CDC-Authored Genomics and Precision Health Publications Database
Last data update: Aug 15, 2025. (Total: 6773 publications)
| Query Trace: Padilla J[original query] |
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| Annual (2024) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota)
Kuhn JH , Adkins S , Alkhovsky Альховский Сергей Владимирович SV , An 安雯霞 W , Avšič-Županc T , Ayllón MA , Bačnik K , Bahl J , Balkema-Buschmann A , Ballinger MJ , Beer M , Bejerman N , Bergeron É , Biedenkopf N , Blair CD , Blasdell KR , Bradfute SB , Briese T , Brown K , Brown PA , Buchholz UJ , Buchmeier MJ , Bukreyev A , Burt F , Calisher CH , Calvelage S , Cao 曹孟籍 M , Casas I , Chabi-Jesus C , Chandran K , Charrel RN , Crane A , Cuypers LN , Bó ED , de la Torre JC , de Souza WM , de Swart RL , Debat HJ , Dheilly NM , Di Paola N , Di Serio F , Dietzgen RG , Digiaro M , Drexler JF , Duprex WP , Dürrwald R , Easton AJ , Elbeaino T , Ergünay K , Eshak MIY , Feng 冯国忠 G , Firth AE , Fooks AR , Formenty PBH , Freitas-Astúa J , Freuling CM , Gadd T , Gago-Zachert S , García ML , García-Sastre A , Garrison AR , Goldberg TL , Gonzalez JJ , Goüy de Bellocq J , Griffiths A , Groschup MH , Gryseels S , Gutiérrez-Aguirre I , Günther S , Hammond J , Hepojoki J , Horie 堀江真行 M , Hume AJ , Hyndman TH , Höper D , Jiāng 姜道宏 D , Junglen S , Klempa B , Klingström J , Kondō 近藤秀樹 H , Koonin EV , Krupovic M , Kubota 久保田健嗣 K , Kurath G , Kutnjak D , Laenen L , Lambert AJ , Lee B , Li 李呈宇 C , Lǐ 李建荣 J , Li 李俊敏 JM , Lukashevich IS , Maes P , Marklewitz M , Marshall SH , Marzano SL , McCauley JW , Mehle N , Mirazimi A , Morikawa 守川俊幸 T , Mühlberger E , Müller T , Naidu R , Natsuaki 夏秋知英 T , Navarro B , Navarro JA , Neriya 煉谷裕太朗 Y , Netesov Нетёсов Сергей Викторович SV , Nicoloso VM , Neumann G , Nokireki T , Nowotny N , Nunes MRT , Ochoa-Corona FM , Palacios G , Pallás V , Papa Άννα Παπά A , Paraskevopoulou Σοφία Παρασκευοπούλου S , Parrish CR , Pauvolid-Corrêa A , Pecman A , Pérez DR , Pfaff F , Plemper RK , Postler TS , Radoshitzky SR , Ramos-González PL , Ravnikar M , Resende RO , Reuter G , Reyes CA , Rivarez MPS , Romanowski V , Rubbenstroth D , Rubino L , Runstadler JA , Ruiz-Padilla A , Sabanadzovic S , Salvato MS , Sasaya 笹谷孝英 IT , Schmaljohn CS , Schmidt-Posthaus H , Schwemmle M , Seljak G , Seuberlich T , Shi 施莽 M , Shimomoto 下元祥史 Y , Simmonds P , Sironi M , Smith DB , Smither S , Song 송진원 JW , Spann KM , Spengler JR , Stenglein MD , Takada 高田礼人 A , Takemura C , Tammiranta N , Tesh RB , Thornburg NJ , Tischler ND , Tomitaka 冨髙保弘 Y , Tomonaga 朝長啓造 K , Tordo N , Turina M , Tzanetakis Ιωάννης Ε Τζανετάκης IE , Vaira AM , van den Hoogen B , Vanmechelen B , Vasilakis Νίκος Βασιλάκης N , Verbeek M , von Bargen S , Vučurović A , Wada 和田治郎 J , Wahl V , Walker PJ , Wang 王飞 F , Whitfield AE , Williams JV , Wolf YI , Yanagisawa 栁澤広宣 H , Yang 杨彩霞 C , Ye 叶恭银 G , Yu 于美春 MC , Zerbini FM , Zhang S , Økland AL , Hughes HR . J Gen Virol 2025 106 (6) |
