CDC-Authored Genomics and Precision Health Publications Database
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Last data update: Apr 18, 2019. (Total: 2415 publications since 2011)
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| Evaluation and Management of Congenital Chagas Disease in the United States. Morven S Edwards, Kelly K Stimpert, Stephanie R Bialek, and Susan P Montgomery Journal of the Pediatric Infectious Diseases Society 2019 Apr |
| Comparison of nucleic acid extraction methods for next-generation sequencing of avian influenza A virus from ferret respiratory samples. Han Di, Sharmi Thor, A Angelica Trujillo, Thomas Stark, Atanaska Marinova-Petkova, Joyce Jones, David E Wentworth, John Barnes, and C Todd Davis Journal of virological methods 2019 Apr |
| International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact. Rebecca A Gladstone, Stephanie W Lo, John A Lees, Nicholas J Croucher, Andries J van Tonder, Jukka Corander, Andrew J Page, Pekka Marttinen, Leon J Bentley, Theresa J Ochoa, Pak Leung Ho, Mignon du Plessis, Jennifer E Cornick, Brenda Kwambana-Adams, Rachel Benisty, Susan A Nzenze, Shabir A Madhi, Paulina A Hawkins, Dean B Everett, Martin Antonio, Ron Dagan, Keith P Klugman, Anne von Gottberg, Lesley McGee, Robert F Breiman, Stephen D Bentley, and EBioMedicine 2019 Apr |
| Implementing Web-Based Interventions in HIV Primary Care Clinics: Pilot Implementation Evaluation of Positive Health Check. Camilla Harshbarger, Olivia Burrus, Brittany A Zulkiewicz, Alexa M Ortiz, Carla A Galindo, Bryan R Garner, Robert D Furberg, and Megan A Lewis JMIR formative research 2019 Apr 3(2) e10688 |
| Characterization of Novel Reoviruses [Wad Medani virus (Orbivirus) and Kundal (Coltivirus)] collected from Hyalomma antolicum ticks in India during CCHF surveillance. Pragya D Yadav, Shannon L M Whitmer, Prasad Sarkale, Terry Fei Fan Ng, Cynthia S Goldsmith, Dimpal A Nyayanit, Mathew D Esona, Punya Shrivastava-Ranjan, Rajen Lakra, Prachi Pardeshi, Triparna D Majumdar, Alicia Francis, John D Klena, Stuart T Nichol, Ute Ströher, and Devendra Mourya Journal of virology 2019 Apr |
| Surveillance for incidence and etiology of early-onset neonatal sepsis in Soweto, South Africa. Sithembiso C Velaphi, Matthew Westercamp, Malefu Moleleki, Tracy Pondo, Ziyaad Dangor, Nicole Wolter, Anne von Gottberg, Nong Shang, Alicia Demirjian, Jonas M Winchell, Maureen H Diaz, Firdose Nakwa, Grace Okudo, Jeannette Wadula, Clare Cutland, Stephanie J Schrag, and Shabir A Madhi PloS one 2019 14(4) e0214077 |
| Impacts of Hurricanes Irma and Maria on Aedes aegypti Populations, Aquatic Habitats, and Mosquito Infections with Dengue, Chikungunya, and Zika Viruses in Puerto Rico. Roberto Barrera, Gilberto Felix, Veronica Acevedo, Manuel Amador, Damaris Rodriguez, Luis Rivera, Orlando Gonzalez, Nicole Nazario, Marianyoly Ortiz, Jorge L Muñoz, Stephen Waterman, and Ryan R Hemme The American journal of tropical medicine and hygiene 2019 Apr |
| Diversity and characterization of HIV-1 subtypes in the United States, 2008-2016. Richard L Kline, Neeraja Saduvala, Tianchi Zhang, and Alexandra M Oster Annals of epidemiology 2019 Mar |
| GENOTYPES AND POPULATION GENETICS OF CRYPTOCOCCUS NEOFORMANS AND CRYPTOCOCCUS GATTII SPECIES COMPLEXES IN EUROPE AND THE MEDITERRANEAN AREA. Massimo Cogliati, Marie Desnos-Ollivier, Ilka McCormick-Smith, Volker Rickerts, Kennio Ferreira-Paim, Wieland Meyer, Teun Boekhout, Ferry Hagen, Bart Theelen, Joäo Inácio, Beatriz Alonso, Maria F Colom, Luciana Trilles, Maria Teresa Montagna, Antonella De Donno, Serdar Susever, Cagri Ergin, Aristea Velegraki, Mohamed S Ellabib, Simona Nardoni, Cristina Macci, Laura Trovato, Ludovico Dipineto, Sevim Akcaglar, Emilija Mlinaric-Missoni, Sebastien Bertout, Ana C F Vencá, Ana C Sampaio, Giuseppe Criseo, Stéphane Ranque, Nilgün Çerikçioglu, Anna Marchese, Luigi Vezzulli, Macit Ilkit, Vincenzo Pasquale, Itzhack Polacheck, and Shawn R Lockhart Fungal genetics and biology : FG & B 2019 Apr |
| Immunological methods for diagnosis and monitoring of IgE-mediated allergy caused by industrial sensitizing agents (IMExAllergy). Baur Xaver et al. Allergy 2019 Apr Allergy 2019 Apr |
| Molecular Phylogeny of Dermacentor parumapertus (Acari: Ixodidae) from Two Locations Within Its Geographical Range. J Santos Portugal, Michelle Allerdice, Gail M Moraru, Jonas King, Christopher D Paddock, Tom Becker, Travis C Smith, and Jerome Goddard Journal of medical entomology 2019 Apr |
