journal of tropical medicine and hygiene 2020 Feb |
| Improving Screening Uptake among Breast Cancer Survivors and Their First-Degree Relatives at Elevated Risk to Breast Cancer: Results and Implications of a Randomized Study in the State of Georgia. Joseph Lipscomb, Cam Escoffery, Theresa W Gillespie, S Jane Henley, Robert A Smith, Toni Chociemski, Lyn Almon, Renjian Jiang, Xi Sheng, Michael Goodman, and Kevin C Ward International journal of environmental research and public health 2020 Feb 17(3) |
| Phylogenetic diversity of Mycobacterium tuberculosis in two geographically distinct locations in Botswana - The Kopanyo Study. Eleanor S Click, Alyssa Finlay, John E Oeltmann, Joyce Basotli, Chawangwa Modongo, Rosanna Boyd, Xiao Jun Wen, James Shepard, Patrick K Moonan, and Nicola Zetola Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2020 Feb 104232 |
| "Submergence" of Western equine encephalitis virus: Evidence of positive selection argues against genetic drift and fitness reductions. Nicholas A Bergren, Sherry Haller, Shannan L Rossi, Robert L Seymour, Jing Huang, Aaron L Miller, Richard A Bowen, Daniel A Hartman, Aaron C Brault, and Scott C Weaver PLoS pathogens 2020 Feb (2) e1008102 |
| Expanding US Laboratory Capacity for Neisseria gonorrhoeae Antimicrobial Susceptibility Testing and Whole Genome Sequencing through CDC's Antibiotic Resistance Laboratory Network. Ellen N Kersh, Cau D Pham, John R Papp, Robert Myers, Richard Steece, Grace Kubin, Romesh Gautom, Evelyn E Nash, Samera Sharpe, Kim M Gernert, Matthew Schmerer, Brian H Raphael, Tara Henning, Anne M Gaynor, Olusegun Soge, Karen Schlanger, Robert D Kirkcaldy, Sancta B St Cyr, Elizabeth A Torrone, Kyle Bernstein, Hillard Weinstock, and Journal of clinical microbiology 2020 Feb |
| Influenza A Virus Field Surveillance at a Swine-Human Interface. Benjamin L Rambo-Martin, Matthew W Keller, Malania M Wilson, Jacqueline M Nolting, Tavis K Anderson, Amy L Vincent, Ujwal R Bagal, Yunho Jang, Elizabeth B Neuhaus, C Todd Davis, Andrew S Bowman, David E Wentworth, and John R Barnes mSphere 2020 Feb (1) |
| A landscape of genomic alterations at the root of a near-untreatable tuberculosis epidemic. Marisa Klopper, Tim Hermanus Heupink, Grant Hill-Cawthorne, Elizabeth Maria Streicher, Anzaan Dippenaar, Margaretha de Vos, Abdallah Musa Abdallah, Jason Limberis, Matthias Merker, Scott Burns, Stefan Niemann, Keertan Dheda, James Posey, Arnab Pain, and Robin Mark Warren BMC medicine 2020 Feb (1) 24 |
| Phylodynamic Analysis Complements Partner Services by Identifying Acute and Unreported HIV Transmission. Ellsworth M Campbell, Anne Patala, Anupama Shankar, Jin-Fen Li, Jeffrey A Johnson, Emily Westheimer, Cynthia L Gay, Stephanie E Cohen, William M Switzer, and Philip J Peters Viruses 2020 Jan (2) |
| Using the Collaborative Requirements Development Methodology to Build Laboratory Capacity for Timely Diagnosis During the Zika Epidemic in Puerto Rico. Juneka H Rembert, Carlos S Zometa, Patrick W O'Carroll, Anabelle L Licier, Carol McPhillips-Tangum, and Piper M Hale Journal of public health management and practice : JPHMP 2020 Jan |
| Global update on the susceptibilities of human influenza viruses to neuraminidase inhibitors and the cap-dependent endonuclease inhibitor baloxavir, 2017-2018. Emi Takashita, Rod S Daniels, Seiichiro Fujisaki, Vicki Gregory, Larisa V Gubareva, Weiijuan Huang, Aeron C Hurt, Angie Lackenby, Ha T Nguyen, Dmitriy Pereyaslov, Merryn Roe, Magdi Samaan, Kanta Subbarao, Herman Tse, Dayan Wang, Hui-Ling Yen, Wenqing Zhang, and Adam Meijer Antiviral research 2020 Jan 104718 |
| Isoniazid- and Rifampin-Resistance Mutations Associated with Resistance to Second-line Drugs and with Sputum Culture Conversion. Eleanor S Click, Ekaterina Kurbatova, Heather Alexander, Tracy L Dalton, Michael P Chen, James E Posey, Julia J Ershova, and Peter Cegielski The Journal of infectious diseases 2020 Jan |
| Molecular Epidemiology of Norovirus Outbreaks in Argentina, 2013-2018. Juan I Degiuseppe, Leslie Barclay, Karina A Gomes, Veronica Costantini, Jan Vinjé, and Juan A Stupka Journal of medical virology 2020 Jan |
| Recommendations for the nomenclature of enteroviruses and rhinoviruses. P Simmonds, A E Gorbalenya, H Harvala, T Hovi, N J Knowles, A M Lindberg, M S Oberste, A C Palmenberg, G Reuter, T Skern, C Tapparel, K C Wolthers, P C Y Woo, and R Zell Archives of virology 2020 Jan |
