CDC-Authored Genomics and Precision Health Publications Database
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Last data update: Oct 10, 2019. (Total: 2661 publications since 2011)
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| FluChip-8G Insight: HA and NA subtyping of potentially pandemic influenza A viruses in a single assay. Evan Toth, Erica D Dawson, Amber W Taylor, Robert S Stoughton, Rebecca H Blair, James E Johnson, Amelia Slinskey, Ryan Fessler, Catherine B Smith, Sarah Talbot, and Kathy Rowlen Influenza and other respiratory viruses 2019 Oct |
| Genomic characterization of Haemophilus influenzae: a focus on the capsule locus. Caelin C Potts, Nadav Topaz, Lorraine D Rodriguez-Rivera, Fang Hu, How-Yi Chang, Melissa J Whaley, Susanna Schmink, Adam C Retchless, Alexander Chen, Edward Ramos, Gregory H Doho, and Xin Wang BMC genomics 2019 Oct 20(1) 733 |
| Safety and immunogenicity of a multivalent HIV vaccine comprising envelope protein with either DNA or NYVAC vectors (HVTN 096): a phase 1b, double-blind, placebo-controlled trial. Giuseppe Pantaleo, Holly Janes, Shelly Karuna, Shannon Grant, G Laissa Ouedraogo, Mary Allen, Georgia D Tomaras, Nicole Frahm, David C Montefiori, Guido Ferrari, Song Ding, Carter Lee, Merlin L Robb, Mariano Esteban, Ralf Wagner, Pierre-Alexandre Bart, Nils Rettby, M Juliana McElrath, Peter B Gilbert, James G Kublin, Lawrence Corey, and The lancet. HIV 2019 Oct |
| Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach. Rene S Hendriksen, Oksana Lukjancenko, Patrick Munk, Mathis H Hjelmsø, Jennifer R Verani, Eric Ng'eno, Godfrey Bigogo, Samuel Kiplangat, Traoré Oumar, Lasse Bergmark, Timo Röder, John C Neatherlin, Onyango Clayton, Tine Hald, Susanne Karlsmose, Sünje J Pamp, Barry Fields, Joel M Montgomery, and Frank M Aarestrup PloS one 2019 14(10) e0222531 |
| Descriptive epidemiology of rubella disease and associated virus strains in uganda. Phionah Tushabe, Josephine Bwogi, Emily Abernathy, Molly Birungi, James P Eliku, Ronald Seguya, Henry Bukenya, Prossy Namuwulya, Proscovia Kakooza, Suganthi Suppiah, Theopista Kabaliisa, Mayi Tibanagwa, Immaculate Ampaire, Annet Kisakye, Andrew Bakainaga, Charles R Byabamazima, Joseph P Icenogle, and Barnabas Bakamutumaho Journal of medical virology 2019 Oct |
| Pathology and Telepathology Methods in the Child Health and Mortality Prevention Surveillance Network. Roosecelis B Martines, Jana M Ritter, Joy Gary, Wun-Ju Shieh, Jaume Ordi, Martin Hale, Carla Carrilho, Mamudo Ismail, Cheick Boudadari Traore, Benjamin Esiaba Ndibile, Solomon Sava, Farida Arjuman, Mohammed Kamal, Mohammad Mosiur Rahman, Dianna M Blau, and Sherif R Zaki Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Oct 69(Supplement_4) S322-S332 |
| Development and Implementation of Multiplex TaqMan Array Cards for Specimen Testing at Child Health and Mortality Prevention Surveillance Site Laboratories. Maureen H Diaz, Jessica L Waller, M Jordan Theodore, Nishi Patel, Bernard J Wolff, Alvaro J Benitez, Timothy Morris, Pratima L Raghunathan, Robert F Breiman, Cynthia G Whitney, Dianna M Blau, and Jonas M Winchell Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Oct 69(Supplement_4) S311-S321 |
| Potential of Minimally Invasive Tissue Sampling for Attributing Specific Causes of Childhood Deaths in South Africa: A Pilot, Epidemiological Study. Richard Chawana, Vicky Baillie, Alane Izu, Fatima Solomon, Quique Bassat, Dianna M Blau, Robert F Breiman, Martin Hale, Eric R Houpt, Sanjay G Lala, Roosecelis B Martines, Azwifarwi Mathunjwa, Susan Nzenze, Jayani Pathirana, Karen L Petersen, Pratima L Raghunathan, Jana M Ritter, Jeannette Wadula, Sherif R Zaki, and Shabir A Madhi Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Oct 69(Supplement_4) S361-S373 |
| An Observational Pilot Study Evaluating the Utility of Minimally Invasive Tissue Sampling to Determine the Cause of Stillbirths in South African Women. Shabir A Madhi, Jayani Pathirana, Vicky Baillie, Clare Cutland, Yasmin Adam, Alane Izu, Quique Bassat, Dianna M Blau, Robert F Breiman, Martin Hale, Siobhan Johnstone, Roosecelis B Martines, Azwifarwi Mathunjwa, Susan Nzenze, Jaume Ordi, Pratima L Raghunathan, Jana M Ritter, Fatima Solomon, Jeannette Wadula, Sherif R Zaki, and Richard Chawana Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Oct 69(Supplement_4) S342-S350 |
| Isolation and growth characterization of novel full length and deletion mutant human MERS-CoV strains from clinical specimens collected during 2015. Azaibi Tamin, Krista Queen, Clinton R Paden, Xiaoyan Lu, Erica Andres, Senthilkumar K Sakthivel, Yan Li, Ying Tao, Jing Zhang, Shifaq Kamili, Abdullah M Assiri, Ali Alshareef, Taghreed A Alaifan, Asmaa M Altamimi, Hani Jokhdar, John T Watson, Susan I Gerber, Suxiang Tong, and Natalie J Thornburg The Journal of general virology 2019 Oct |