| Hepatitis C virus infection among people who inject drugs in Bangkok, Thailand, 2005-2010. Michael Martin, Suphak Vanichseni, Wanna Leelawiwat, Rapeepan Anekvorapong, Boonyos Raengsakulrach, Thitima Cherdtrakulkiat, Udomsak Sangkum, Philip A Mock, Manoj Leethochawalit, Sithisat Chiamwongpaet, Janet M McNicholl, Somyot Kittimunkong, Marcel E Curlin, Kachit Choopanya, and WHO South-East Asia journal of public health 2019 Apr (1) 50-55 |
| Active Surveillance for Norovirus in a US Veterans Affairs Patient Population, Houston, Texas, 2015-2016. Anita K Kambhampati, Blanca Vargas, Mahwish Mushtaq, Hannah Browne, Scott Grytdal, Robert L Atmar, Jan Vinjé, Umesh D Parashar, Benjamin Lopman, Aron J Hall, Maria C Rodriguez-Barradas, and Cristina V Cardemil Open forum infectious diseases 2019 Apr (4) ofz115 |
| Comprehensive Clinical and Laboratory Follow-up of a Female Patient With Ebola Virus Disease: Sierra Leone Ebola Virus Persistence Study. William J Liu, Foday R Sesay, Antoine Coursier, Barbara Knust, Jaclyn E Marrinan, Shannon Whitmer, Suzanna L R McDonald, Philippe Gaillard, Yang Liu, Qiudong Su, Yong Zhang, Ian Crozier, Archchun Ariyarajah, Marylin Carino, Thomas Massaquoi, Nathalie Broutet, Wenbo Xu, Guizhen Wu, Ute Ströher, George F Gao, Pierre Formenty, Foday Sahr, Gibrilla F Deen, and Open forum infectious diseases 2019 Mar (3) ofz068 |
| In Silico Identification of Three Types of Integrative and Conjugative Elements in Elizabethkingia anophelis Strains Isolated from around the World. Jiannong Xu, Dong Pei, Ainsley Nicholson, Yuhao Lan, and Qing Xia mSphere 2019 Apr (2) |
| Multistate Survey of American Dog Ticks (Dermacentor variabilis) for Rickettsia Species. Joy A Hecht, Michelle E J Allerdice, Elizabeth A Dykstra, Laura Mastel, Rebecca J Eisen, Tammi L Johnson, Holly D Gaff, Andrea S Varela-Stokes, Jerome Goddard, Benedict B Pagac, Christopher D Paddock, and Sandor E Karpathy Vector borne and zoonotic diseases (Larchmont, N.Y.) 2019 Apr |
| Development and Validation of a Clinical Laboratory Improvement Amendments-Compliant Multiplex Real-Time PCR Assay for Detection of mcr Genes. Jonathan B Daniels, Davina Campbell, Sandra Boyd, Uzma Ansari, Joseph Lutgring, J Kamile Rasheed, Alison Laufer Halpin, and Maria Sjölund-Karlsson Microbial drug resistance (Larchmont, N.Y.) 2019 Apr |
| Molecular Characterization of Clostridium botulinum Harboring the bont/B7 Gene. Jessica L Halpin, Janet K Dykes, Lee Katz, Dominick A Centurioni, Michael J Perry, Christina T Egan, and Carolina Lúquez Foodborne pathogens and disease 2019 Mar |
| Impact of testosterone assay standardization efforts assessed via accuracy-based proficiency testing. Cao Zhimin, Julianne Cook Botelho, Robert Rej, Hubert Vesper, and J Rex Astles Clinical biochemistry 2019 Mar |
| New filovirus disease classification and nomenclature. Jens H Kuhn, Takuya Adachi, Neill K J Adhikari, Jose R Arribas, Ibrahima Elhadj Bah, Daniel G Bausch, Nahid Bhadelia, Matthias Borchert, Arne Broch Brantsæter, David M Brett-Major, Timothy H Burgess, Daniel S Chertow, Christopher G Chute, Theodore J Cieslak, Robert Colebunders, Ian Crozier, Richard T Davey, Hilde De Clerck, Rafael Delgado, Laura Evans, Mosoka Fallah, William A Fischer, Tom E Fletcher, Robert A Fowler, Thomas Grünewald, Andy Hall, Angela Hewlett, Andy I M Hoepelman, Catherine F Houlihan, Giuseppe Ippolito, Shevin T Jacob, Michael Jacobs, Robert Jakob, Frederique A Jacquerioz, Laurent Kaiser, Andre C Kalil, Rashidatu F Kamara, Jimmy Kapetshi, Hans-Dieter Klenk, Gary Kobinger, Mark G Kortepeter, Colleen S Kraft, Thomas Kratz, Henry S Kyobe Bosa, Marta Lado, François Lamontagne, H Cliff Lane, Leslie Lobel, Julius Lutwama, G Marshall Lyon, Moses B F Massaquoi, Thomas A Massaquoi, Aneesh K Mehta, Vital Mondonge Makuma, Srinivas Murthy, Tonny Seikikongo Musoke, Jean-Jacques Muyembe-Tamfum, Phiona Nakyeyune, Carolina Nanclares, Miriam Nanyunja, Justus Nsio-Mbeta, Tim O'Dempsey, Janusz T Paweska, Clarence J Peters, Peter Piot, Christophe Rapp, Bertrand Renaud, Bruce Ribner, Pardis C Sabeti, John S Schieffelin, Werner Slenczka, Moses J Soka, Armand Sprecher, James Strong, Robert Swanepoel, Timothy M Uyeki, Michel Van Herp, Pauline Vetter, David A Wohl, Timo Wolf, Anja Wolz, Alie H Wurie, and Zabulon Yoti Nature reviews. Microbiology 2019 Mar |
| Chief Complaint Classification with Recurrent Neural Networks. Scott H Lee, Drew Levin, Patrick D Finley, and Charles M Heilig Journal of biomedical informatics 2019 Mar 103158 |