| Quality control of multiplex antibody detection in samples from large-scale surveys: the example of malaria in Haiti. Lotus L van den Hoogen, Jacquelin Présumé, Ithamare Romilus, Gina Mondélus, Tamara Elismé, Nuno Sepúlveda, Gillian Stresman, Thomas Druetz, Ruth A Ashton, Vena Joseph, Thomas P Eisele, Karen E S Hamre, Michelle A Chang, Jean F Lemoine, Kevin K A Tetteh, Jacques Boncy, Alexandre Existe, Chris Drakeley, and Eric Rogier Scientific reports 2020 Jan 10(1) 1135 |
| An Isothermal, Multiplex Amplification Assay for Detection and Genotyping of Human Papillomaviruses in Formalin-Fixed, Paraffin-Embedded Tissues. Yi-Wei Tang, Lorena Lozano, Xin Chen, Troy D Querec, Nora Katabi, Antonio Moreno-Docón, Hongmei Wang, Daniel Fix, Louise de Brot, Tracy A McMillen, Ju-Yoon Yoon, Amparo Torroba, Youxiang Wang, Elizabeth R Unger, and Kay J Park The Journal of molecular diagnostics : JMD 2020 Jan |
| Temporal Changes in HIV Transmission Patterns among Young Men Who Have Sex with Men, United States, 2009-2016. Nivedha Panneer, Anne Marie France, Y Omar Whiteside, Tianchi Zhang, Joel O Wertheim, and Alexandra M Oster Journal of acquired immune deficiency syndromes (1999) 2020 Jan |
| Using the LN34 Pan-Lyssavirus Real-Time RT-PCR Assay for Rabies Diagnosis and Rapid Genetic Typing from Formalin-Fixed Human Brain Tissue. Rene Edgar Condori, Michael Niezgoda, Griselda Lopez, Carmen Acosta Matos, Elinna Diaz Mateo, Crystal Gigante, Claire Hartloge, Altagracia Pereira Filpo, Joseph Haim, Panayampalli Subbian Satheshkumar, Brett Petersen, Ryan Wallace, Victoria Olson, and Yu Li Viruses 2020 Jan (1) |
| Further Evidence of Inadequate Quality in Lateral Flow Devices Commercially Offered for the Diagnosis of Rabies. Antonia Klein, Anna Fahrion, Stefan Finke, Marina Eyngor, Shiri Novak, Boris Yakobson, Ernest Ngoepe, Baby Phahladira, Claude Sabeta, Paola De Benedictis, Morgane Gourlaouen, Lillian A Orciari, Pamela A Yager, Crystal M Gigante, M Kimberly Knowles, Christine Fehlner-Gardiner, Alexandre Servat, Florence Cliquet, Denise Marston, Lorraine M McElhinney, Trudy Johnson, Anthony R Fooks, Thomas Müller, and Conrad M Freuling Tropical medicine and infectious disease 2020 Jan (1) |
| Rapid Nanopore Whole-Genome Sequencing for Anthrax Emergency Preparedness. Heather P McLaughlin, Julia V Bugrysheva, Andrew B Conley, Christopher A Gulvik, Blake Cherney, Cari B Kolton, Chung K Marston, Elke Saile, Erin Swaney, David Lonsway, Amy S Gargis, Thiphasone Kongphet-Tran, Christine Lascols, Pierre Michel, Julie Villanueva, Alex R Hoffmaster, Jay E Gee, and David Sue Emerging infectious diseases 2020 Feb (2) 358-361 |
| Oropharyngeal microbiome of a college population following a meningococcal disease outbreak. Adam C Retchless, Cécilia B Kretz, Lorraine D Rodriguez-Rivera, Alexander Chen, Heidi M Soeters, Melissa J Whaley, and Xin Wang Scientific reports 2020 Jan (1) 632 |
| Biomarker profile in stable Fontan patients. Anita Saraf, Christine De Staercke, Ian Everitt, Alice Haouzi, Yi-An Ko, Staci Jennings, Jonathan H Kim, Fred H Rodriguez, Andreas P Kalogeropoulos, Arshed Quyyumi, and Wendy Book International journal of cardiology 2020 Jan |
| Geographical distribution of Anopheles stephensi in eastern Ethiopia. Meshesha Balkew, Peter Mumba, Dereje Dengela, Gedeon Yohannes, Dejene Getachew, Solomon Yared, Sheleme Chibsa, Matthew Murphy, Kristen George, Karen Lopez, Daniel Janies, Sae Hee Choi, Joseph Spear, Seth R Irish, and Tamar E Carter Parasites & vectors 2020 Jan 13(1) 35 |
| Low levels of HIV-1 drug resistance mutations in patients who achieved viral re-suppression without regimen switch: a retrospective study. Chika K Onwuamah, Jonathan Okpokwu, Rosemary Audu, Godwin Imade, Seema T Meloni, Azuka Okwuraiwe, Philippe Chebu, Adesola Z Musa, Beth Chaplin, Ibrahim Dalhatu, Oche Agbaji, Jay Samuels, Oliver Ezechi, Mukhtar Ahmed, Georgina Odaibo, David O Olaleye, Prosper Okonkwo, Babatunde Lawal Salako, Elliot Raizes, Chunfu Yang, Phyllis J Kanki, and Emmanuel O Idigbe BMC microbiology 2020 Jan (1) 17 |
| Effectiveness and Safety of Extending Intrauterine Device Duration: A Systematic Review. Angeline J Ti, Andrea H Roe, Katherine C Whitehouse, Ruben A Smith, Mary E Gaffield, and Kathryn M Curtis American journal of obstetrics and gynecology 2020 Jan |
| Composition-Function Analysis of HDL Subpopulations: Influence of Lipid Composition on Particle Functionality. Katrin Niisuke, Zsuzsanna Kuklenyik, Katalin V Horvath, Michael S Gardner, Christopher A Toth, and Bela F Asztalos Journal of lipid research 2020 Jan |
