CDC-Authored Genomics and Precision Health Publications Database
Last data update: Dec 02, 2024. (Total: 6432 publications)
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Crimean-Congo hemorrhagic fever cases diagnosed during an outbreak of Sudan virus disease in Uganda, 2022-23
Balinandi S , Mulei S , Whitmer S , Nyakarahuka L , Cossaboom CM , Shedroff E , Morales-Betoulle M , Krapiunaya I , Tumusiime A , Kyondo J , Baluku J , Namanya D , Torach CR , Mutesi J , Kiconco J , Pimundu G , Muyigi T , Rowland J , Nsawotebba A , Ssewanyana I , Muwanguzi D , Kadobera D , Harris JR , Ario AR , Atek K , Kyobe HB , Nabadda S , Kaleebu P , Mwebesa HG , Montgomery JM , Shoemaker TR , Lutwama JJ , Klena JD . PLoS Negl Trop Dis 2024 18 (10) e0012595 |
A public, cross-reactive glycoprotein epitope confounds Ebola virus serology
Kainulainen MH , Harmon JR , Karaaslan E , Kyondo J , Whitesell A , Twongyeirwe S , Malenfant JH , Baluku J , Kofman A , Bergeron É , Waltenburg MA , Nyakarahuka L , Balinandi S , Cossaboom CM , Choi MJ , Shoemaker TR , Montgomery JM , Spiropoulou CF . J Med Virol 2024 96 (10) e29946 |
Fatal meningoencephalitis associated with Ebola virus persistence in two survivors of Ebola virus disease in the Democratic Republic of the Congo: a case report study
Mukadi-Bamuleka D , Edidi-Atani F , Morales-Betoulle ME , Legand A , Nkuba-Ndaye A , Bulabula-Penge J , Mbala-Kingebeni P , Crozier I , Mambu-Mbika F , Whitmer S , Tshiani Mbaya O , Hensley LE , Kitenge-Omasumbu R , Davey R , Mulangu S , Fonjungo PN , Wiley MR , Klena JD , Peeters M , Delaporte E , van Griensven J , Ariën KK , Pratt C , Montgomery JM , Formenty P , Muyembe-Tamfum JJ , Ahuka-Mundeke S . Lancet Microbe 2024 100905 |
Sudan virus disease super-spreading, Uganda, 2022
Komakech A , Whitmer S , Izudi J , Kizito C , Ninsiima M , Ahirirwe SR , Kabami Z , Ario AR , Kadobera D , Kwesiga B , Gidudu S , Migisha R , Makumbi I , Eurien D , Kayiwa J , Bulage L , Gonahasa DN , Kyamwine I , Okello PE , Nansikombi HT , Atuhaire I , Asio A , Elayeete S , Nsubuga EJ , Masanja V , Migamba SM , Mwine P , Nakamya P , Nampeera R , Kwiringira A , Akunzirwe R , Naiga HN , Namubiru SK , Agaba B , Zalwango JF , Zalwango MG , King P , Simbwa BN , Zavuga R , Wanyana MW , Kiggundu T , Oonyu L , Ndyabakira A , Komugisha M , Kibwika B , Ssemanda I , Nuwamanya Y , Kamukama A , Aanyu D , Kizza D , Ayen DO , Mulei S , Balinandi S , Nyakarahuka L , Baluku J , Kyondo J , Tumusiime A , Aliddeki D , Masiira B , Muwanguzi E , Kimuli I , Bulwadda D , Isabirye H , Aujo D , Kasambula A , Okware S , Ochien E , Komakech I , Okot C , Choi M , Cossaboom CM , Eggers C , Klena JD , Osinubi MO , Sadigh KS , Worrell MC , Boore AL , Shoemaker T , Montgomery JM , Nabadda SN , Mwanga M , Muruta AN , Harris JR . BMC Infect Dis 2024 24 (1) 520 |
Sosuga virus detected in Egyptian rousette bats (Rousettus aegyptiacus) in Sierra Leone
Amman BR , Koroma AH , Schuh AJ , Conteh I , Sealy TK , Foday I , Johnny J , Bakarr IA , Whitmer SLM , Wright EA , Gbakima AA , Graziano J , Bangura C , Kamanda E , Osborne A , Saidu E , Musa JA , Bangura DF , Williams SMT , Fefegula GM , Sumaila C , Jabaty J , James FH , Jambai A , Garnett K , Kamara TF , Towner JS , Lebbie A . Viruses 2024 16 (4) |
Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases.