| Plasmodium falciparum (Haemosporodia: Plasmodiidae) and O'nyong-nyong Virus Development in a Transgenic Anopheles gambiae (Diptera: Culicidae) Strain. John D Mumford, Carole A Long, Scott C Weaver, Katzutoyo Miura, Eryu Wang, Rachel Rotenberry, Ellen M Dotson, and Mark Q Benedict Journal of medical entomology 2019 Mar |
| Effect of Plasmodium falciparum sulfadoxine-pyrimethamine resistance on the effectiveness of intermittent preventive therapy for malaria in pregnancy in Africa: a systematic review and meta-analysis. Anna Maria van Eijk, David A Larsen, Kassoum Kayentao, Gibby Koshy, Douglas E C Slaughter, Cally Roper, Lucy C Okell, Meghna Desai, Julie Gutman, Carole Khairallah, Stephen J Rogerson, Carol Hopkins Sibley, Steven R Meshnick, Steve M Taylor, and Feiko O ter Kuile The Lancet. Infectious diseases 2019 Mar |
| Identification of CP77 as the third orthopoxvirus SAMD9 and SAMD9L inhibitor with a unique specificity for a rodent SAMD9L. Fushun Zhang, Xiangzhi Meng, Michael B Townsend, Panayampalli Subbian Satheshkumar, and Yan Xiang Journal of virology 2019 Mar |
| Emergence of Neisseria gonorrhoeae Strains Harboring a Novel Combination of Azithromycin-Attenuating Mutations. Cau D Pham, Samera Sharpe, Karen Schlanger, Sancta St Cyr, Justin Holderman, Richard Steece, Olusegun O Soge, Godfred Masinde, Janet Arno, Matthew Schmerer, Ellen N Kersh, and Antimicrobial agents and chemotherapy 2019 Apr (4) |
| Field evaluation of malaria malachite green loop-mediated isothermal amplification in health posts in Roraima state, Brazil. Heather M Kudyba, Jaime Louzada, Dragan Ljolje, Karl A Kudyba, Vasant Muralidharan, Joseli Oliveira-Ferreira, and Naomi W Lucchi Malaria journal 2019 Mar 18(1) 98 |
| Efficacy and safety of artemether-lumefantrine for the treatment of uncomplicated malaria and prevalence of Pfk13 and Pfmdr1 polymorphisms after a decade of using artemisinin-based combination therapy in mainland Tanzania. Deus S Ishengoma, Celine I Mandara, Filbert Francis, Eldin Talundzic, Naomi W Lucchi, Billy Ngasala, Abdunoor M Kabanywanyi, Muhidin K Mahende, Erasmus Kamugisha, Reginald A Kavishe, Florida Muro, Ally Mohamed, Renata Mandike, Sigsbert Mkude, Frank Chacky, Lynn Paxton, George Greer, Chonge A Kitojo, Ritha Njau, Troy Martin, Meera Venkatesan, Marian Warsame, Eric S Halsey, and Venkatachalam Udhayakumar Malaria journal 2019 Mar (1) 88 |
| Challenges and clinical relevance of molecular detection of Bordetella pertussis in South Africa. Fahima Moosa, Mignon du Plessis, Nicole Wolter, Maimuna Carrim, Cheryl Cohen, Claire von Mollendorf, Sibongile Walaza, Stefano Tempia, Halima Dawood, Ebrahim Variava, and Anne von Gottberg BMC infectious diseases 2019 Mar 19(1) 276 |
| The sixth vital sign: what reproduction tells us about overall health. Proceedings from a NICHD/CDC workshop. Marcelle I Cedars, Susan E Taymans, Louis V DePaolo, Lee Warner, Stuart B Moss, and Michael L Eisenberg Human reproduction open 2017 2017(2) hox008 |
| Universal human papillomavirus typing by whole genome sequencing following target enrichment: evaluation of assay reproducibility and limit of detection. Tengguo Li, Elizabeth R Unger, and Mangalathu S Rajeevan BMC genomics 2019 Mar (1) 231 |
| Identifying Areas with Disproportionate Local Health Department Services Relative to Opioid Overdose, HIV and Hepatitis C Diagnosis Rates: A Study of Rural Illinois. Colleen McLuckie, Mai T Pho, Kaitlin Ellis, Livia Navon, Kelly Walblay, Wiley D Jenkins, Christofer Rodriguez, Marynia A Kolak, Yen-Tyng Chen, John A Schneider, and Whitney E Zahnd International journal of environmental research and public health 2019 Mar 16(6) |
| Comparison of msp genotyping and a 24 SNP molecular assay for differentiating Plasmodium falciparum recrudescence from reinfection. Joseph Fulakeza, Sarah McNitt, Jimmy Vareta, Alex Saidi, Godfrey Mvula, Terrie Taylor, Don P Mathanga, Dylan S Small, Jacek Skarbinski, Julie R Gutman, and Karl Seydel Malaria journal 2019 Mar 18(1) 84 |
| Building the framework for standardized clinical laboratory reporting of next generation sequencing data for resistance-associated mutations in Mycobacterium tuberculosis complex. Jeffrey A Tornheim, Angela M Starks, Timothy C Rodwell, Jennifer L Gardy, Timothy M Walker, Daniela M Cirillo, Lakshmi Jayashankar, Paolo Miotto, Matteo Zignol, and Marco Schito Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2019 Mar |