| Genetic characterization of influenza A(H3N2) viruses circulating in coastal Kenya, 2009-2017. D Collins Owuor, Joyce M Ngoi, James R Otieno, Grieven P Otieno, Festus M Nyasimi, Joyce U Nyiro, Charles N Agoti, Sandra S Chaves, and D James Nokes Influenza and other respiratory viruses 2020 Jan |
| Heritage and Genealogy Travel Health Concerns in the Era of In-home DNA Testing. Kristina M Angelo, Jennifer Breiman, Henry M Wu, Jeffrey Nemhauser, and Allison T Walker Journal of travel medicine 2020 Jan |
| Binding of the von Willebrand Factor A Domain of Capillary Morphogenesis Protein 2 to Anthrax Protective Antigen Vaccine Reduces Immunogenicity in Mice. Fabiana Freire Mendes de Oliveira, Sireesha Mamillapalli, Srinivas Gonti, Robert N Brey, Han Li, Jarad Schiffer, Arturo Casadevall, and James G Bann mSphere 2020 Jan 5(1) |
| Conservation of the name Aeromonas eucrenophila over the name Aeromonas punctata for the organism based on type stain NCMB 74 T and universally defined as ' Aeromonas DNA hybridization group 6'. J Jim Farmer, and Barry Holmes International journal of systematic and evolutionary microbiology 2020 Jan |
| Reverse Transcription-Polymerase Chain Reaction Testing on Filter Paper-Dried Serum for Laboratory-Based Dengue Surveillance-American Samoa, 2018. Emily J Curren, Aifili John Tufa, W Thane Hancock, Brad J Biggerstaff, June S Vaifanua-Leo, Catherine A Montalbo, Tyler M Sharp, Marc Fischer, Susan L Hills, and Carolyn V Gould The American journal of tropical medicine and hygiene 2020 Jan |
| Evaluating accuracy of microsatellite markers for classification of recurrent infections during routine monitoring of anti-malarial drug efficacy: A computer modelling approach. Sam Jones, Mateusz Plucinski, Katherine Kay, Eva Maria Hodel, and Ian M Hastings Antimicrobial agents and chemotherapy 2020 Jan |
| Successful isolation of Treponema pallidum strains from patients' cryopreserved ulcer exudate using the rabbit model. Lara E Pereira, Samantha S Katz, Yongcheng Sun, Patrick Mills, Willie Taylor, Patricia Atkins, Charles M Thurlow, Kai-Hua Chi, Damien Danavall, Nicholas Cook, Tamanna Ahmed, Alyssa Debra, Susan Philip, Stephanie Cohen, Kimberly A Workowski, Ellen Kersh, Yetunde Fakile, Cheng Y Chen, and Allan Pillay PloS one 2020 (1) e0227769 |
| Evaluation of phylogenetic methods for inferring the direction of HIV transmission: HPTN 052. Yinfeng Zhang, Chris Wymant, Oliver Laeyendecker, M Kathryn Grabowski, Matthew Hall, Sarah Hudelson, Estelle Piwowar-Manning, Marybeth McCauley, Theresa Gamble, Mina C Hosseinipour, Nagalingeswaran Kumarasamy, James G Hakim, Johnstone Kumwenda, Lisa A Mills, Breno R Santos, Beatriz Grinsztejn, Jose H Pilotto, Suwat Chariyalertsak, Joseph Makhema, Ying Q Chen, Myron S Cohen, Christophe Fraser, and Susan H Eshleman Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2020 Jan |
| Optimization and qualification of a functional anti-drug antibody assay for HIV-1 bnAbs. Michael S Seaman, Miroslawa Bilska, Fadi Ghantous, Amanda Eaton, Celia C LaBranche, Kelli Greene, Hongmei Gao, Joshua A Weiner, Margaret E Ackerman, David A Garber, Yvonne J Rosenberg, Marcella Sarzotti-Kelsoe, and David C Montefiori Journal of immunological methods 2020 Jan 112736 |
| Homotypic and heterotypic protection and risk of re-infection following natural norovirus infection in a highly endemic setting. Preeti Chhabra, Saba Rouhani, Hannah Browne, Pablo Peñataro Yori, Mery Siguas Salas, Maribel Paredes Olortegui, Lawrence H Moulton, Margaret N Kosek, and Jan Vinjé Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2020 Jan |
| Analysis of Global Collection of Group A Streptococcus Genomes Reveals that the Majority Encode a Trio of M and M-Like Proteins. Hannah R Frost, Mark R Davies, Valérie Delforge, Dalila Lakhloufi, Martina Sanderson-Smith, Velusamy Srinivasan, Andrew C Steer, Mark J Walker, Bernard Beall, Anne Botteaux, and Pierre R Smeesters mSphere 2020 Jan 5(1) |
| Neurodevelopmental Abnormalities Associated With In Utero Zika Virus Infection in Infants and Children-The Unfolding Story. Margaret A Honein, Kate R Woodworth, and Christopher J Gregory JAMA pediatrics 2020 Jan |
| Viruses in the Built Environment (VIBE) meeting report. Aaron J Prussin, Jessica A Belser, Werner Bischoff, Scott T Kelley, Kaisen Lin, William G Lindsley, Jean Pierre Nshimyimana, Michael Schuit, Zhenyu Wu, Kyle Bibby, and Linsey C Marr Microbiome 2020 Jan 8(1) 1 |
| Population-level human secretor status is associated with genogroup 2 type 4 norovirus predominance. Cory J Arrouzet, Karen Ellis, Anita Kambhampati, Yingxi Chen, Molly Steele, and Ben Lopman The Journal of infectious diseases 2020 Jan |
| Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies. Robert M Waterhouse, Sergey Aganezov, Yoann Anselmetti, Jiyoung Lee, Livio Ruzzante, Maarten J M F Reijnders, Romain Feron, Sèverine Bérard, Phillip George, Matthew W Hahn, Paul I Howell, Maryam Kamali, Sergey Koren, Daniel Lawson, Gareth Maslen, Ashley Peery, Adam M Phillippy, Maria V Sharakhova, Eric Tannier, Maria F Unger, Simo V Zhang, Max A Alekseyev, Nora J Besansky, Cedric Chauve, Scott J Emrich, and Igor V Sharakhov BMC biology 2020 Jan (1) 1 |
| Awareness of breast cancer risk related to a positive family history and alcohol consumption among women aged 15-44 years in United States. Jaya S Khushalani, Jin Qin, Donatus U Ekwueme, and Arica White Preventive medicine reports 2020 Mar 17101029 |
| Zika Virus Surveillance at the Human-Animal Interface in West-Central Brazil, 2017-2018. Alex Pauvolid-Corrêa, Helver Gonçalves Dias, Laura Marina Siqueira Maia, Grasiela Porfírio, Thais Oliveira Morgado, Gilberto Sabino-Santos, Paula Helena Santa Rita, Wanessa Teixeira Gomes Barreto, Gabriel Carvalho de Macedo, Jaire Marinho Torres, Wesley Arruda Gimenes Nantes, Filipe Martins Santos, William Oliveira de Assis, Andreza Castro Rucco, Rafael Mamoru Dos Santos Yui, João Bosco Vilela Campos, Renato Rodrigues Leandro E Silva, Raquel da Silva Ferreira, Nilvanei Aparecido da Silva Neves, Michell Charlles de Souza Costa, Leticia Ramos Martins, Emerson Marques de Souza, Michellen Dos Santos Carvalho, Marina Gonçalves Lima, Fernanda de Cássia Gonçalves Alves, Luiz Humberto Guimarães Riquelme-Junior, Luan Luiz Batista Figueiró, Matheus Fernandes Gomes de Santana, Luiz Gustavo Rodrigues Oliveira Santos, Samara Serra Medeiros, Larissa Lopes Seino, Emily Hime Miranda, José Henrique Rezende Linhares, Vanessa de Oliveira Santos, Stephanie Almeida da Silva, Kelly Araújo Lúcio, Viviane Silva Gomes, Alexandre de Araújo Oliveira, Julia Dos Santos Silva, William de Almeida Marques, Marcio Schafer Marques, José Junior França de Barros, Letícia Campos, Dinair Couto-Lima, Claudia Coutinho Netto, Christine Strüssmann, Nicholas Panella, Emily Hannon, Barbara Cristina de Macedo, Júlia Ramos de Almeida, Karen Ramos Ribeiro, Maria Carolina Barros de Castro, Larissa Pratta Campos, Ana Paula Rosa Dos Santos, Isabelle Marino de Souza, Mateus de Assis Bianchini, Sandra Helena Ramiro Correa, Renato Ordones Baptista Luz, Ananda Dos Santos Vieira, Luzia Maria de Oliveira Pinto, Elzinandes Azeredo, Luiz Tadeu Moraes Figueiredo, Jeronimo Augusto Fonseca Alencar, Sheila Maria Barbosa de Lima, Heitor Miraglia Herrera, Renata Dezengrini Shlessarenko, Flavia Barreto Dos Santos, Ana Maria Bispo de Filippis, Stephanie Salyer, Joel Montgomery, and Nicholas Komar Viruses 2019 Dec (12) |
| Pathogen Genomics in Public Health. Gregory L Armstrong, Duncan R MacCannell, Jill Taylor, Heather A Carleton, Elizabeth B Neuhaus, Richard S Bradbury, James E Posey, and Marta Gwinn The New England journal of medicine 2019 Dec (26) 2569-2580 |
| Bloodstream Infections with a Novel Nontuberculous Mycobacterium Involving 52 Outpatient Oncology Clinic Patients - Arkansas, 2018. Sarah M Labuda, Kelley Garner, Michael Cima, Heather Moulton-Meissner, Alison Laufer Halpin, Nadege Charles-Toney, Peter Yu, Erin Bolton, Reid Pierce, Matthew B Crist, Danica Gomes, Paige Gable, Gillian McAllister, Adrian Lawsin, Hollis Houston, Naveen Patil, J Gary Wheeler, Robert Bradsher, Keyur Vyas, and Dirk Haselow Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Nov |
| Determining the molecular drivers of species-specific interferon-stimulated gene product 15 interactions with nairovirus ovarian tumor domain proteases. John V Dzimianski, Florine E M Scholte, Isabelle L Williams, Caroline Langley, Brendan T Freitas, Jessica R Spengler, Éric Bergeron, and Scott D Pegan PloS one 2019 14(12) e0226415 |
| Corrigendum: Whole Genome Sequencing: Bridging One-Health Surveillance of Foodborne Diseases. Peter Gerner-Smidt, John Besser, Jeniffer Concepción-Acevedo, Jason P Folster, Jasmine Huffman, Lavin A Joseph, Zuzana Kucerova, Megin C Nichols, Colin A Schwensohn, and Beth Tolar Frontiers in public health 2019 7365 |
| Identification and Characterization of Shigella with Decreased Susceptibility to Azithromycin in the United States, 2005 to 2014. Davina Campbell, Anna Bowen, Amelia Bhatnagar, Andre McCullough, Julian Grass, Jessica Chen, and Jason P Folster Journal of global antimicrobial resistance 2019 Dec |