| Short-Read and Long-Read Whole Genome Sequencing for SARS-CoV-2 Variants Identification
Peng M , Davis ML , Bentz ML , Burgin A , Burroughs M , Padilla J , Nobles S , Unoarumhi Y , Tang K . Viruses 2025 17 (4) 
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| The SARS-CoV-2 test scale-up in the USA: an analysis of the number of tests produced and used over time and their modelled impact on the COVID-19 pandemic
Santos S , Humbard M , Lambrou AS , Lin G , Padilla Y , Chaitram J , Natrajan MS , Kirking HL , Courtney S , Del Guercio K , Roberts S , Gaspar F , Iademarco MF , Hamel J , Salerno RM . Lancet Public Health 2025 10 (1) e47-e57
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| Sentinel Surveillance reveals phylogenetic diversity and detection of linear plasmids harboring vanA and optrA among enterococci collected in the United States
Kent AG , Spicer LM , Campbell D , Breaker E , McAllister GA , Ewing TO , Longo C , Balbuena R , Burroughs M , Burgin A , Padilla J , Johnson JK , Halpin AL , McKay SL , Rasheed JK , Elkins CA , Karlsson M , Lutgring JD , Gargis AS . Antimicrob Agents Chemother 2024 e0059124
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| Diagnostic accuracy of the Abbott BinaxNOW COVID-19 antigen card test, Puerto Rico
Madewell ZJ , Major CG , Graff N , Adams C , Rodriguez DM , Morales T , Medina Lopes NA , Tosado R , Sánchez-González L , Perez-Padilla J , Volkman HR , Bertrán-Pasarell J , Sainz de la Peña D , Munoz-Jordan J , Santiago GA , Lorenzi O , Rivera-Amill V , Rolfes MA , Paz-Bailey G , Adams LE , Wong JM . Influenza Other Respir Viruses 2024 18 (7) e13305 |
| Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing.
Allix-Béguec C , Arandjelovic I , Bi L , Beckert P , Bonnet M , Bradley P , Cabibbe AM , Cancino-Muñoz I , Caulfield MJ , Chaiprasert A , Cirillo DM , Clifton DA , Comas I , Crook DW , De Filippo MR , de Neeling H , Diel R , Drobniewski FA , Faksri K , Farhat MR , Fleming J , Fowler P , Fowler TA , Gao Q , Gardy J , Gascoyne-Binzi D , Gibertoni-Cruz AL , Gil-Brusola A , Golubchik T , Gonzalo X , Grandjean L , He G , Guthrie JL , Hoosdally S , Hunt M , Iqbal Z , Ismail N , Johnston J , Khanzada FM , Khor CC , Kohl TA , Kong C , Lipworth S , Liu Q , Maphalala G , Martinez E , Mathys V , Merker M , Miotto P , Mistry N , Moore DAJ , Murray M , Niemann S , Omar SV , Ong RT , Peto TEA , Posey JE , Prammananan T , Pym A , Rodrigues C , Rodrigues M , Rodwell T , Rossolini GM , Sánchez Padilla E , Schito M , Shen X , Shendure J , Sintchenko V , Sloutsky A , Smith EG , Snyder M , Soetaert K , Starks AM , Supply P , Suriyapol P , Tahseen S , Tang P , Teo YY , Thuong TNT , Thwaites G , Tortoli E , van Soolingen D , Walker AS , Walker TM , Wilcox M , Wilson DJ , Wyllie D , Yang Y , Zhang H , Zhao Y , Zhu B . N Engl J Med 2018 379 (15) 1403-1415 |
| Public Health Response to Clusters of Rapid HIV Transmission Among Hispanic or Latino Gay, Bisexual, and Other Men Who Have Sex with Men - Metropolitan Atlanta, Georgia, 2021-2022.