| Marburg virus disease outbreak in Kween District Uganda, 2017: Epidemiological and laboratory findings. Luke Nyakarahuka, Trevor R Shoemaker, Stephen Balinandi, Godfrey Chemos, Benon Kwesiga, Sophia Mulei, Jackson Kyondo, Alex Tumusiime, Aaron Kofman, Ben Masiira, Shannon Whitmer, Shelley Brown, Debi Cannon, Cheng-Feng Chiang, James Graziano, Maria Morales-Betoulle, Ketan Patel, Sara Zufan, Innocent Komakech, Nasan Natseri, Philip Musobo Chepkwurui, Bernard Lubwama, Jude Okiria, Joshua Kayiwa, Innocent H Nkonwa, Patricia Eyu, Lydia Nakiire, Edward Chelangat Okarikod, Leonard Cheptoyek, Barasa Emmanuel Wangila, Michael Wanje, Patrick Tusiime, Lilian Bulage, Henry G Mwebesa, Alex R Ario, Issa Makumbi, Anne Nakinsige, Allan Muruta, Miriam Nanyunja, Jaco Homsy, Bao-Ping Zhu, Lisa Nelson, Pontiano Kaleebu, Pierre E Rollin, Stuart T Nichol, John D Klena, and Julius J Lutwama PLoS neglected tropical diseases 2019 Mar (3) e0007257 |
| Genomic Survey of Bordetella pertussis Diversity, United States, 2000-2013. Michael R Weigand, Margaret M Williams, Yanhui Peng, Dane Kania, Lucia C Pawloski, Maria L Tondella, and Emerging infectious diseases 2019 Apr (4) 780-783 |
| Applied Epidemiology Training Needs for the Modern Epidemiologist. Diana M Bensyl, Michael E King, and Ashley Greiner American journal of epidemiology 2019 Mar |
| Swine-origin H1 influenza viruses isolated from humans exhibit sustained infectivity in an aerosol state. Joanna A Pulit-Penaloza, Jessica A Belser, Terrence M Tumpey, and Taronna R Maines Applied and environmental microbiology 2019 Mar |
| Prevalence and genetic diversity of viral gastroenteritis viruses in children younger than 5 years of age in Guatemala, 2014-2015. Marta Diez-Valcarce, Maria Renee Lopez, Beatriz Lopez, Oneida Morales, Manuel Sagastume, Loren Cadena, Susan Kaydos-Daniels, Claudia Jarquin, John P McCracken, Joe P Bryan, and Jan Vinjé Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2019 Mar 1146-11 |
| Transcriptome profiling of Plasmodium vivax in Saimiri monkeys identifies potential ligands for invasion. Karthigayan Gunalan, Juliana M Sá, Roberto R Moraes Barros, Sarah L Anzick, Ramoncito L Caleon, J Patrick Mershon, Kishore Kanakabandi, Monica Paneru, Kimmo Virtaneva, Craig Martens, John W Barnwell, Jose M Ribeiro, and Louis H Miller Proceedings of the National Academy of Sciences of the United States of America 2019 Mar |
| Diagnostic Methods Used to Classify Confirmed and Probable Cases of Spotted Fever Rickettsioses - United States, 2010-2015. Alison M Binder, Kristen Nichols Heitman, and Naomi A Drexler MMWR. Morbidity and mortality weekly report 2019 Mar 68(10) 243-246 |
| Notes from the Field: HIV Diagnoses Among Persons Who Inject Drugs - Northeastern Massachusetts, 2015-2018. Kevin Cranston, Charles Alpren, Betsey John, Erica Dawson, Kathleen Roosevelt, Amanda Burrage, Janice Bryant, William M Switzer, Courtney Breen, Philip J Peters, Tracy Stiles, Ashley Murray, H Dawn Fukuda, William Adih, Linda Goldman, Nivedha Panneer, Barry Callis, Ellsworth M Campbell, Liisa Randall, Anne Marie France, R Monina Klevens, Sheryl Lyss, Shauna Onofrey, Christine Agnew-Brune, Michael Goulart, Hongwei Jia, Matthew Tumpney, Paul McClung, Sharoda Dasgupta, Danae Bixler, Kischa Hampton, , Jenifer Leaf Jaeger, Kate Buchacz, and Alfred DeMaria MMWR. Morbidity and mortality weekly report 2019 Mar (10) 253-254 |
| Introduction of Ebola virus into a remote border district of Sierra Leone, 2014: use of field epidemiology and RNA sequencing to describe chains of transmission. M B DeSilva, T Styles, C Basler, F L Moses, F Husain, M Reichler, S Whitmer, J McAuley, E Belay, M Friedman, I S Muoghalu, P Swaray, U Ströher, and J T Redd Epidemiology and infection 2019 Jan e88 |
| An epidemic of chikungunya in northwestern Bangladesh in 2011. Farhana Haque, Mahmudur Rahman, Nuzhat Nasreen Banu, Ahmad Raihan Sharif, Shamim Jubayer, Akm Shamsuzzaman, Asm Alamgir, Jesse H Erasmus, Hilda Guzman, Naomi Forrester, Stephen P Luby, and Emily S Gurley PloS one 2019 14(3) e0212218 |
| Carbon nanotubes and crystalline silica stimulate robust ROS production, inflammasome activation, and IL-1? secretion in macrophages to induce myofibroblast transformation. Bridget Hindman, and Qiang Ma Archives of toxicology 2019 Mar |
| Phylogenetic relationships and regional spread of meningococcal strains in the meningitis belt, 2011-2016. Nadav Topaz, Dominique A Caugant, Muhamed-Kheir Taha, Ola Brønstad Brynildsrud, Nadia Debech, Eva Hong, Ala-Eddine Deghmane, Rasmata Ouédraogo, Sani Ousmane, Kadidja Gamougame, Berthe-Marie Njanpop-Lafourcade, Seydou Diarra, LeAnne M Fox, and Xin Wang EBioMedicine 2019 Mar |