| Landscape of gene expression variation of natural isolates of Cryptococcus neoformans in response to biologically relevant stresses. Chen-Hsin Yu, Yuan Chen, Christopher A Desjardins, Jennifer L Tenor, Dena L Toffaletti, Charles Giamberardino, Anastasia Litvintseva, John R Perfect, and Christina A Cuomo Microbial genomics 2019 Dec |
| Francisella opportunistica sp. nov., isolated from human blood and cerebrospinal fluid. Elizabeth A Dietrich, Luke C Kingry, Kiersten J Kugeler, Craig Levy, Hayley Yaglom, John W Young, Paul S Mead, and Jeannine M Petersen International journal of systematic and evolutionary microbiology 2019 Dec |
| High levels of pretreatment and acquired HIV drug resistance in Nicaragua: results from the first nationally representative survey, 2016. Amalia Girón-Callejas, Claudia García-Morales, Ricardo Mendizabal-Burastero, Matilde Román, Daniela Tapia-Trejo, Marissa Pérez-García, Verónica S Quiroz-Morales, Sandra I Juárez, Giovanni Ravasi, Carlos Vargas, René Gutiérrez, Luz Romero, Aleyda Solórzano, Edgar Sajquim, Sanny Northbrook, Santiago Ávila-Ríos, and Gustavo Reyes-Terán Journal of the International AIDS Society 2019 Dec 22(12) e25429 |
| Invasive Nontypeable Haemophilus influenzae Infection Among Adults With HIV in Metropolitan Atlanta, Georgia, 2008-2018. Lauren F Collins, Fiona P Havers, Amy Tunali, Stephanie Thomas, Julie A Clennon, Zanthia Wiley, Melissa Tobin-D'Angelo, Tonia Parrott, Timothy D Read, Sarah W Satola, Robert A Petit, and Monica M Farley JAMA 2019 12 (24) 2399-2410 |
| Natural selection favoring more transmissible HIV detected in United States molecular transmission network. Joel O Wertheim, Alexandra M Oster, William M Switzer, Chenhua Zhang, Nivedha Panneer, Ellsworth Campbell, Neeraja Saduvala, Jeffrey A Johnson, and Walid Heneine Nature communications 2019 Dec (1) 5788 |
| Ebola Virus Disease Outbreak - Democratic Republic of the Congo, August 2018-November 2019. Aaron Aruna, Placide Mbala, Luigi Minikulu, Daniel Mukadi, Dorothée Bulemfu, Franck Edidi, Junior Bulabula, Gaston Tshapenda, Justus Nsio, Richard Kitenge, Gisèle Mbuyi, Celestin Mwanzembe, John Kombe, Léopold Lubula, Jean Christophe Shako, Mathias Mossoko, Felix Mulangu, Annie Mutombo, Emilia Sana, Yannick Tutu, Laetycia Kabange, Jonathan Makengo, Fortunat Tshibinkufua, Steve Ahuka-Mundeke, Jean-Jacques Muyembe, Ebola Response Cdc, and MMWR. Morbidity and mortality weekly report 2019 Dec 68(50) 1162-1165 |
| Laboratory Analysis of an Outbreak of Candida auris in New York from 2016 to 2018-Impact and Lessons Learned. YanChun Zhu, Brittany O'Brien, Lynn Leach, Alexandra Clark, Marian Bates, Eleanor Adams, Belinda Ostrowsky, Monica Quinn, Elizabeth Dufort, Karen Southwick, Richard Erazo, Valerie B Haley, Coralie Bucher, Vishnu Chaturvedi, Ronald J Limberger, Debra Blog, Emily Lutterloh, and Sudha Chaturvedi Journal of clinical microbiology 2019 Dec |
| Japanese encephalitis vaccine-specific envelope protein E138K mutation does not attenuate virulence of West Nile virus. Jaclyn A Kaiser, Huanle Luo, Steven G Widen, Thomas G Wood, Claire Y-H Huang, Tian Wang, and Alan D T Barrett NPJ vaccines 2019 50 |
| Measurement error, microcephaly prevalence and implications for Zika: an analysis of Uruguay perinatal data. Emily W Harville, Pierre M Buekens, Maria Luisa Cafferata, Suzanne Gilboa, Giselle Tomasso, and Van Tong Archives of disease in childhood 2019 Dec |
| Molecular Surveillance for Polymorphisms Associated with artemisinin-based combination therapie Resistance in Plasmodium falciparum Isolates Collected in the State of Roraima, Brazil. Naomi W Lucchi, Rispah Abdallah, Jaime Louzada, Venkatachalam Udhayakumar, and Joseli Oliveira-Ferreira The American journal of tropical medicine and hygiene 2019 Dec |
| Isolation and phylogenomic analysis of Buffalopox virus from Human and Buffaloes in India. Pragya D Yadav, Matthew R Mauldin, Dimpal A Nyayanit, César G Albariño, Prasad Sarkale, Anita Shete, Lisa W Guerrero, Yoshinori Nakazawa, Stuart T Nichol, and Devendra T Mourya Virus research 2019 Dec 197836 |
| An exploration of smokeless tobacco product nucleic acids: a combined metagenome and metatranscriptome analysis. R E Tyx, A J Rivera, L M Keong, and S B Stanfill Applied microbiology and biotechnology 2020 Jan 104(2) 751-763 |
| Antifungal triazole posaconazole targets an early stage of the parechovirus A3 life cycle. Eric Rhoden, Terry Fei Fan Ng, Ray Campagnoli, W Allan Nix, Jennifer Konopka-Anstadt, Rangaraj Selvarangan, Laurence Briesach, M Steven Oberste, and William C Weldon Antimicrobial agents and chemotherapy 2019 Dec |