Saldana C , Philpott DC , Mauck DE , Hershow RB , Garlow E , Gettings J , Freeman D , France AM , Johnson EN , Ajmal A , Elimam D , Reed K , Sulka A , Adame JF , Andía JF , Gutierrez M , Padilla M , Jimenez NG , Hayes C , McClung RP , Cantos VD , Holland DP , Scott JY , Oster AM , Curran KG , Hassan R , Wortley P . MMWR Morb Mortal Wkly Rep 2023 72 (10) 261-264
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| Sentinel Surveillance Reveals Emerging Daptomycin-Resistant ST736 Enterococcus faecium and Multiple Mechanisms of Linezolid Resistance in Enterococci in the United States.
Gargis AS , Spicer LM , Kent AG , Zhu W , Campbell D , McAllister G , Ewing TO , Albrecht V , Stevens VA , Sheth M , Padilla J , Batra D , Johnson JK , Halpin AL , Rasheed JK , Elkins CA , Karlsson M , Lutgring JD . Front Microbiol 2021 12 807398
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| Genomic Surveillance for SARS-CoV-2 Variants: Predominance of the Delta (B.1.617.2) and Omicron (B.1.1.529) Variants - United States, June 2021-January 2022.
Lambrou AS , Shirk P , Steele MK , Paul P , Paden CR , Cadwell B , Reese HE , Aoki Y , Hassell N , Caravas J , Kovacs NA , Gerhart JG , Ng HJ , Zheng XY , Beck A , Chau R , Cintron R , Cook PW , Gulvik CA , Howard D , Jang Y , Knipe K , Lacek KA , Moser KA , Paskey AC , Rambo-Martin BL , Nagilla RR , Rethchless AC , Schmerer MW , Seby S , Shephard SS , Stanton RA , Stark TJ , Uehara A , Unoarumhi Y , Bentz ML , Burhgin A , Burroughs M , Davis ML , Keller MW , Keong LM , Le SS , Lee JS , Madden Jr JC , Nobles S , Owouor DC , Padilla J , Sheth M , Wilson MM , Talarico S , Chen JC , Oberste MS , Batra D , McMullan LK , Halpin AL , Galloway SE , MacCannell DR , Kondor R , Barnes J , MacNeil A , Silk BJ , Dugan VG , Scobie HM , Wentworth DE . MMWR Morb Mortal Wkly Rep 2022 71 (6) 206-211
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| Comprehensive characterization of internal and cuticle surface microbiota of laboratory-reared F Anopheles albimanus originating from different sites.
Dada N , Benedict AC , López F , Lol JC , Sheth M , Dzuris N , Padilla N , Lenhart A . Malar J 2021 20 (1) 414 |
| One-step PCR: A novel protocol for determination of pfhrp2 deletion status in Plasmodium falciparum.
Jones S , Subramaniam G , Plucinski MM , Patel D , Padilla J , Aidoo M , Talundzic E . PLoS One 2020 15 (7) e0236369
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| Cytokine signatures of Plasmodium vivax infection during pregnancy and delivery outcomes.
Dobano C , Bardaji A , Arevalo-Herrera M , Martinez-Espinosa FE , Botto-Menezes C , Padilla N , Menegon M , Kochar S , Kochar SK , Unger H , Ome-Kaius M , Rosanas-Urgell A , Malheiros A , Castellanos ME , Hans D , Desai M , Casellas A , Chitnis CE , Severini C , Mueller I , Rogerson S , Menendez C , Requena P . PLoS Negl Trop Dis 2020 14 (5) e0008155 |
| Artemether-Lumefantrine Efficacy for the Treatment of Uncomplicated Plasmodium falciparum Infection in Choco, Colombia after 8 Years as First-Line Treatment.