| Metabolomic Insights into Human Arboviral Infections: Dengue, Chikungunya, and Zika Viruses. Nathaniel M Byers, Amy C Fleshman, Rushika Perera, and Claudia R Molins Viruses 2019 Mar 11(3) |
| Update on Vaccine-Derived Poliovirus Outbreaks - Democratic Republic of the Congo and Horn of Africa, 2017-2018. Chukwuma Mbaeyi, Mary M Alleman, Derek Ehrhardt, Eric Wiesen, Cara C Burns, Hongmei Liu, Raimi Ewetola, Lerato Seakamela, Rennatus Mdodo, Modjirom Ndoutabe, Pierre Kandolo Wenye, Yogolelo Riziki, Peter Borus, Christopher Kamugisha, and Steven G F Wassilak MMWR. Morbidity and mortality weekly report 2019 Mar (9) 225-230 |
| HCV transmission in high-risk communities in Bulgaria. Lilia Ganova-Raeva, Zoya Dimitrova, Ivailo Alexiev, Lili Punkova, Amanda Sue, Guo-Liang Xia, Anna Gancheva, Reneta Dimitrova, Asya Kostadinova, Elitsa Golkocheva-Markova, and Yury Khudyakov PloS one 2019 14(3) e0212350 |
| PacBio Genome Sequences of Eight Escherichia albertii Strains Isolated from Humans in the United States. Rebecca L Lindsey, Lori A Rowe, Dhwani Batra, Peyton Smith, and Nancy A Strockbine Microbiology resource announcements 2019 Feb 8(9) |
| Discovery and Characterization of Bukakata orbivirus ( Reoviridae:Orbivirus ), a Novel Virus from a Ugandan Bat. Anna C Fagre, Justin S Lee, Robert M Kityo, Nicholas A Bergren, Eric C Mossel, Teddy Nakayiki, Betty Nalikka, Luke Nyakarahuka, Amy T Gilbert, Julian Kerbis Peterhans, Mary B Crabtree, Jonathan S Towner, Brian R Amman, Tara K Sealy, Amy J Schuh, Stuart T Nichol, Julius J Lutwama, Barry R Miller, and Rebekah C Kading Viruses 2019 Mar 11(3) |
| First report of the genomic characterization of rubella viruses circulating in Cameroon. Franck-Martin Obam Mekanda, Chavely Gwladys Monamele, Frédy Brice Simo Nemg, Francine Berlange Sado Yousseu, Dieudonné Ndjonka, Anfumbom Kitu Womeyi Kfutwah, Emily Abernathy, and Maurice Demanou Journal of medical virology 2019 Mar |
| Sowing the Seeds of a Pandemic? Mammalian Pathogenicity and Transmissibility of H1 Variant Influenza Viruses from the Swine Reservoir. Joanna A Pulit-Penaloza, Jessica A Belser, Terrence M Tumpey, and Taronna R Maines Tropical medicine and infectious disease 2019 Feb 4(1) |
| Culture of Clinical Specimens Reveals Extensive Diversity of Legionella pneumophila Strains in Arizona. Brian H Raphael, Trung Huynh, Ellen Brown, Jessica C Smith, Irene Ruberto, Linda Getsinger, Stacy White, and Jonas M Winchell mSphere 2019 Feb 4(1) |
| Use of FTA® cards to transport throat swabs and oral fluid samples for molecular detection and genotyping of measles and rubella viruses. Bettina Bankamp, Carolyn Sein, Elisabeth Pukuta Simbu, Raydel Anderson, Emily Abernathy, Min-Hsin Chen, Jean-Jacques Muyembe Tamfum, Kathleen A Wannemuehler, Diane Waku-Kouomou, Elena N Lopareva, Joseph P Icenogle, Paul A Rota, and James L Goodson Journal of clinical microbiology 2019 Feb |
| Evaluation of the MicroScan Colistin Well and Gradient Diffusion Strips for Colistin Susceptibility Testing in Enterobacteriaceae . Joseph D Lutgring, Anny Kim, Davina Campbell, Maria Karlsson, Allison C Brown, and Eileen M Burd Journal of clinical microbiology 2019 Feb |
| Insights into the antigenic advancement of influenza A(H3N2) viruses, 2011-2018. Patricia A Jorquera, Vasiliy P Mishin, Anton Chesnokov, Ha T Nguyen, Brian Mann, Rebecca Garten, John Barnes, Erin Hodges, Juan De La Cruz, Xiyan Xu, Jackie Katz, David E Wentworth, and Larisa V Gubareva Scientific reports 2019 Feb 9(1) 2676 |
| Complete Genome Sequences of Human Astrovirus Prototype Strains (Types 1 to 8). Christina J Castro, Emily Reynolds, Stephan S Monroe, Rachel L Marine, and Jan Vinjé Microbiology resource announcements 2019 Feb (7) |
| Near-Complete Human Sapovirus Genome Sequences from Kenya. Marta Diez-Valcarce, Anna Montmayeur, Roman Tatusov, and Jan Vinjé Microbiology resource announcements 2019 Feb (7) |
| Respiratory Illness Associated With Emergent Human Adenovirus Genome Type 7d, New Jersey, 2016-2017. Marie E Killerby, Faye Rozwadowski, Xiaoyan Lu, Mardea Caulcrick-Grimes, Lisa McHugh, Ann Marie Haldeman, Tara Fulton, Eileen Schneider, Senthilkumar K Sakthivel, Julu Bhatnagar, Demi B Rabeneck, Sherif Zaki, Susan I Gerber, and John T Watson Open forum infectious diseases 2019 Feb 6(2) ofz017 |