| Lassa virus circulating in Liberia: a retrospective genomic characterisation. Michael R Wiley, Lawrence Fakoli, Andrew G Letizia, Stephen R Welch, Jason T Ladner, Karla Prieto, Daniel Reyes, Nicole Espy, Joseph A Chitty, Catherine B Pratt, Nicholas Di Paola, Fahn Taweh, Desmond Williams, Jon Saindon, William G Davis, Ketan Patel, Mitchell Holland, Daniel Negrón, Ute Ströher, Stuart T Nichol, Shanmuga Sozhamannan, Pierre E Rollin, John Dogba, Tolbert Nyenswah, Fatorma Bolay, César G Albariño, Mosoka Fallah, and Gustavo Palacios The Lancet. Infectious diseases 2019 Oct |
| IL-36? is elevated in cervicovaginal epithelial cells in women with bacterial vaginosis and in vitro after infection with microbes associated with bacterial vaginosis. Jameson Gardner, Pawel Laniewski, Anna Knight, Lisa B Haddad, Alison Swaims-Kohlmeier, and Melissa Herbst-Kralovetz The Journal of infectious diseases 2019 Oct |
| A systematic review and evaluation of Zika virus forecasting and prediction research during a public health emergency of international concern. Pei-Ying Kobres, Jean-Paul Chretien, Michael A Johansson, Jeffrey J Morgan, Pai-Yei Whung, Harshini Mukundan, Sara Y Del Valle, Brett M Forshey, Talia M Quandelacy, Matthew Biggerstaff, Cecile Viboud, and Simon Pollett PLoS neglected tropical diseases 2019 Oct (10) e0007451 |
| Onsite investigation at a mail-order hatchery following a multistate Salmonella illness outbreak linked to live poultry-United States, 2018. Scott A Robertson, Jennifer L Sidge, Lia Koski, Margaret C Hardy, Lauren Stevenson, Kimberly Signs, Mary Grace Stobierski, Sally Bidol, Danielle Donovan, Marty Soehnlen, Kelly Jones, Sheri Robeson, Adeline Hambley, Lisa Stefanovsky, Joshua Brandenburg, Kelley Hise, Beth Tolar, Megin C Nichols, and Colin Basler Poultry science 2019 Oct |
| Janibacter species with evidence of genomic polymorphism isolated from resected heart valve in a patient with aortic stenosis. Lile Malania, Ying Bai, Kamil Khanipov, Marika Tsereteli, Mikheil Metreveli, David Tsereteli, Ketevan Sidamonidze, Paata Imnadze, Yuriy Fofanov, and Michael Kosoy Infectious disease reports 2019 Sep (2) 8132 |
| IL-36? Is a Key Regulator of Neutrophil Infiltration in the Vaginal Microenvironment and Limits Neuroinvasion in Genital HSV-2 Infection. Jameson K Gardner, Alison Swaims-Kohlmeier, and Melissa M Herbst-Kralovetz Journal of immunology (Baltimore, Md. : 1950) 2019 Oct |
| Bloodmeal, Host Selection, and Genetic Admixture Analyses of Culex pipiens Complex (Diptera: Culicidae) Mosquitoes in Chicago, IL. Linda Kothera, John-Paul Mutebi, Joan L Kenney, Kali Saxton-Shaw, Michael P Ward, and Harry M Savage Journal of medical entomology 2019 Oct |
| Invasive disease potential of Streptococcus pneumoniae serotypes before and after 10-valent pneumococcal conjugate vaccine introduction in a rural area, southern Mozambique. Sérgio Massora, Fernanda C Lessa, Benild Moiane, Fabiana C Pimenta, Hélio Mucavele, Alberto Chaúque, Anélsio Cossa, Jennifer R Verani, Nelson Tembe, Maria da Gloria Carvalho, Carmen Muñoz-Almagro, and Betuel Sigaúque Vaccine 2019 Sep |
| The First Two Cases of Candida ? auris in The Netherlands. Erik H Vogelzang, Annemarie J L Weersink, Rosa van Mansfeld, Nancy A Chow, Jacques F Meis, and Karin van Dijk Journal of fungi (Basel, Switzerland) 2019 Sep 5(4) |
| ICTV Virus Taxonomy Profile: Caliciviridae . Jan Vinjé, Mary K Estes, Pedro Esteves, Kim Y Green, Kazuhiko Katayama, Nick J Knowles, Yvan L'Homme, Vito Martella, Harry Vennema, Peter A White, and Ictv Report Consortium The Journal of general virology 2019 Oct |
| Identification of Gram negative non-fermentative bacteria: How hard can it be? Toni Whistler, Ornuma Sangwichian, Possawat Jorakate, Pongpun Sawatwong, Uraiwan Surin, Barameht Piralam, Somsak Thamthitiwat, Chidchanok Promkong, and Leonard Peruski PLoS neglected tropical diseases 2019 Sep (9) e0007729 |
| Trisomy 13 and 18-Prevalence and mortality-A multi-registry population based analysis. Nitin Goel, Joan K Morris, David Tucker, Hermien E K De Walle, Marian K Bakker, Vijaya Kancherla, Lisa Marengo, Mark A Canfield, Karin Kallen, Nathalie Lelong, Jorge L Camelo, Erin B Stallings, Abbey M Jones, Amy Nance, My-Phuong Huynh, Maria-Luisa Martínez-Fernández, Antonin Sipek, Anna Pierini, Wendy N Nembhard, Dorit Goetz, Anke Rißmann, Boris Groisman, Leonora Luna-Muñoz, Elena Szabova, Serhiy Lapchenko, Ignacio Zarante, Paula Hurtado-Villa, Laura E Martinez, Giovanna Tagliabue, Danielle Landau, Miriam Gatt, Saeed Dastgiri, and Margery Morgan American journal of medical genetics. Part A 2019 Sep |