Olivera MJ , Guerra AP , Cortes LJ , Horth RZ , Padilla J , Novoa J , Ade MP , Ljolje D , Lucchi NW , Marquino W , Renteria M , Yurgaky W , Macedo de Oliveira A . Am J Trop Med Hyg 2020 102 (5) 1056-1063 |
| Nearly Complete Genome Sequence of an Echovirus 30 Strain from a Cluster of Aseptic Meningitis Cases in California, September 2017.
Pan CY , Huynh T , Padilla T , Chen A , Ng TFF , Marine RL , Castro CJ , Nix WA , Wadford DA . Microbiol Resour Announc 2019 8 (44)
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| Burkholderia pseudomallei, the causative agent of melioidosis, is rare but ecologically established and widely dispersed in the environment in Puerto Rico.
Hall CM , Jaramillo S , Jimenez R , Stone NE , Centner H , Busch JD , Bratsch N , Roe CC , Gee JE , Hoffmaster AR , Rivera-Garcia S , Soltero F , Ryff K , Perez-Padilla J , Keim P , Sahl JW , Wagner DM . PLoS Negl Trop Dis 2019 13 (9) e0007727
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| Development of molecular assays to detect target-site mechanisms associated with insecticide resistance in malaria vectors from Latin America.
Lol JC , Castaneda D , Mackenzie-Impoinvil L , Romero CG , Lenhart A , Padilla NR . Malar J 2019 18 (1) 202 |
| Pyrethroid exposure alters internal and cuticle surface bacterial communities in Anopheles albimanus.
Dada N , Lol JC , Benedict AC , Lopez F , Sheth M , Dzuris N , Padilla N , Lenhart A . ISME J 2019 13 (10) 2447-2464
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| Contrasting patterns of gene expression indicate differing pyrethroid resistance mechanisms across the range of the New World malaria vector Anopheles albimanus.
Mackenzie-Impoinvil L , Weedall GD , Lol JC , Pinto J , Vizcaino L , Dzuris N , Riveron J , Padilla N , Wondji C , Lenhart A . PLoS One 2019 14 (1) e0210586
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| Genome Sequences of Rhinovirus Genotype C56 Detected in Three Patients with Acute Respiratory Illness, California, 2016 to 2017.
Pan CY , Yagi S , Padilla T , Fei Fan Ng T , Marine RL , Nix WA , Wadford DA . Microbiol Resour Announc 2018 7 (7)
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| Breast milk transmission of flaviviruses in the context of Zika virus: A systematic review.
Mann TZ , Haddad LB , Williams TR , Hills SL , Read JS , Dee DL , Dziuban EJ , Perez-Padilla J , Jamieson DJ , Honein MA , Shapiro-Mendoza CK . Paediatr Perinat Epidemiol 2018 32 (4) 358-368 |
| Whole-Genome Sequence of Human Rhinovirus C47, Isolated from an Adult Respiratory Illness Outbreak in Butte County, California, 2017.
Pan CY , Padilla T , Yagi S , Lewis LS , Ng TFF , Marine RL , Nix WA , Wadford DA . Genome Announc 2018 6 (5)
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| Burden and impact of Plasmodium vivax in pregnancy: A multi-centre prospective observational study.
Bardaji A , Martinez-Espinosa FE , Arevalo-Herrera M , Padilla N , Kochar S , Ome-Kaius M , Botto-Menezes C , Castellanos ME , Kochar DK , Kochar SK , Betuela I , Mueller I , Rogerson S , Chitnis C , Hans D , Menegon M , Severini C , Del Portillo H , Dobano C , Mayor A , Ordi J , Piqueras M , Sanz S , Wahlgren M , Slutsker L , Desai M , Menendez C . PLoS Negl Trop Dis 2017 11 (6) e0005606 |
| Estimating the Number of Pregnant Women Infected With Zika Virus and Expected Infants With Microcephaly Following the Zika Virus Outbreak in Puerto Rico, 2016.