| Utility of Whole-Genome Sequencing to Ascertain Locally Acquired Cases of Coccidioidomycosis, Washington, USA. Hanna N Oltean, Kizee A Etienne, Chandler C Roe, Lalitha Gade, Orion Z McCotter, David M Engelthaler, and Anastasia P Litvintseva Emerging infectious diseases 2019 Mar (3) 501-506 |
| Genomic Analysis of Cardiac Surgery-Associated Mycobacterium chimaera Infections, United States. Nabeeh A Hasan, L Elaine Epperson, Adrian Lawsin, Rachael R Rodger, Kiran M Perkins, Alison Laufer Halpin, K Allison Perry, Heather Moulton-Meissner, Daniel J Diekema, Matthew B Crist, Joseph F Perz, Max Salfinger, Charles L Daley, and Michael Strong Emerging infectious diseases 2019 Mar (3) 559-563 |
| Evidence of Recent Genomic Evolution in Gonococcal Strains with Decreased Susceptibility to Cephalosporins or Azithromycin in the United States, 2014-2016. Jesse C Thomas, Sandra Seby, A Jeanine Abrams, Jack Cartee, Sean Lucking, Eshaw Vidyaprakash, Matthew Schmerer, Cau D Pham, Jaeyoung Hong, Elizabeth Torrone, Sancta St Cyr, William M Shafer, Kyle Bernstein, Ellen N Kersh, Kim M Gernert, and The Journal of infectious diseases 2019 Feb |
| A Novel Approach to Dysmorphology to Enhance the Phenotypic Classification of Autism Spectrum Disorder in the Study to Explore Early Development. Stuart K Shapira, Lin H Tian, Arthur S Aylsworth, Ellen R Elias, Julie E Hoover-Fong, Naomi J L Meeks, Margaret C Souders, Anne C-H Tsai, Elaine H Zackai, Aimee A Alexander, Marshalyn Yeargin-Allsopp, and Laura A Schieve Journal of autism and developmental disorders 2019 Feb |
| Outbreak of respiratory illness associated with human adenovirus type 7 among persons attending Officer Candidates School, Quantico, Virginia, 2017. Jennifer Bautista-Gogel, Clifford M Madsen, Xiaoyan Lu, Senthilkumar K Sakthivel, Irma Froh, Edwin Kamau, Susan I Gerber, John T Watson, Sarah S Cooper, and Eileen Schneider The Journal of infectious diseases 2019 Feb |
| The Special Pathogens Research Network: Enabling Research Readiness. Colleen S Kraft, Mark G Kortepeter, Bruce Gordon, Lauren M Sauer, Erica S Shenoy, Daniel P Eiras, LuAnn Larson, Jennifer A Garland, Aneesh K Mehta, Kevin Barrett, Connie S Price, Caroline Croyle, Lauren R West, Brooke Noren, Susan Kline, Christa Arguinchona, Henry Arguinchona, Jonathan D Grein, Chad Connally, Susan McLellan, George F Risi, Timothy M Uyeki, Richard T Davey, Jo Ellen Schweinle, Michelle M Schwedhelm, Melissa Harvey, Richard C Hunt, and Christopher J Kratochvil Health security 17(1) 35-45 |
| A unique insight into the MiRNA profile during genital chlamydial infection. Ifeyinwa Benyeogor, Tankya Simoneaux, Yuehao Wu, Stephanie Lundy, Zenas George, Khamia Ryans, Danielle McKeithen, Roshan Pais, Debra Ellerson, W Walter Lorenz, Tolulope Omosun, Winston Thompson, Francis O Eko, Carolyn M Black, Uriel Blas-Machado, Joseph U Igietseme, Qing He, and Yusuf Omosun BMC genomics 2019 Feb (1) 143 |
| Strengthening laboratory surveillance of viral pathogens: Experiences and lessons learned building next-generation sequencing capacity in Ghana. Rachel L Marine, Nana Afia Asante Ntim, Christina J Castro, Keren O Attiku, Deborah Pratt, Ewurabena Duker, Esinam Agbosu, Terry Fei Fan Ng, Wangeci Gatei, Evangeline Obodai, John Kofi Odoom, Chastity L Walker, Paul A Rota, M Steven Oberste, William Kwabena Ampofo, and S Arunmozhi Balajee International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 2019 Feb |
| Healthcare provider diagnostic testing practices for identification of Clostridioides (Clostridium) difficile in children: an Emerging Infections Network survey. Larry K Kociolek, Preeta K Kutty, Philip M Polgreen, and Susan E Beekmann Infection control and hospital epidemiology 2019 Feb 1-5 |
| Ten years of Genome Medicine. Charles Auffray, Julian L Griffin, Muin J Khoury, James R Lupski, and Matthias Schwab Genome medicine 2019 Feb 11(1) 7 |
| Next-Generation Sequencing of Infectious Pathogens. Marta Gwinn, Duncan MacCannell, and Gregory L Armstrong JAMA 2019 Feb |
| Effect of Age, High-Fat Diet, and Rat Strain on Serum Biomarkers and Telomere Length and Global DNA Methylation in Peripheral Blood Mononuclear Cells. James M Antonini, Vamsi Kodali, Terence G Meighan, Katherine A Roach, Jenny R Roberts, Rebecca Salmen, Greg R Boyce, Patti C Zeidler-Erdely, Michael Kashon, Aaron Erdely, and Mohammad Shoeb Scientific reports 2019 Feb 9(1) 1996 |
| Insights into the Unique Nature of the East Asian Clade of the Emerging Pathogenic Yeast, Candida auris . Rory M Welsh, D Joseph Sexton, Kaitlin Forsberg, Snigdha Vallabhaneni, and Anastasia Litvintseva Journal of clinical microbiology 2019 Feb |