| Zika virus enhances monocyte adhesion and transmigration favoring viral dissemination to neural cells. Nilda Vanesa Ayala-Nunez, Gautier Follain, François Delalande, Aurélie Hirschler, Emma Partiot, Gillian L Hale, Brigid C Bollweg, Judith Roels, Maxime Chazal, Florian Bakoa, Margot Carocci, Sandrine Bourdoulous, Orestis Faklaris, Sherif R Zaki, Anita Eckly, Béatrice Uring-Lambert, Frédéric Doussau, Sarah Cianferani, Christine Carapito, Frank M J Jacobs, Nolwenn Jouvenet, Jacky G Goetz, and Raphael Gaudin Nature communications 2019 Sep 10(1) 4430 |
| Rapid Identification and Investigation of an HIV Risk Network Among People Who Inject Drugs -Miami, FL, 2018. Hansel Tookes, Tyler S Bartholomew, Shana Geary, James Matthias, Karalee Poschman, Carina Blackmore, Celeste Philip, Edward Suarez, David W Forrest, Allan E Rodriguez, Michael A Kolber, Felicia Knaul, Leah Colucci, and Emma Spencer AIDS and behavior 2019 Sep |
| Cancer collection efforts in the United States provide clinically relevant data on all primary brain and other CNS tumors. Carol Kruchko, Haley Gittleman, Jennifer Ruhl, Jim Hofferkamp, Elizabeth M Ward, Quinn T Ostrom, Recinda L Sherman, Sandra F Jones, Jill S Barnholtz-Sloan, and Reda J Wilson Neuro-oncology practice 2019 Sep 6(5) 330-339 |
| Isolation and characterization of Akhmeta virus from wild caught rodents ( Apodemus spp.) in Georgia. Jeffrey B Doty, Giorgi Maghlakelidze, Irakli Sikharulidze, Shin-Lin Tu, Clint N Morgan, Matthew R Mauldin, Otar Parkadze, Natia Kartskhia, Maia Turmanidze, Audrey Matheny, Whitni Davidson, Shiyuyun Tang, Jinxin Gao, Yu Li, Chris Upton, Darin S Carroll, Ginny L Emerson, and Yoshinori Nakazawa Journal of virology 2019 Sep |
| The Diagnosis of Fungal Neglected Tropical Diseases (Fungal NTDs) and the Role of Investigation and Laboratory Tests: An Expert Consensus Report. Roderick Hay, David W Denning, Alexandro Bonifaz, Flavio Queiroz-Telles, Karlyn Beer, Beatriz Bustamante, Arunaloke Chakrabarti, Maria de Guadalupe Chavez-Lopez, Tom Chiller, Muriel Cornet, Roberto Estrada, Guadalupe Estrada-Chavez, Ahmed Fahal, Beatriz L Gomez, Ruoyu Li, Yesholata Mahabeer, Anisa Mosam, Lala Soavina Ramarozatovo, Mala Rakoto Andrianarivelo, Fahafahantsoa Rapelanoro Rabenja, Wendy van de Sande, and Eduard E Zijlstra Tropical medicine and infectious disease 2019 Sep (4) |
| A comparison of machine learning algorithms for the surveillance of autism spectrum disorder. Scott H Lee, Matthew J Maenner, and Charles M Heilig PloS one 2019 14(9) e0222907 |
| Net age, but not integrity, may be associated with decreased protection against Plasmodium falciparum infection in southern Malawi. Liana R Andronescu, Andrea G Buchwald, Jenna E Coalson, Lauren Cohee, Andy Bauleni, Jenny A Walldorf, Chifundo Kandangwe, Themba Mzilahowa, Terrie E Taylor, Don P Mathanga, and Miriam K Laufer Malaria journal 2019 Sep 18(1) 329 |
| Infectious Causes of Acute Gastroenteritis in US Children Undergoing Allogeneic Hematopoietic Cell Transplant: A Longitudinal, Multicenter Study. Jennifer E Schuster, Samantha H Johnston, Bhinnata Piya, Daniel E Dulek, Mary E Wikswo, Rendie McHenry, Hannah Browne, Rashi Gautam, Michael D Bowen, Jan Vinjé, Daniel C Payne, Parvin Azimi, Rangaraj Selvarangan, Natasha Halasa, and Janet A Englund Journal of the Pediatric Infectious Diseases Society 2019 Sep |
| On the Fly: Interactions Between Birds, Mosquitoes, and Environment That Have Molded West Nile Virus Genomic Structure Over Two Decades. Nisha K Duggal, Kate E Langwig, Gregory D Ebel, and Aaron C Brault Journal of medical entomology 2019 Sep |
| SeqSero2: rapid and improved Salmonella serotype determination using whole genome sequencing data. Shaokang Zhang, Hendrik C Den-Bakker, Shaoting Li, Jessica Chen, Blake A Dinsmore, Charlotte Lane, A C Lauer, Patricia I Fields, and Xiangyu Deng Applied and environmental microbiology 2019 Sep |
| Integration of inflammation, fibrosis, and cancer induced by carbon nanotubes. Jie Dong, and Qiang Ma Nanotoxicology 2019 Sep 1-31 |
| Multistate population and whole genome sequence based strain surveillance of invasive pneumococci recovered in the United States during 2017. Jasmine Varghese, Sopio Chochua, Theresa Tran, Hollis Walker, Zhongya Li, Paula M Snippes Vagnone, Ruth Lynfield, Lesley McGee, Yuan Li, Benjamin Metcalf, Tamara Pilishvili, and Bernard Beall Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2019 Sep |
| Rapid Detection of Genetic Engineering, Structural Variation, and Antimicrobial Resistance Markers in Bacterial Biothreat Pathogens by Nanopore Sequencing. Amy S Gargis, Blake Cherney, Andrew B Conley, Heather P McLaughlin, and David Sue Scientific reports 2019 Sep 9(1) 13501 |