Ellington SR , Devine O , Bertolli J , Martinez Quinones A , Shapiro-Mendoza CK , Perez-Padilla J , Rivera-Garcia B , Simeone RM , Jamieson DJ , Valencia-Prado M , Gilboa SM , Honein MA , Johansson MA . JAMA Pediatr 2016 170 (10) 940-945 |
| Zika virus disease in Colombia - preliminary report
Pacheco O , Beltran M , Nelson CA , Valencia D , Tolosa N , Farr SL , Padilla AV , Tong VT , Cuevas EL , Espinosa-Bode A , Pardo L , Rico A , Reefhuis J , Gonzalez M , Mercado M , Chaparro P , Martinez Duran M , Rao CY , Munoz MM , Powers AM , Cuellar C , Helfand R , Huguett C , Jamieson DJ , Honein MA , Ospina Martinez ML . N Engl J Med 2016 383 (6) e44 |
| Microsatellite Genotyping of Plasmodium vivax Isolates from Pregnant Women in Four Malaria Endemic Countries.
Menegon M , Bardaji A , Martinez-Espinosa F , Botto-Menezes C , Ome-Kaius M , Mueller I , Betuela I , Arevalo-Herrera M , Kochar S , Kochar SK , Jaju P , Hans D , Chitnis C , Padilla N , Castellanos ME , Ortiz L , Sanz S , Piqueras M , Desai M , Mayor A , Del Portillo H , Menendez C , Severini C . PLoS One 2016 11 (3) e0152447 |
| Probable and possible transfusion-transmitted dengue associated with NS1 antigen-negative but RNA confirmed-positive red blood cells.
Matos D , Tomashek KM , Perez-Padilla J , Muñoz-Jordán J , Hunsperger E , Horiuchi K , Noyd D , Winton C , Foster G , Lanteri M , Linnen JM , Stramer SL . Transfusion 2015 56 (1) 215-22 |
| Analytical Validation of Quantitative Real-Time PCR Methods for Quantification of Trypanosoma cruzi DNA in Blood Samples from Chagas Disease Patients.
Ramirez JC , Cura CI , da Cruz Moreira O , Lages-Silva E , Juiz N , Velazquez E , Ramirez JD , Alberti A , Pavia P , Flores-Chavez MD , Munoz-Calderon A , Perez-Morales D , Santalla J , Marcos da Matta Guedes P , Peneau J , Marcet P , Padilla C , Cruz-Robles D , Valencia E , Crisante GE , Greif G , Zulantay I , Costales JA , Alvarez-Martínez M , Martínez NE , Villarroel R , Villarroel S , Sánchez Z , Bisio M , Parrado R , Maria da Cunha Galvão L , Jácome da Câmara AC , Espinoza B , Alarcón de Noya B , Puerta C , Riarte A , Diosque P , Sosa-Estani S , Guhl F , Ribeiro I , Aznar C , Britto C , Yadón ZE , Schijman AG . J Mol Diagn 2015 17 (5) 605-15 |
| Genetic Evidence of Importation of Drug-Resistant Plasmodium falciparum to Guatemala from the Democratic Republic of the Congo.
Patel JC , Taylor SM , Juliao PC , Parobek CM , Janko M , Gonzalez LD , Ortiz L , Padilla N , Tshefu AK , Emch M , Udhayakumar V , Lindblade K , Meshnick SR . Emerg Infect Dis 2014 20 (6) 932-40 |
| Plasmodium vivax congenital malaria in an area of very low endemicity in Guatemala: implications for clinical and epidemiological surveillance in a malaria elimination context
Castellanos ME , Bardaji A , Menegon M , Mayor A , Desai M , Severini C , Menendez C , Padilla N . Malar J 2012 11 411 |
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