| Development of a standardized Sanger-based method for partial sequencing and genotyping dengue viruses. Gilberto A Santiago, Glenda L González, Fabiola Cruz-López, and Jorge L Muñoz-Jordan Journal of clinical microbiology 2019 Feb |
| Exome-wide association of deltamethrin resistance in Aedes aegypti from Mexico. Karla Saavedra-Rodriguez, Corey L Campbell, Audrey Lenhart, Patricia Penilla, Saul Lozano-Fuentes, and William C Black Insect molecular biology 2019 Feb |
| Using deep learning to identify translational research in genomic medicine beyond bench to bedside. Yi-Yu Hsu, Mindy Clyne, Chih-Hsuan Wei, Muin J Khoury, and Zhiyong Lu Database : the journal of biological databases and curation 2019 Jan 2019 |
| First Draft Genome Sequence of Leishmania (Viannia) lainsoni Strain 216-34, Isolated from a Peruvian Clinical Case. Wuling Lin, Dhwani Batra, Vidhya Narayanan, Lori A Rowe, Mili Sheth, Yueli Zheng, Phalasy Juieng, Vladimir Loparev, and Marcos de Almeida Microbiology resource announcements 2019 Feb (6) |
| Conjugal Transfer, Whole Genome Sequencing, and Plasmid Analysis of Four mcr-1 -bearing Isolates from U.S. Patients. Wenming Zhu, Adrian Lawsin, Rebecca L Lindsey, Dhwani Batra, Kristen Knipe, Brian B Yoo, K Allison Perry, Lori A Rowe, David Lonsway, Maroya S Waters, J Kamile Rasheed, and Alison Laufer Halpin Antimicrobial agents and chemotherapy 2019 Feb |
| Comparison of FTD® respiratory pathogens 33 and a singleplex CDC assay for the detection of respiratory viruses: A study from Cameroon. Sebastien Kenmoe, Clarisse Tcharnenwa, Gwladys C Monamele, Cyprien Nde Kengne, Mohamadou Njankouo Ripa, Brett Whitaker, Karen A Alroy, S Arunmozhi Balajee, and Richard Njouom Diagnostic microbiology and infectious disease 2019 Jan |
| Platforms and Analytical Tools Used in Nucleic Acid Sequence-Based Microbial Genotyping Procedures. Duncan MacCannell Microbiology spectrum 2019 Jan (1) |
| Impact of long-term storage of clinical samples collected from 1996 to 2017 on RT-PCR detection of norovirus. Jennifer L Cannon, Marian Baker, Leslie Barclay, and Jan Vinjé Journal of virological methods 2019 Feb |
| Large-cage assessment of a transgenic sex-ratio distortion strain on populations of an African malaria vector. Luca Facchinelli, Ace R North, C Matilda Collins, Miriam Menichelli, Tania Persampieri, Alessandro Bucci, Roberta Spaccapelo, Andrea Crisanti, and Mark Q Benedict Parasites & vectors 2019 Feb 12(1) 70 |
| Draft Genome Sequence of a Clostridium botulinum Isolate from Thailand Harboring the Subtype bont /B8 Gene. Jessica L Halpin, Piyada Wangroongsarb, Chutima Jittaprasartsin, Janet K Dykes, and Carolina Lúquez Microbiology resource announcements 2019 Jan (5) |
| miRNA-378a as a key regulator of cardiovascular health following engineered nanomaterial inhalation exposure. Quincy A Hathaway, Andrya J Durr, Danielle L Shepherd, Mark V Pinti, Ashley N Brandebura, Cody E Nichols, Amina Kunovac, William T Goldsmith, Sherri A Friend, Alaeddin B Abukabda, Garrett K Fink, Timothy R Nurkiewicz, and John M Hollander Nanotoxicology 2019 Feb 1-20 |
| Evaluation of Multilocus Sequence Typing of Cyclospora cayetanensis based on microsatellite markers. Jessica N Hofstetter, Fernanda S Nascimento, Subin Park, Shannon Casillas, Barbara L Herwaldt, Michael J Arrowood, and Yvonne Qvarnstrom Parasite (Paris, France) 2019 3 |
| Draft Genome Sequences for Dual-Toxin-Producing Clostridium botulinum Strains. Jessica L Halpin, Janet K Dykes, and Carolina Lúquez Microbiology resource announcements 2019 Jan (4) |
| PCR-based method for S. flexneri serotyping: International Multicenter Validation. Silvina P Brengi, Qiangzheng Sun, Hilda Bolaños, Francisco Duarte, Claire Jenkins, Mariana Pichel, Mohammad Shahnaij, Evangeline G Sowers, Nancy Strockbine, Kaisar A Talukder, Gordana Derado, María Rosa Viñas, Kai Man Kam, and Jianguo Xu Journal of clinical microbiology 2019 Jan |
| Contrasting patterns of gene expression indicate differing pyrethroid resistance mechanisms across the range of the New World malaria vector Anopheles albimanus. Lucy Mackenzie-Impoinvil, Gareth D Weedall, Juan C Lol, Jesús Pinto, Lucrecia Vizcaino, Nicole Dzuris, Jacob Riveron, Norma Padilla, Charles Wondji, and Audrey Lenhart PloS one 2019 (1) e0210586 |
| Vgsc-interacting proteins are genetically associated with pyrethroid resistance in Aedes aegypti. Corey L Campbell, Karla Saavedra-Rodriguez, Tristan D Kubik, Audrey Lenhart, Saul Lozano-Fuentes, and William C Black PloS one 2019 14(1) e0211497 |