| Rare mutations in Pfmdr1 gene of Plasmodium falciparum detected in clinical isolates from patients treated with anti-malarial drug in Nigeria. Abel O Idowu, Wellington A Oyibo, Sanjib Bhattacharyya, Manjeet Khubbar, Udoma E Mendie, Violet V Bumah, Carolyn Black, Joseph Igietseme, and Anthony A Azenabor Malaria journal 2019 Sep 18(1) 319 |
| Out of Pocket Diabetes-Related Medical Expenses for Adolescents and Young Adults With Type 1 Diabetes: The SEARCH for Diabetes in Youth Study. Lina Merjaneh, Catherine Pihoker, Jasmin Divers, Nora Fino, Georgeanna Klingensmith, Sundar S Shrestha, Sharon Saydah, Elizabeth J Mayer-Davis, Dana Dabelea, Jeffrey Powell, Jean M Lawrence, Lawrence M Dolan, and Davene R Wright Diabetes care 2019 Sep |
| A global genotyping survey of Strongyloides stercoralis and Strongyloides fuelleborni using deep amplicon sequencing. Joel L N Barratt, Meredith Lane, Emir Talundzic, Travis Richins, Gemma Robertson, Fabio Formenti, Bobbi Pritt, Guilherme Verocai, Joelma Nascimento de Souza, Neci Mato Soares, Rebecca Traub, Dora Buonfrate, and Richard S Bradbury PLoS neglected tropical diseases 2019 Sep (9) e0007609 |
| Hospital-level high-risk antibiotic use in relation to hospital-associated Clostridioides difficile infections: Retrospective analysis of 2016-2017 data from US hospitals. Ying P Tabak, Arjun Srinivasan, Kalvin C Yu, Stephen G Kurtz, Vikas Gupta, Steven Gelone, Patrick J Scoble, and L Clifford McDonald Infection control and hospital epidemiology 2019 Sep 1-7 |
| A New Solid Matrix for Preservation of Viral Nucleic Acid from Clinical Specimens at Ambient Temperature. Theresa Cromeans, Jothikumar Narayanan, Jeongsu Lee, Nikail Collins, Cara C Burns, Vincent R Hill, and Jan Vinjé Journal of virological methods 2019 Sep 113732 |
| An investigation of Salmonella Fluntern illnesses linked to leopard geckos-United States, 2018. Lia Koski, Emilio DeBess, Hilary E Rosen, Roshan Reporter, Thomas Waltz, Molly Leeper, Jeniffer Concepcion Acevedo, Renáta Karpíšková, Jacquelyn McCormick, Tereza Gelbicova, Brenda Morningstar-Shaw, Megin Nichols, and Richard F Leman Zoonoses and public health 2019 Sep |
| Multistate outbreak of Salmonella Poona infections associated with imported cucumbers, 2015-2016. M Laughlin, L Bottichio, J Weiss, J Higa, E McDonald, R Sowadsky, D Fejes, A Saupe, G Provo, S Seelman, J Concepción-Acevedo, L Gieraltowski, and Epidemiology and infection 2019 Sep e270 |
| The detection of Coccidioides from ambient air in Phoenix, Arizona: Evidence of uneven distribution and seasonality. Lalitha Gade, Orion Z McCotter, Jolene R Bowers, Victor Waddell, Shane Brady, Joseph A Carvajal, Rebecca Sunenshine, Kenneth K Komatsu, David M Engelthaler, Tom Chiller, and Anastasia P Litvintseva Medical mycology 2019 Sep |
| Genetic Similarity of Gonococcal Homologs to Meningococcal Outer Membrane Proteins of Serogroup B Vaccine. Henju Marjuki, Nadav Topaz, Sandeep J Joseph, Kim M Gernert, Ellen N Kersh, , and Xin Wang mBio 2019 Sep 10(5) |
| Distribution of Neisseria meningitidis serogroup B (NmB) vaccine antigens in meningococcal disease causing isolates in the United States during 2009-2014, prior to NmB vaccine licensure. How-Yi Chang, Jeni Vuong, Fang Hu, Paul Liberator, Alex Chen, Cecilia B Kretz, Amy Blain, Li Hao, Adam C Retchless, Melissa J Whaley, Annaliesa S Anderson, and Xin Wang The Journal of infection 2019 Sep |
| Changes in micronutrient and inflammation serum biomarker concentrations after a norovirus human challenge. Anne M Williams, Chandresh N Ladva, Juan S Leon, Ben A Lopman, Vin Tangpricha, Ralph D Whitehead, Andrew E Armitage, Katherine Wray, Alireza Morovat, Sant-Rayn Pasricha, David Thurnham, Sherry A Tanumihardjo, Setti Shahab-Ferdows, Lindsay Allen, Rafael C Flores-Ayala, and Parminder S Suchdev The American journal of clinical nutrition 2019 Aug |
| Multistate outbreaks of Salmonella infections linked to imported Maradol papayas - United States, December 2016-September 2017. R Hassan, B Whitney, D L Williams, K Holloman, D Grady, D Thomas, E Omoregie, K Lamba, M Leeper, L Gieraltowski, and Epidemiology and infection 2019 Sep e265 |
| Intracellular changes of a swine tracheal cell line infected with a Mycoplasma hyopneumoniae pathogenic strain. Fernanda M A Leal Zimmer, Hercules Moura, John R Barr, and Henrique Bunselmeyer Ferreira Microbial pathogenesis 2019 Sep 137103717 |
| The effect of sputum quality and volume on the yield of bacteriologically-confirmed TB by Xpert MTB/RIF and smear. Onani Zimba, Tsaone Tamuhla, Joyce Basotli, Gaoraelwe Letsibogo, Sherri Pals, Unami Mathebula, Anikie Mathoma, Christopher Serumola, Kitso Ramogale, Rosanna Boyd, Tiffany Tran, Alyssa Finlay, Andrew Auld, Anand Date, Heather Alexander, Violet Chihota, and Tefera Agizew The Pan African medical journal 2019 33110 |