| Shiga Toxin-Producing E. coli Infections Associated with Romaine Lettuce - United States, 2018. Lyndsay Bottichio, Amelia Keaton, Deepam Thomas, Tara Fulton, Amanda Tiffany, Anna Frick, Mia Mattioli, Amy Kahler, Jennifer Murphy, Mark Otto, Adiam Tesfai, Angela Fields, Kelly Kline, Jennifer Fiddner, Jeffrey Higa, Amber Barnes, Francine Arroyo, Annabelle Salvatierra, April Holland, Wendy Taylor, June Nash, Bozena M Morawski, Sarah Correll, Rachel Hinnenkamp, Jeffrey Havens, Kane Patel, Morgan N Schroeder, Lori Gladney, Haley Martin, Laura Whitlock, Natasha Dowell, Corinne Newhart, Louise Francois Watkins, Vincent Hill, Susan Lance, Stic Harris, Matthew Wise, Ian Williams, Colin Basler, and Laura Gieraltowski Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Dec |
| DNA-Based Population Screening: Potential Suitability and Important Knowledge Gaps. Michael F Murray, James P Evans, and Muin J Khoury JAMA 2019 Dec |
| Genetic Characterization of Frijoles and Chilibre Species Complex Viruses (Genus Phlebovirus ; Family Phenuiviridae ) and Three Unclassified New World Phleboviruses. Holly R Hughes, Brandy J Russell, and Amy J Lambert The American journal of tropical medicine and hygiene 2019 Dec |
| Rousette Bat Dendritic Cells Overcome Marburg Virus-Mediated Antiviral Responses by Upregulation of Interferon-Related Genes While Downregulating Proinflammatory Disease Mediators. Joseph Prescott, Jonathan C Guito, Jessica R Spengler, Catherine E Arnold, Amy J Schuh, Brian R Amman, Tara K Sealy, Lisa W Guerrero, Gustavo F Palacios, Mariano Sanchez-Lockhart, Cesar G Albariño, and Jonathan S Towner mSphere 2019 4(6) |
| A mosaic tetracycline resistance gene tet(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa. Stephanie W Lo, Rebecca A Gladstone, Andries J van Tonder, Mignon du Plessis, Jennifer E Cornick, Paulina A Hawkins, Shabir A Madhi, Susan A Nzenze, Rama Kandasamy, K L Ravikumar, Naima Elmdaghri, Brenda Kwambana-Adams, Samanta Cristine Grassi Almeida, Anna Skoczynska, Ekaterina Egorova, Leonid Titov, Samir K Saha, Metka Paragi, Dean B Everett, Martin Antonio, Keith P Klugman, Yuan Li, Benjamin J Metcalf, Bernard Beall, Lesley McGee, Robert F Breiman, Stephen D Bentley, Anne von Gottberg, and The Journal of antimicrobial chemotherapy 2019 Dec |
| Field sampling of indoor bioaerosols. Jennie Cox, Hamza Mbareche, William G Lindsley, and Caroline Duchaine Aerosol science and technology : the journal of the American Association for Aerosol Research 2019 2019 |
| Multiplex malaria antigen detection by bead-based assay and molecular confirmation by PCR shows no evidence of Pfhrp2 and Pfhrp3 deletion in Haiti. Camelia Herman, Curtis S Huber, Sophie Jones, Laura Steinhardt, Mateusz M Plucinski, Jean F Lemoine, Michelle Chang, John W Barnwell, Venkatachalam Udhayakumar, and Eric Rogier Malaria journal 2019 Nov (1) 380 |
| Stability of the vaginal, oral, and gut microbiota across pregnancy among African American women: the effect of socioeconomic status and antibiotic exposure. Anne L Dunlop, Anna K Knight, Glen A Satten, Anya J Cutler, Michelle L Wright, Rebecca M Mitchell, Timothy D Read, Jennifer Mulle, Vicki S Hertzberg, Cherie C Hill, Alicia K Smith, and Elizabeth J Corwin PeerJ 2019 e8004 |
| Population Structure and Genetic Diversity among Isolates of Coccidioides posadasii in Venezuela and Surrounding Regions. Marcus M Teixeira, Primavera Alvarado, Chandler C Roe, George R Thompson, José S L Patané, Jason W Sahl, Paul Keim, John N Galgiani, Anastasia P Litvintseva, Daniel R Matute, and Bridget M Barker mBio 2019 Nov (6) |
| What Is Going on With the Genus Dermacentor? Hybridizations, Introgressions, Oh My! Jerome Goddard, Michelle Allerdice, J Santos Portugal, Gail M Moraru, Christopher D Paddock, and Jonas King Journal of medical entomology 2019 Nov |
| Molecular detection of respiratory pathogens among children aged younger than 5 years hospitalized with febrile acute respiratory infections: A prospective hospital-based observational study in Niamey, Niger. Adamou Lagare, Sani Ousmane, Ibrahim Dan Dano, Bassira Issaka, Idi Issa, Halima Boubacar Mainassara, Jean Testa, Stefano Tempia, and Saidou Mamadou Health science reports 2019 Oct 2(11) e137 |
| HIV-1 genetic diversity to estimate time of infection and infer adherence to preexposure prophylaxis. Olivia D Council, Susan Ruone, Philip A Mock, George Khalil, Amy Martin, Marcel E Curlin, Janet M McNicholl, Walid Heneine, Wanna Leelawiwat, Kachit Choopanya, Suphak Vanichseni, Thitima Cherdtrakulkiat, Rapeepan Anekvorapong, Michael Martin, and José Gerardo García-Lerma AIDS (London, England) 2019 Dec (15) 2299-2307 |