| Precision Medicine vs Preventive Medicine. Muin J Khoury JAMA 2019 321(4) 406 |
| Coccidioides ecology and genomics. Bridget M Barker, Anastasia P Litvintseva, Meritxell Riquelme, and Lluvia Vargas-Gastélum Medical mycology 2019 Feb (Supplement_1) S21-S29 |
| Update on the Epidemiology of coccidioidomycosis in the United States. Orion Z McCotter, Kaitlin Benedict, David M Engelthaler, Ken Komatsu, Kimberley D Lucas, Janet C Mohle-Boetani, Hanna Oltean, Duc Vugia, Tom M Chiller, Gail L Sondermeyer Cooksey, Alyssa Nguyen, Chandler C Roe, Charlotte Wheeler, and Rebecca Sunenshine Medical mycology 2019 Feb 57(Supplement_1) S30-S40 |
| Draft Genome Sequences of Eight Vibrio sp. Clinical Isolates from across the United States That Form a Basal Sister Clade to Vibrio cholerae. Kevin Liang, Mohammad Tarequl Islam, Nora Hussain, Nathan S Winkjer, Monica S Im, Lori A Rowe, Cheryl L Tarr, and Yan Boucher Microbiology resource announcements 2019 Jan 8(3) |
| Complete Genome Sequence of Nocardia farcinica W6977 T Obtained by Combining Illumina and PacBio Reads. Christopher A Gulvik, Robert A Arthur, Ben W Humrighouse, Dhwani Batra, Lori A Rowe, Brent A Lasker, and John R McQuiston Microbiology resource announcements 2019 Jan (3) |
| Initiation of Pulmonary Fibrosis after Silica Inhalation in Rats is linked with Dysfunctional Shelterin Complex and DNA Damage Response. Mohammad Shoeb, Gul M Mustafa, Pius Joseph, Christina Umbright, Vamsi Kodali, Katherine A Roach, Terence Meighan, Jenny R Roberts, Aaron Erdely, and James M Antonini Scientific reports 2019 Jan 9(1) 471 |
| Notes from the Field: Outbreak of Listeriosis Likely Associated with Prepackaged Caramel Apples - United States, 2017. Jessica R Marus, Sally Bidol, Shana M Altman, Oluwakemi Oni, Nicole Parker-Strobe, Mark Otto, Evelyn Pereira, Annemarie Buchholz, Jasmine Huffman, Amanda R Conrad, and Matthew E Wise MMWR. Morbidity and mortality weekly report 2019 01 (3) 76-77 |
| First Laboratory-Confirmed Outbreak of Human and Animal Rift Valley Fever Virus in Uganda in 48 Years. Trevor R Shoemaker, Luke Nyakarahuka, Stephen Balinandi, Joseph Ojwang, Alex Tumusiime, Sophia Mulei, Jackson Kyondo, Bernard Lubwama, Musa Sekematte, Annemarion Namutebi, Patrick Tusiime, Fred Monje, Martin Mayanja, Steven Ssendagire, Melissa Dahlke, Simon Kyazze, Milton Wetaka, Issa Makumbi, Jeff Borchert, Sara Zufan, Ketan Patel, Shannon Whitmer, Shelley Brown, William G Davis, John D Klena, Stuart T Nichol, Pierre E Rollin, and Julius Lutwama The American journal of tropical medicine and hygiene 2019 Jan |
| Streptococcus infantis, Streptococcus mitis , and Streptococcus oralis Strains With Highly Similar cps5 Loci and Antigenic Relatedness to Serotype 5 Pneumococci. Fabiana Pimenta, Robert E Gertz, So Hee Park, Ellie Kim, Iaci Moura, Jennifer Milucky, Nadine Rouphael, Monica M Farley, Lee H Harrison, Nancy M Bennett, Godfrey Bigogo, Daniel R Feikin, Robert Breiman, Fernanda C Lessa, Cynthia G Whitney, Gowrisankar Rajam, Jarad Schiffer, Maria da Gloria Carvalho, and Bernard Beall Frontiers in microbiology 2018 3199 |
| Assessing baloxavir susceptibility of influenza viruses circulating in the United States during the 2016/17 and 2017/18 seasons. Larisa V Gubareva, Vasiliy P Mishin, Mira C Patel, Anton Chesnokov, Ha T Nguyen, Juan De La Cruz, Sarah Spencer, Angela P Campbell, Mallory Sinner, Heather Reid, Rebecca Garten, Jackie M Katz, Alicia M Fry, John Barnes, and David E Wentworth Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2019 Jan (3) |
| Group A Streptococcus outbreak among residents and employees of two skilled nursing facilities: North Carolina, 2017. Katie J Palladino, Tammra Morrison, Sopio Chochua, Lori Bowers, and Jennifer K MacFarquhar American journal of infection control 2019 Jan |
| Genetic Meningococcal Antigen Typing System (gMATS): A genotyping tool that predicts 4CMenB strain coverage worldwide. Alessandro Muzzi, Alessandro Brozzi, Laura Serino, Margherita Bodini, Raquel Abad, Dominique Caugant, Maurizio Comanducci, Ana Paula Lemos, Maria Cecilia Gorla, Pavla Krížová, Claudia Mikula, Robert Mulhall, Michael Nissen, Hanna Nohynek, Maria João Simões, Anna Skoczynska, Paola Stefanelli, Muhamed-Kheir Taha, Maija Toropainen, Georgina Tzanakaki, Kumaran Vadivelu-Pechai, Philip Watson, Julio A Vazquez, Gowrisankar Rajam, Rino Rappuoli, Ray Borrow, and Duccio Medini Vaccine 2019 Feb 37(7) 991-1000 |
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