| Burkholderia pseudomallei, the causative agent of melioidosis, is rare but ecologically established and widely dispersed in the environment in Puerto Rico. Carina M Hall, Sierra Jaramillo, Rebecca Jimenez, Nathan E Stone, Heather Centner, Joseph D Busch, Nicole Bratsch, Chandler C Roe, Jay E Gee, Alex R Hoffmaster, Sarai Rivera-Garcia, Fred Soltero, Kyle Ryff, Janice Perez-Padilla, Paul Keim, Jason W Sahl, and David M Wagner PLoS neglected tropical diseases 2019 Sep (9) e0007727 |
| Updated classification of norovirus genogroups and genotypes. Preeti Chhabra, Miranda de Graaf, Gabriel I Parra, Martin Chi-Wai Chan, Kim Green, Vito Martella, Qiuhong Wang, Peter A White, Kazuhiko Katayama, Harry Vennema, Marion P G Koopmans, and Jan Vinjé The Journal of general virology 2019 Sep |
| Technology to advance infectious disease forecasting for outbreak management. Dylan B George, Wendy Taylor, Jeffrey Shaman, Caitlin Rivers, Brooke Paul, Tara O'Toole, Michael A Johansson, Lynette Hirschman, Matthew Biggerstaff, Jason Asher, and Nicholas G Reich Nature communications 2019 Sep (1) 3932 |
| Association of urinary concentrations of early pregnancy phthalate metabolites and bisphenol A with length of gestation. Helen B Chin, Anne Marie Jukic, Allen J Wilcox, Clarice R Weinberg, Kelly K Ferguson, Antonia M Calafat, D Robert McConnaughey, and Donna D Baird Environmental health : a global access science source 2019 Aug 18(1) 80 |
| Outbreak of diarrhoea in piglets caused by novel rotavirus genotype G4P[49] in north-western district of Bangladesh, February 2014. Shamim Sarkar, Mathew Dioh Esona, Rashi Gautam, Christina J Castro, Terry Fei Fan Ng, Warda Haque, Salah Uddin Khan, Mohammad Enayet Hossain, Mohammed Ziaur Rahman, Emily S Gurley, Erin D Kennedy, Michael D Bowen, Umesh D Parashar, and Mustafizur Rahman Transboundary and emerging diseases 2019 Aug |
| Notes from the Field: Multistate Outbreak of Salmonella Agbeni Associated with Consumption of Raw Cake Mix - Five States, 2018. Stephen G Ladd-Wilson, Karim Morey, Sarah E Koske, Bailey Burkhalter, Lyndsay Bottichio, Joshua Brandenburg, John Fontana, Kristina Tenney, Kirthi K Kutumbaka, Mansour Samadpour, Katherine Kreil, and Paul R Cieslak MMWR. Morbidity and mortality weekly report 2019 Aug (34) 751-752 |
| Comparing QuantiFERON-TB Gold Plus with other tests to diagnose Mycobacterium tuberculosis infection. Thara K Venkatappa, Rose Punnoose, Dolly J Katz, Michael P Higgins, Niaz Banaei, Edward A Graviss, Robert W Belknap, Christine S Ho, and Journal of clinical microbiology 2019 Aug |
| Sero-identification of the aetiologies of human malaria exposure (Plasmodium spp.) in the Limu Kossa District of Jimma Zone, South western Ethiopia. Sindew Mekasha Feleke, Bokretsion Gidey Brhane, Hassen Mamo, Ashenafi Assefa, Adugna Woyessa, Guilherme Maerschner Ogawa, and Vitaliano Cama Malaria journal 2019 Aug 18(1) 292 |
| Granulomatous amoebic encephalitis caused by Acanthamoeba in a patient with AIDS: a challenging diagnosis. Hsien Lee Lau, Daniela F De Lima Corvino, Francisco M Guerra, Amer M Malik, Paola N Lichtenberger, Sakir H Gultekin, Jana M Ritter, Shantanu Roy, Ibne Karim M Ali, Jennifer R Cope, M Judith D Post, and Jose A Gonzales Zamora Acta clinica Belgica 2019 Aug 1-5 |
| Development of a UPLC-ESI-MS/MS method to measure urinary metabolites of selected VOCs: Benzene, cyanide, furfural, furfuryl alcohol, 5-hydroxymethylfurfural, and N-methyl-2-pyrrolidone. Deepak Bhandari, Declan McCarthy, Chloe Biren, Cameron Movassaghi, Benjamin C Blount, and Víctor R De Jesús Journal of chromatography. B, Analytical technologies in the biomedical and life sciences 2019 Aug 1126-1127121746 |
| Exposures and Health Effects of Bioaerosols in Seafood Processing Workers - a Position Statement. Jakob H Bonlokke, Berit Bang, Lisbeth Aasmoe, Anas M Abdel Rahman, Laura N Syron, Eva Andersson, Anna Dahlman-Höglund, Andreas L Lopata, and Mohamed Jeebhay Journal of agromedicine 2019 Aug 1-8 |
| Cryptosporidium Genotyping for Epidemiology Tracking. Dawn M Roellig, and Lihua Xiao Methods in molecular biology (Clifton, N.J.) 2020 103-116 |
| Cryptosporidium Oocyst Purification Using Discontinuous Gradient Centrifugation. Michael J Arrowood Methods in molecular biology (Clifton, N.J.) 2020 205243-59 |
| Whole Genome Sequencing to Identify Drivers of Carbapenem-Resistant Klebsiella pneumoniae Transmission Within and Between Regional Long-Term Acute Care Hospitals. Jennifer H Han, Zena Lapp, Frederic Bushman, Ebbing Lautenbach, Ellie J C Goldstein, Lisa Mattei, Casey E Hofstaedter, Dorothy Kim, Irving Nachamkin, Charles Garrigan, Tanya Jain, Warren Bilker, Hannah M Wolford, Rachel B Slayton, Jacqueleen Wise, Pam Tolomeo, and Evan S Snitkin Antimicrobial agents and chemotherapy 2019 Aug |