| Gut carriage of antimicrobial resistance genes among young children in urban Maputo, Mozambique: Associations with enteric pathogen carriage and environmental risk factors. David Berendes, Jackie Knee, Trent Sumner, Drew Capone, Amanda Lai, Anna Wood, Siddhartha Patel, Rassul Nalá, Oliver Cumming, and Joe Brown PloS one 2019 14(11) e0225464 |
| A novel avian isolate of hepatitis E virus from Pakistan. Tahir Iqbal, Umer Rashid, Muhammad Idrees, Amber Afroz, Saleem Kamili, and Michael A Purdy Virology journal 2019 Nov 16(1) 142 |
| Conserved Patterns of Symmetric Inversion in the Genome Evolution of Bordetella Respiratory Pathogens. Michael R Weigand, Yanhui Peng, Dhwani Batra, Mark Burroughs, Jamie K Davis, Kristen Knipe, Vladimir N Loparev, Taccara Johnson, Phalasy Juieng, Lori A Rowe, Mili Sheth, Kevin Tang, Yvette Unoarumhi, Margaret M Williams, and M Lucia Tondella mSystems 2019 Nov (6) |
| Molecular Confirmation of Rickettsia parkeri in Amblyomma ovale Ticks, Veracruz, Mexico. Sokani Sánchez-Montes, Gerardo G Ballados-González, Alejandra Hernández-Velasco, Héctor M Zazueta-Islas, Marlene Solis-Cortés, Haydee Miranda-Ortiz, Julio C Canseco-Méndez, Edith A Fernández-Figueroa, Pablo Colunga-Salas, Andrés M López-Pérez, Jesús Delgado-de la Mora, Jesús D Licona-Enriquez, David Delgado-de la Mora, Sandor E Karpathy, Christopher D Paddock, and Claudia Rangel-Escareño Emerging infectious diseases 2019 25(12) 2315-2317 |
| Short communication: Multistate outbreak of Listeria monocytogenes infections retrospectively linked to unpasteurized milk using whole-genome sequencing. Megin Nichols, Amanda Conrad, Laura Whitlock, Steven Stroika, Errol Strain, Andre Weltman, Lydia Johnson, Jamie DeMent, Roshan Reporter, and Ian Williams Journal of dairy science 2019 Nov |
| Opioid Use Fueling HIV Transmission in an Urban Setting: An Outbreak of HIV Infection Among People Who Inject Drugs-Massachusetts, 2015-2018. Charles Alpren, Erica L Dawson, Betsey John, Kevin Cranston, Nivedha Panneer, H Dawn Fukuda, Kathleen Roosevelt, R Monina Klevens, Janice Bryant, Philip J Peters, Sheryl B Lyss, William Switzer, Amanda Burrage, Ashley Murray, Christine Agnew-Brune, Tracy Stiles, Paul McClung, Ellsworth M Campbell, Courtney Breen, Liisa M Randall, Sharoda Dasgupta, Shauna Onofrey, Danae Bixler, Kischa Hampton, Jenifer Leaf Jaeger, Katherine K Hsu, William Adih, Barry Callis, Linda R Goldman, Susie P Danner, Hongwei Jia, Matthew Tumpney, Amy Board, Catherine Brown, Alfred DeMaria, and Kate Buchacz American journal of public health 2019 Nov e1-e8 |
| Temporal and Genotypic Associations of Sporadic Norovirus Gastroenteritis and Reported Norovirus Outbreaks in Middle Tennessee, 2012-2016. Meghana P Parikh, Simon Vandekar, Christina Moore, Linda Thomas, Nathan Britt, Bhinnata Piya, Laura S Stewart, Einas Batarseh, Lubna Hamdan, Steffany J Cavallo, Ashley M Swing, Katie N Garman, Lisha Constantine-Renna, James Chappell, Daniel C Payne, Jan Vinjé, Aron J Hall, John R Dunn, and Natasha Halasa Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Nov |
| International Society of Cardiovascular Infectious Diseases Guidelines for the Diagnosis, Treatment and Prevention of Disseminated Mycobacterium chimaera Infection Following Cardiac Surgery with Cardiopulmonary Bypass. Barbara Hasse, Margaret Hannan, Peter M Keller, Florian P Maurer, Rami Sommerstein, Dominik Mertz, Dirk Wagner, Nuria Fernández-Hidalgo, Jim Nomura, Vinicio Manfrin, Dominique Bettex, Antonio Hernandez Conte, Emanuele Durante-Mangoni, Tommy Hing-Cheung Tang, Rhonda L Stuart, Jens Lundgren, Steve Gordon, M Claire Jarashow, Peter W Schreiber, Stefan Niemann, Thomas A Kohl, Charles Daley, Andrew J Stewardson, Cynthia J Whitener, Kiran Perkins, Diamantis Plachouras, Theresa Lamagni, Meera Chand, Tomas Freiberger, Sandrine Zweifel, Peter Sander, Bettina Schulthess, James Scriven, Hugo Sax, Jakko van Ingen, Carlos A Mestres, Daniel Diekema, Barbara A Brown-Elliott, Richard J Wallace, Larry M Baddour, Jose M Miro, Bruno Hoen, , The Journal of hospital infection 2019 Nov |
