CDC-Authored Genomics and Precision Health Publications Database
Last data update: Dec 23, 2024. (Total: 6458 publications)
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Query Trace: Food safety[original query] |
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An outbreak investigation of Salmonella Weltevreden illnesses in the United States linked to frozen precooked shrimp imported from India - 2021
Jenkins E , Cripe J , Whitney BM , Greenlee T , Schneider B , Nguyen TA , Pightling A , Manetas J , Abraham A , Fox T , Mickelsen N , Priddy C , McMullen S , Crosby A , Viazis S . J Food Prot 2024 100360 |
Evaluation of crAssphages as a potential marker of human viral contamination in environmental water and fresh leafy greens
Suh SH , Lee JS , Kim SH , Vinjé J , Kim SH , Park GW . Front Microbiol 2024 15 1374568 |
Multistate nontyphoidal Salmonella and Shiga toxin-producing Escherichia coli outbreaks linked to international travel - United States, 2017-2020
Habrun CA , Birhane MG , François Watkins LK , Benedict K , Bottichio L , Nemechek K , Tolar B , Schroeder MN , Chen JC , Caidi H , Robyn M , Nichols M . Epidemiol Infect 2024 1-33 |
Investigation of a multistate outbreak of Listeria monocytogenes infections linked to frozen vegetables produced at individually quick-frozen vegetable manufacturing facilities
Madad A , Heiman Marshall K , Blessington T , Hardy C , Salter M , Basler C , Conrad A , Stroika S , Luo Y , Dwarka A , Gerhardt T , Rosa Y , Cibulskas K , Rosen HE , Adcock B , Kiang D , Hutton S , Parish M , Podoski B , Patel B , Viazis S . J Food Prot 2023 86 (8) 100117 |
Multistate outbreak of salmonella thompson infections linked to seafood exposure - United States, 2021
Shen AQ , Dalen A , Bankers L , Matzinger SR , Schwensohn C , Patel K , Hise KB , Pereira E , Cripe J , Jervis RH . MMWR Morb Mortal Wkly Rep 2023 72 (19) 513-516 |
An Overview of Foodborne Sample-Initiated Retrospective Outbreak Investigations and Interagency Collaboration in the United States.
Wellman A , Bazaco M , Blessington T , Pightling A , Dwarka A , Hintz L , Wise ME , Gieraltowski L , Conrad A , Nguyen TA , Hise K , Viazis S , Beal J . J Food Prot 2023 86 (6) 100089 |
An Outbreak Investigation of Vibrio parahaemolyticus Infections in the United States Linked to Crabmeat Imported from Venezuela: 2018.
Seelman SL , Whitney BM , Stokes EK , Elliot EL , Griswold T , Patel K , Bloodgood S , Jones JL , Cripe J , Cornell J , Luo Y , Williams DL , Boyle MM , Cahoon J , Brennan C , Wildey LM , Grover VM , Simonson S , Crosby AJ , Bazaco MC , Viazis S . Foodborne Pathog Dis 2023 20 (4) 123-131 |
The power, potential, benefits, and challenges of implementing high-throughput sequencing in food safety systems.
Imanian B , Donaghy J , Jackson T , Gummalla S , Ganesan B , Baker RC , Henderson M , Butler EK , Hong Y , Ring B , Thorp C , Khaksar R , Samadpour M , Lawless KA , MacLaren-Lee I , Carleton HA , Tian R , Zhang W , Wan J . NPJ Sci Food 2022 6 (1) 35 |
A 2019 Outbreak Investigation of Hepatitis A Virus Infections in the United States Linked to Imported Fresh Blackberries.
McClure M , Nsubuga J , Montgomery MP , Jenkins E , Crosby A , Schoelen D , Basler C , Ramachandran S , Lin Y , Xia GL , Khudaykov Y , Suktankar V , Wagley A , Thomas V , Woods J , Hintz L , Oliveira J , Sandoval AL , Frederick J , Hendrickson B , Gieraltowski L , Viazis S . Food Environ Virol 2022 14 (3) 236-245 |
Large outbreak of Jimsonweed (Datura stramonium) poisoning due to consumption of contaminated humanitarian relief food: Uganda, March-April 2019.