| Multidrug-Resistant Salmonella I 4,[5],12:i:- and Salmonella Infantis Infections Linked to Whole Roasted Pigs from a Single Slaughter and Processing Facility. Vance Kawakami, Lyndsay Bottichio, Jennifer Lloyd, Heather Carleton, Molly Leeper, Gina Olson, Zhi Li, Bonnie Kissler, Kristina M Angelo, Laura Whitlock, Jennifer Sinatra, Stephanie Defibaugh-Chavez, Amelia Bicknese, Meagan Kay, Matthew E Wise, Collin Basler, and Jeff Duchin Journal of food protection 2019 Sep (9) 1615-1624 |
| Outbreak of Salmonella Newport Infections with Decreased Susceptibility to Azithromycin Linked to Beef Obtained in the United States and Soft Cheese Obtained in Mexico - United States, 2018-2019. Ian D Plumb, Colin A Schwensohn, Laura Gieraltowski, Selam Tecle, Zachary D Schneider, Jennifer Freiman, Andrea Cote, Douglas Noveroske, Jonathan Kolsin, Joshua Brandenburg, Jessica C Chen, Kaitlin A Tagg, Porscha Bumpus White, Hazel J Shah, Louise K Francois Watkins, Matthew E Wise, and Cindy R Friedman MMWR. Morbidity and mortality weekly report 2019 Aug 68(33) 713-717 |
| Artificial intelligence: Implications for the future of work. John Howard American journal of industrial medicine 2019 Aug |
| Performance of laboratory tests used to measure blood phenylalanine for the monitoring of patients with Phenylketonuria. S J Moat, D Schulenburg-Brand, H Lemonde, J R Bonham, C W Weykamp, J V Mei, G S Shortland, and R S Carling Journal of inherited metabolic disease 2019 Aug |
| Creation of a Geospatially Explicit, Agent-based Model of a Regional Healthcare Network with Application to Clostridioides difficile Infection. Sarah Rhea, Rainer Hilscher, James I Rineer, Breda Munoz, Kasey Jones, Stacy M Endres-Dighe, Lauren M DiBiase, Emily E Sickbert-Bennett, David J Weber, Jennifer K MacFarquhar, Heather Dubendris, and Georgiy Bobashev Health security 17(4) 276-290 |
| Periconceptional folic acid and risk for neural tube defects among higher risk pregnancies. Julie M Petersen, Samantha E Parker, Corey M Benedum, Allen A Mitchell, Sarah C Tinker, and Martha M Werler Birth defects research 2019 Aug |
| Development of a World Health Organization International Reference Panel for different genotypes of hepatitis E virus for nucleic acid amplification testing. Sally A Baylis, Kay-Martin O Hanschmann, Keiji Matsubayashi, Hidekatsu Sakata, Anne-Marie Roque-Afonso, Marco Kaiser, Victor M Corman, Saleem Kamili, Rakesh Aggarwal, Nirupma Trehanpati, Thomas Gärtner, Emma C Thomson, Christopher A Davis, Ana da Silva Filipe, Tamer T Abdelrahman, Johannes Blümel, Eriko Terao, , Dieter Pullirsch, Brigitte Hottowy, Lia Laura Lewis-Ximenez, Marcelo Alves Pinto, Youchun Wang, Weijin Huang, Chenyan Zhao, Zizheng Zheng, James Wai Kuo Shih, Zi-Min Tang, Wen-Fang Ji, Jacques Izopet, Sébastien Lhomme, Martine Dubois, Maike Schönborn, Christiane Beckort, Markus Hess, Manuela Tillack, Daniel Brischke, Tanja Vollmer, Jens Dreier, Jürgen Wenzel, Jasmin Klein, Joan O’Riordan, Jessica Murphy, Fiona Boland, Barbara Pacini, Giulio Pisani, Matteo Simeoni, Sara Fabi, Saeko Mizusawa, Shigeharu Uchida, Elisabet Ekvärn, Boris Hogema, Tim Schuurman, Hubert Niesters, Oliver Schär, Samreen Ijaz, Steven Dicks, Becky Haywood, Tonya Mixson-Hayden, Jeffrey Linnen, Edgar Ong, and Robin Cory Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2019 |
| Mammalian pathogenicity and transmissibility of a reassortant Eurasian avian-like A(H1N1v) influenza virus associated with human infection in China (2015). Joanna A Pulit-Penaloza, Jessica A Belser, Terrence M Tumpey, and Taronna R Maines Virology 2019 Aug 53731-35 |
| Detection of classic and cryptic Strongyloides genotypesby deep amplicon sequencing: A preliminary survey of dog and human specimens collected from remote Australian communities. Meruyert Beknazarova, Joel L N Barratt, Richard S Bradbury, Meredith Lane, Harriet Whiley, and Kirstin Ross PLoS neglected tropical diseases 2019 Aug (8) e0007241 |
| Validating the NCBI AMRFinder Tool and Resistance Gene Database Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of NARMS Isolates. Michael Feldgarden, Vyacheslav Brover, Daniel H Haft, Arjun B Prasad, Douglas J Slotta, Igor Tolstoy, Gregory H Tyson, Shaohua Zhao, Chih-Hao Hsu, Patrick F McDermott, Daniel A Tadesse, Cesar Morales, Mustafa Simmons, Glenn Tillman, Jamie Wasilenko, Jason P Folster, and William Klimke Antimicrobial agents and chemotherapy 2019 Aug |
| Diagnosis of Progressive Disseminated Histoplasmosis in Advanced HIV: A Meta-Analysis of Assay Analytical Performance. Diego H Caceres, Martha Knuth, Gordana Derado, and Mark D Lindsley Journal of fungi (Basel, Switzerland) 2019 Aug 5(3) |