| An open challenge to advance probabilistic forecasting for dengue epidemics. Michael A Johansson, Karyn M Apfeldorf, Scott Dobson, Jason Devita, Anna L Buczak, Benjamin Baugher, Linda J Moniz, Thomas Bagley, Steven M Babin, Erhan Guven, Teresa K Yamana, Jeffrey Shaman, Terry Moschou, Nick Lothian, Aaron Lane, Grant Osborne, Gao Jiang, Logan C Brooks, David C Farrow, Sangwon Hyun, Ryan J Tibshirani, Roni Rosenfeld, Justin Lessler, Nicholas G Reich, Derek A T Cummings, Stephen A Lauer, Sean M Moore, Hannah E Clapham, Rachel Lowe, Trevor C Bailey, Markel García-Díez, Marilia Sá Carvalho, Xavier Rodó, Tridip Sardar, Richard Paul, Evan L Ray, Krzysztof Sakrejda, Alexandria C Brown, Xi Meng, Osonde Osoba, Raffaele Vardavas, David Manheim, Melinda Moore, Dhananjai M Rao, Travis C Porco, Sarah Ackley, Fengchen Liu, Lee Worden, Matteo Convertino, Yang Liu, Abraham Reddy, Eloy Ortiz, Jorge Rivero, Humberto Brito, Alicia Juarrero, Leah R Johnson, Robert B Gramacy, Jeremy M Cohen, Erin A Mordecai, Courtney C Murdock, Jason R Rohr, Sadie J Ryan, Anna M Stewart-Ibarra, Daniel P Weikel, Antarpreet Jutla, Rakibul Khan, Marissa Poultney, Rita R Colwell, Brenda Rivera-García, Christopher M Barker, Jesse E Bell, Matthew Biggerstaff, David Swerdlow, Luis Mier-Y-Teran-Romero, Brett M Forshey, Juli Trtanj, Jason Asher, Matt Clay, Harold S Margolis, Andrew M Hebbeler, Dylan George, and Jean-Paul Chretien Proceedings of the National Academy of Sciences of the United States of America 2019 Nov |
| Genomic Epidemiology as a Public Health Tool to Combat Mosquito-Borne Virus Outbreaks. S Pollett, J R Fauver, Irina Maljkovic Berry, M Melendrez, A Morrison, L D Gillis, M A Johansson, R G Jarman, and N D Grubaugh The Journal of infectious diseases 2019 Nov |
| Oxidative stress pathway gene transcription after bovine respiratory syncytial virus infection in vitro and ex vivo. Amelia R Hofstetter, and Randy E Sacco Veterinary immunology and immunopathology 2019 Oct 219109956 |
| Flying, phones and flu: Anonymized call records suggest that Keflavik International Airport introduced pandemic H1N1 into Iceland in 2009. Nishant Kishore, Rebecca Mitchell, Timothy L Lash, Carrie Reed, Leon Danon, Guðrún Sigmundsdóttir, and Ymir Vigfusson Influenza and other respiratory viruses 2019 Nov |
| Ensuring the Life-Span Benefits of Newborn Screening. Alex R Kemper, Coleen A Boyle, Jeffrey P Brosco, and Scott D Grosse Pediatrics 2019 Nov |
| Unraveling oxidative stress response in the cestode parasite Echinococcus granulosus. Martín Cancela, Jéssica A Paes, Hercules Moura, John R Barr, Arnaldo Zaha, and Henrique B Ferreira Scientific reports 2019 Nov 9(1) 15876 |
| Implementation of the US Department of Health and Human Services Zika Specimen Repository and Its Effect on Zika Diagnostic Test Development, 2016. Marla Petway, Laura Anderson, Rosemary Humes, Stephanie Sincock, Wendi Kuhnert-Tallman, Joseph Miller, and Rodney L Wallace Public health reports (Washington, D.C. : 1974) (2_suppl) 53S-57S |
| PulseNet and the Changing Paradigm of Laboratory-Based Surveillance for Foodborne Diseases. Kristy A Kubota, William J Wolfgang, Deborah J Baker, David Boxrud, Lauren Turner, Eija Trees, Heather A Carleton, and Peter Gerner-Smidt Public health reports (Washington, D.C. : 1974) (2_suppl) 22S-28S |
| Recurrent herpes zoster in the Shingles Prevention Study: Are second episodes caused by the same varicella-zoster virus strain? Ruth Harbecke, Nancy J Jensen, Daniel P Depledge, Gary R Johnson, Mark E Ashbaugh, D Scott Schmid, Judith Breuer, Myron J Levin, and Michael N Oxman Vaccine 2019 Oct |
| Nearly Complete Genome Sequence of an Echovirus 30 Strain from a Cluster of Aseptic Meningitis Cases in California, September 2017. Chao-Yang Pan, Thalia Huynh, Tasha Padilla, Alice Chen, Terry Fei Fan Ng, Rachel L Marine, Christina J Castro, W Allan Nix, and Debra A Wadford Microbiology resource announcements 2019 Oct (44) |
| Genome Sequence of a Salmonella enterica subsp. enterica Serovar Corvallis Strain Isolated from Human Blood. Emily L Mccutchen, Madeline Galac, Curtis Kapsak, Steven H Hinrichs, Peter C Iwen, and Baha Abdalhamid Microbiology resource announcements 2019 Oct 8(44) |
| Burden of viral gastroenteritis in children living in rural China: population-based surveillance. Jin-Xia Wang, Hong-Lu Zhou, Zhao-Jun Mo, Song-Mei Wang, Zhi-Yong Hao, Yue Li, Shan-Shan Zhen, Can-Jing Zhang, Xin-Jiang Zhang, Jing-Chen Ma, Chao Qiu, Gan Zhao, Baoming Jiang, Xi Jiang, Rong-Cheng Li, Yu-Liang Zhao, and Xuan-Yi Wang International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 2019 Oct |
| Toward a Global Genomic Epidemiology of Meningococcal Disease. Adam C Retchless, LeAnne M Fox, Martin C J Maiden, Vincent Smith, Lee H Harrison, Linda Glennie, Odile B Harrison, and Xin Wang The Journal of infectious diseases 2019 Oct 220(Supplement_4) S266-S273 |
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