Mutebi RR , Ario AR , Nabatanzi M , Kyamwine IB , Wibabara Y , Muwereza P , Eurien D , Kwesiga B , Bulage L , Kabwama SN , Kadobera D , Henderson A , Callahan JH , Croley TR , Knolhoff AM , Mangrum JB , Handy SM , McFarland MA , Sam JLF , Harris JR , Zhu BP . BMC Public Health 2022 22 (1) 623 |
The Use of Whole-Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States.
Stevens EL , Carleton HA , Beal J , Tillman GE , Lindsey RL , Lauer AC , Pightling A , Jarvis KG , Ottesen A , Ramachandran P , Hintz L , Katz LS , Folster JP , Whichard JM , Trees E , Timme RE , McDermott P , Wolpert B , Bazaco M , Zhao S , Lindley S , Bruce BB , Griffin PM , Brown E , Allard M , Tallent S , Irvin K , Hoffmann M , Wise M , Tauxe R , Gerner-Smidt P , Simmons M , Kissler B , Defibaugh-Chavez S , Klimke W , Agarwala R , Lindsay J , Cook K , Austerman SR , Goldman D , McGarry S , Hale KR , Dessai U , Musser SM , Braden C . J Food Prot 2022 85 (5) 755-772 |
A Series of Papaya-Associated Salmonella Illness Outbreak Investigations in 2017 and 2019: A Focus on Traceback, Laboratory, and Collaborative Efforts.
Whitney BM , McClure M , Hassan R , Pomeroy M , Seelman SL , Singleton LN , Blessington T , Hardy C , Blankenship J , Pereira E , Davidson CN , Luo Y , Pettengill J , Curry P , McConnell T , Gieraltowski L , Schwensohn C , Basler C , Fritz K , McKenna C , Nieves K , Oliveira J , Sandoval AL , Crosby A , Williams D , Crocker K , Thomas D , Fulton T , Muetter L , Li L , Omoregie E , Holloman K , Brennan C , Thomas N , Barnes A , Viazis S . J Food Prot 2021 84 (11) 2002-2019 |
Shellfish poisoning outbreaks in Cuddalore District, Tamil Nadu, India.
Velayudhan A , Nayak J , Murhekar MV , Dikid T , Sodha SV . Indian J Public Health 2021 65 S29-s33 |
Carriage and Gene Content Variability of the pESI-Like Plasmid Associated with Salmonella Infantis Recently Established in United States Poultry Production.
McMillan EA , Wasilenko JL , Tagg KA , Chen JC , Simmons M , Gupta SK , Tillman GE , Folster J , Jackson CR , Frye JG . Genes (Basel) 2020 11 (12) |
Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises.
Timme RE , Lafon PC , Balkey M , Adams JK , Wagner D , Carleton H , Strain E , Hoffmann M , Sabol A , Rand H , Lindsey R , Sheehan D , Baugher JD , Trees E . Sci Data 2020 7 (1) 402 |
PulseNet and the Changing Paradigm of Laboratory-Based Surveillance for Foodborne Diseases.
Kubota KA , Wolfgang WJ , Baker DJ , Boxrud D , Turner L , Trees E , Carleton HA , Gerner-Smidt P . Public Health Rep 2019 134 22s-28s |
SeqSero2: rapid and improved Salmonella serotype determination using whole genome sequencing data.
Zhang S , Den-Bakker HC , Li S , Chen J , Dinsmore BA , Lane C , Lauer AC , Fields PI , Deng X . Appl Environ Microbiol 2019 85 (23) |
Multidrug-Resistant Salmonella I 4,[5],12:i:- and Salmonella Infantis Infections Linked to Whole Roasted Pigs from a Single Slaughter and Processing Facility.
Kawakami V , Bottichio L , Lloyd J , Carleton H , Leeper M , Olson G , Li Z , Kissler B , Angelo KM , Whitlock L , Sinatra J , Defibaugh-Chavez S , Bicknese A , Kay M , Wise ME , Basler C , Duchin J . J Food Prot 2019 82 (9) 1615-1624 |
Outbreak of Salmonella Newport Infections with Decreased Susceptibility to Azithromycin Linked to Beef Obtained in the United States and Soft Cheese Obtained in Mexico - United States, 2018-2019.