| Simultaneous detection of four protozoan parasites on leafy greens using a novel multiplex PCR assay. Karen Shapiro, Minji Kim, Veronica B Rajal, Michael J Arrowood, Andrea Packham, Beatriz Aguilar, and Stefan Wuertz Food microbiology 2019 Dec 103252 |
| Impact of nucleic acid extraction platforms on hepatitis virus genome detection. Matthew D Pauly, Saleem Kamili, and Tonya M Hayden Journal of virological methods 2019 Aug 113715 |
| Using Ancillary Sociodemographic Data to Identify Sexual Minority Adults Among Those Responding "Something Else" or "Don't Know" to Sexual Orientation Questions. Marc N Elliott, James M Dahlhamer, Sarah MacCarthy, Megan K Beckett, Nate Orr, Paul Guerino, Denis Agniel, Catherine L Saunders, Mark A Schuster, Judy H Ng, and Steven C Martino Medical care 2019 Aug |
| Development and characterization of a reverse genetics system for influenza D virus. Jieshi Yu, Runxia Liu, Bin Zhou, Tsui-Wen Chou, Elodie Ghedin, Zizhang Sheng, Rongyuan Gao, Shao-Lun Zhai, Dan Wang, and Feng Li Journal of virology 2019 Aug |
| Identification of Candida auris using the updated 8.01 VITEK®2 yeast identification system: a multi-laboratory evaluation study. Georges Ambaraghassi, Philippe J Dufresne, Simon F Dufresne, Émilie Vallières, José F Muñoz, Christina A Cuomo, Elizabeth L Berkow, Shawn R Lockhart, and Me-Linh Luong Journal of clinical microbiology 2019 Aug |
| Use of electronic health records from a statewide health information exchange to support public health surveillance of diabetes and hypertension. Roberta Z Horth, Shelly Wagstaff, Theron Jeppson, Vishal Patel, Jefferson McClellan, Nicole Bissonette, Michael Friedrichs, and Angela C Dunn BMC public health 2019 Aug 19(1) 1106 |
| Antibodies to Enteroviruses in Cerebrospinal Fluid of Patients with Acute Flaccid Myelitis. Nischay Mishra, Terry Fei Fan Ng, Rachel L Marine, Komal Jain, James Ng, Riddhi Thakkar, Adrian Caciula, Adam Price, Joel A Garcia, Jane C Burns, Kiran T Thakur, Kimbell L Hetzler, Janell A Routh, Jennifer L Konopka-Anstadt, W Allan Nix, Rafal Tokarz, Thomas Briese, M Steven Oberste, and W Ian Lipkin mBio 2019 Aug (4) |
| Reply to 'Reconciling disparate estimates of viral genetic diversity during human influenza infections'. Leo L M Poon, Timothy Song, David E Wentworth, Edward C Holmes, Benjamin D Greenbaum, Joseph S M Peiris, Benjamin J Cowling, and Elodie Ghedin Nature genetics 2019 Aug |
| Strengthening laboratory capacity for detection of respiratory viral pathogens through the Global Health Security Agenda (GHSA) framework. Brett Whitaker, Karen A Alroy, Erica Guthrie, Sarah Schildecker, Susan Hiers, Jill Woodard, and S Arunmozhi Balajee African journal of laboratory medicine 2019 (1) 861 |
| Effect of Time of Day of Infection on Chlamydia Infectivity and Pathogenesis. Stephanie R Lundy, Tarek Ahmad, Tankya Simoneaux, Ifeyinwa Benyeogor, YeMaya Robinson, Zenas George, Debra Ellerson, Ward Kirlin, Tolulope Omosun, Francis O Eko, Carolyn M Black, Uriel Blas-Machado, Jason P DeBruyne, Joseph U Igietseme, Qing He, and Yusuf O Omosun Scientific reports 2019 Aug 9(1) 11405 |
| Incomplete influenza A virus genomes occur frequently but are readily complemented during localized viral spread. Nathan T Jacobs, Nina O Onuoha, Alice Antia, John Steel, Rustom Antia, and Anice C Lowen Nature communications 2019 Aug 10(1) 3526 |
| Estimating prevalence of type I and type II diabetes using incidence rates: the SEARCH for diabetes in youth study. Thaddäus Tönnies, Giuseppina Imperatore, Annika Hoyer, Sharon H Saydah, Ralph B D'Agostino, Jasmin Divers, Scott Isom, Dana Dabelea, Jean M Lawrence, Elizabeth J Mayer-Davis, Catherine Pihoker, Lawrence Dolan, and Ralph Brinks Annals of epidemiology 2019 Jul |
| Commensal Neisseria Kill Neisseria gonorrhoeae through a DNA-Dependent Mechanism. Won Jong Kim, Dustin Higashi, Maira Goytia, Maria A Rendón, Michelle Pilligua-Lucas, Matthew Bronnimann, Jeanine A McLean, Joseph Duncan, David Trees, Ann E Jerse, and Magdalene So Cell host & microbe 2019 Jul |
| Molecular typing of clinical and environmental isolates of Cryptococcus gattii species complex from Southern California, United States. Steven Hurst, Colleen Lysen, Gail Cooksey, Duc J Vugia, Anastasia P Litvintseva, and Shawn R Lockhart Mycoses 2019 Aug |
| Comparison of respiratory pathogen yields from Nasopharyngeal/Oropharyngeal swabs and sputum specimens collected from hospitalized adults in rural Western Kenya. Bryan O Nyawanda, Henry N Njuguna, Clayton O Onyango, Caroline Makokha, Shirley Lidechi, Barry Fields, Jonas M Winchell, Jim S Katieno, Jeremiah Nyaundi, Fredrick Ade, Gideon O Emukule, Joshua A Mott, Nancy Otieno, Marc-Alain Widdowson, and Sandra S Chaves Scientific reports 2019 Aug (1) 11237 |
| Multicenter Outbreak of Gram-Negative Bloodstream Infections in Hemodialysis Patients. Shannon A Novosad, Jason Lake, Duc Nguyen, Elizabeth Soda, Heather Moulton-Meissner, Mai T Pho, Nicole Gualandi, Lurit Bepo, Richard A Stanton, Jonathan B Daniels, George Turabelidze, Kristen Van Allen, Matthew Arduino, Alison Laufer Halpin, Jennifer Layden, and Priti R Patel American journal of kidney diseases : the official journal of the National Kidney Foundation 2019 Jul |
| Genome of Alaskapox Virus, A Novel Orthopoxvirus Isolated from Alaska. Crystal M Gigante, Jinxin Gao, Shiyuyun Tang, Andrea M McCollum, Kimberly Wilkins, Mary G Reynolds, Whitni Davidson, Joseph McLaughlin, Victoria A Olson, and Yu Li Viruses 2019 Aug (8) |
| An Empirical Validation of the Within-subject Biospecimens Pooling Approach to Minimize Exposure Misclassification in Biomarker-based Studies. Céline Vernet, Claire Philippat, Lydiane Agier, Antonia M Calafat, Xiaoyun Ye, Sarah Lyon-Caen, Pierre Hainaut, Valérie Siroux, Enrique F Schisterman, and Rémy Slama Epidemiology (Cambridge, Mass.) 2019 Sep 30(5) 756-767 |
| Notes from the Field: Clinical Klebsiella pneumoniae Isolate with Three Carbapenem Resistance Genes Associated with Urology Procedures - King County, Washington, 2018. Kirsten Vannice, Eileen Benoliel, Kelly Kauber, Claire Brostrom-Smith, Patricia Montgomery, Meagan Kay, Maroya Walters, Michael Tran, Marisa D'Angeli, and Jeff Duchin MMWR. Morbidity and mortality weekly report 2019 Aug 68(30) 667-668 |
| Perspective: The Clinical Use of Polygenic Risk Scores: Race, Ethnicity, and Health Disparities. Megan C Roberts, Muin J Khoury, and George A Mensah Ethnicity & disease 2019 29(3) 513-516 |
| The haematological consequences of Plasmodium vivax malaria after chloroquine treatment with and without primaquine: a WorldWide Antimalarial Resistance Network systematic review and individual patient data meta-analysis. Robert J Commons, Julie A Simpson, Kamala Thriemer, Cindy S Chu, Nicholas M Douglas, Tesfay Abreha, Sisay G Alemu, Arletta Añez, Nicholas M Anstey, Abraham Aseffa, Ashenafi Assefa, Ghulam R Awab, J Kevin Baird, Bridget E Barber, Isabelle Borghini-Fuhrer, Umberto D'Alessandro, Prabin Dahal, André Daher, Peter J de Vries, Annette Erhart, Margarete S M Gomes, Matthew J Grigg, Jimee Hwang, Piet A Kager, Tsige Ketema, Wasif A Khan, Marcus V G Lacerda, Toby Leslie, Benedikt Ley, Kartini Lidia, Wuelton M Monteiro, Dhelio B Pereira, Giao T Phan, Aung P Phyo, Mark Rowland, Kavitha Saravu, Carol H Sibley, André M Siqueira, Kasia Stepniewska, Walter R J Taylor, Guy Thwaites, Binh Q Tran, Tran T Hien, José Luiz F Vieira, Sonam Wangchuk, James Watson, Timothy William, Charles J Woodrow, Francois Nosten, Philippe J Guerin, Nicholas J White, and Ric N Price BMC medicine 2019 Aug 17(1) 151 |
| Heterogeneous susceptibility to rotavirus infection and gastroenteritis in two birth cohort studies: Parameter estimation and epidemiological implications. Joseph A Lewnard, Benjamin A Lopman, Umesh D Parashar, Aisleen Bennett, Naor Bar-Zeev, Nigel A Cunliffe, Prasanna Samuel, M Lourdes Guerrero, Guillermo Ruiz-Palacios, Gagandeep Kang, and Virginia E Pitzer PLoS computational biology 2019 Jul 15(7) e1007014 |
| Draft Genome Sequences of Antimicrobial-Resistant Shigella Clinical Isolates from Pakistan. Sara Lomonaco, Christine Lascols, Matthew A Crawford, Kevin Anderson, David R Hodge, Debra J Fisher, Segaran P Pillai, Stephen A Morse, Erum Khan, Molly A Hughes, Marc W Allard, and Shashi K Sharma Microbiology resource announcements 2019 Jul (30) |
| Messenger RNA levels of the Polo-like kinase gene (PLK) correlate with cytokinesis in the Trypanosoma rangeli cell cycle. Elisa Beatriz Prestes, Patrícia Hermes Stoco, Milene Höehr de Moraes, Hércules Moura, and Edmundo Carlos Grisard Experimental parasitology 2019 Jul 107727 |
| Notes from the Field: Targeted Biomonitoring for GenX and Other Per- and Polyfluoroalkyl Substances Following Detection of Drinking Water Contamination - North Carolina, 2018. Jamie R Pritchett, Jessica L Rinsky, Beth Dittman, Ariel Christensen, Rick Langley, Zack Moore, Aaron T Fleischauer, Kate Koehler, Antonia M Calafat, Rachel Rogers, Laconial Esters, Rodney Jenkins, Faye Collins, Debra Conner, and Patrick Breysse MMWR. Morbidity and mortality weekly report 2019 Jul 68(29) 647-648 |
| Social mixing and clinical features linked with transmission in a network of extensively drug-resistant (XDR) tuberculosis cases in KwaZulu-Natal, South Africa. Kristin N Nelson, Samuel M Jenness, Barun Mathema, Benjamin A Lopman, Sara C Auld, N Sarita Shah, James C M Brust, Nazir Ismail, Shaheed Vally Omar, Tyler S Brown, Salim Allana, Angie Campbell, Pravi Moodley, Koleka Mlisana, and Neel R Gandhi Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Jul |
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