Plumb ID , Schwensohn CA , Gieraltowski L , Tecle S , Schneider ZD , Freiman J , Cote A , Noveroske D , Kolsin J , Brandenburg J , Chen JC , Tagg KA , White PB , Shah HJ , Francois Watkins LK , Wise ME , Friedman CR . MMWR Morb Mortal Wkly Rep 2019 68 (33) 713-717 |
Advancing biological hazards risk assessment.
Messens W , Hugas M , Afonso A , Aguilera J , Berendonk TU , Carattoli A , Dhollander S , Gerner-Smidt P , Kriz N , Liebana E , Medlock J , Robinson T , Stella P , Waltner-Toews D , Catchpole M . EFSA J 2019 17 e170714 |
Use of Whole-Genome Sequencing for Food Safety and Public Health in the United States.
Brown E , Dessai U , McGarry S , Gerner-Smidt P . Foodborne Pathog Dis 2019 16 (7) 441-450 |
An Overview of PulseNet USA Databases.
Tolar B , Joseph LA , Schroeder MN , Stroika S , Ribot EM , Hise KB , Gerner-Smidt P . Foodborne Pathog Dis 2019 16 (7) 457-462 |
The use of next generation sequencing for improving food safety: Translation into practice.
Jagadeesan B , Gerner-Smidt P , Allard MW , Leuillet S , Winkler A , Xiao Y , Chaffron S , Van Der Vossen J , Tang S , Katase M , McClure P , Kimura B , Ching Chai L , Chapman J , Grant K . Food Microbiol 2019 79 96-115 |
Multiplex TaqMan qPCR assay for specific identification of encapsulated Trichinella species prevalent in North America.
Almeida M , Bishop H , Nascimento FS , Mathison B , Bradbury RS , Silva AD . Mem Inst Oswaldo Cruz 2018 113 (11) e180305 |
Public health investigation and response to a hepatitis A outbreak from imported scallops consumed raw - Hawaii, 2016
Viray MA , Hofmeister MG , Johnston DI , Krishnasamy VP , Nichols C , Foster MA , Balajadia R , Wise ME , Manuzak A , Lin Y , Xia G , Basler C , Nsubuga J , Woods J , Park SY . Epidemiol Infect 2018 147 1-8 |
Protracted Outbreak of Salmonella Newport Infections Linked to Ground Beef: Possible Role of Dairy Cows - 21 States, 2016-2017.
Marshall KEH , Tewell M , Tecle S , Leeper M , Sinatra J , Kissler B , Fung A , Brown K , Wagner D , Trees E , Hise KB , Chaturvedi V , Schlater LK , Morningstar-Shaw BR , Whitlock L , Holt K , Becker K , Nichols M , Williams IT , Jhung M , Wise ME , Gieraltowski L . MMWR Morb Mortal Wkly Rep 2018 67 (15) 443-446 |
Foodborne cryptosporidiosis.
Ryan U , Hijjawi N , Xiao L . Int J Parasitol 2017 48 (1) 1-12 |
National Antimicrobial Resistance Monitoring System: Two Decades of Advancing Public Health Through Integrated Surveillance of Antimicrobial Resistance.
Karp BE , Tate H , Plumblee JR , Dessai U , Whichard JM , Thacker EL , Robertson Hale K , Wilson W , Friedman CR , Griffin PM , McDermott PF . Foodborne Pathog Dis 2017 14 (10) 545-557 |
A Comparative Analysis of the Lyve-SET Phylogenomics Pipeline for Genomic Epidemiology of Foodborne Pathogens.
Katz LS , Griswold T , Williams-Newkirk AJ , Wagner D , Petkau A , Sieffert C , Van Domselaar G , Deng X , Carleton HA . Front Microbiol 2017 8 375 |
Comparative genomics reveals adaptive evolution of Asian tapeworm in switching to a new intermediate host.
Wang S , Wang S , Luo Y , Xiao L , Luo X , Gao S , Dou Y , Zhang H , Guo A , Meng Q , Hou J , Zhang B , Zhang S , Yang M , Meng X , Mei H , Li H , He Z , Zhu X , Tan X , Zhu XQ , Yu J , Cai J , Zhu G , Hu S , Cai X . Nat Commun 2016 7 12845 |
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