Arias A , Watson SJ , Asogun D , Tobin EA , Lu J , Phan MVT , Jah U , Wadoum REG , Meredith L , Thorne L , Caddy S , Tarawalie A , Langat P , Dudas G , Faria NR , Dellicour S , Kamara A , Kargbo B , Kamara BO , Gevao S , Cooper D , Newport M , Horby P , Dunning J , Sahr F , Brooks T , Simpson AJH , Groppelli E , Liu G , Mulakken N , Rhodes K , Akpablie J , Yoti Z , Lamunu M , Vitto E , Otim P , Owilli C , Boateng I , Okoror L , Omomoh E , Oyakhilome J , Omiunu R , Yemisis I , Adomeh D , Ehikhiametalor S , Akhilomen P , Aire C , Kurth A , Cook N , Baumann J , Gabriel M , Wölfel R , Di Caro A , Carroll MW , Günther S , Redd J , Naidoo D , Pybus OG , Rambaut A , Kellam P , Goodfellow I , Cotten M . Virus Evol 2016 2 (1) vew016 |
2020 Ebola virus disease outbreak in Équateur Province, Democratic Republic of the Congo: a retrospective genomic characterisation
Kinganda-Lusamaki E , Whitmer S , Lokilo-Lofiko E , Amuri-Aziza A , Muyembe-Mawete F , Makangara-Cigolo JC , Makaya G , Mbuyi F , Whitesell A , Kallay R , Choi M , Pratt C , Mukadi-Bamuleka D , Kavunga-Membo H , Matondo-Kuamfumu M , Mambu-Mbika F , Ekila-Ifinji R , Shoemaker T , Stewart M , Eng J , Rajan A , Soke GN , Fonjungo PN , Otshudiema JO , Folefack GLT , Pukuta-Simbu E , Talundzic E , Shedroff E , Bokete JL , Legand A , Formenty P , Mores CN , Porzucek AJ , Tritsch SR , Kombe J , Tshapenda G , Mulangu F , Ayouba A , Delaporte E , Peeters M , Wiley MR , Montgomery JM , Klena JD , Muyembe-Tamfum JJ , Ahuka-Mundeke S , Mbala-Kingebeni P . Lancet Microbe 2024 |
Filoviruses: Scientific gaps and prototype pathogen recommendation
Dupuy LC , Spiropoulou CF , Towner JS , Spengler JR , Sullivan NJ , Montgomery JM . J Infect Dis 2023 228 S446-s459 |
Molecular characterization of the 2022 Sudan virus disease outbreak in Uganda
Balinandi S , Whitmer S , Mulei S , Nassuna C , Pimundu G , Muyigi T , Kainulainen M , Shedroff E , Krapiunaya I , Scholte F , Nyakarahuka L , Tumusiime A , Kyondo J , Baluku J , Kiconco J , Harris JR , Ario AR , Kagirita A , Bosa HK , Ssewanyana I , Nabadda S , Mwebesa HG , Aceng JR , Atwine D , Lutwama JJ , Shoemaker TR , Montgomery JM , Kaleebu P , Klena JD . J Virol 2023 97 (10) e0059023 |
Ebola Virus Disease Outbreak - Democratic Republic of the Congo, August 2018-November 2019.
Aruna A , Mbala P , Minikulu L , Mukadi D , Bulemfu D , Edidi F , Bulabula J , Tshapenda G , Nsio J , Kitenge R , Mbuyi G , Mwanzembe C , Kombe J , Lubula L , Shako JC , Mossoko M , Mulangu F , Mutombo A , Sana E , Tutu Y , Kabange L , Makengo J , Tshibinkufua F , Ahuka-Mundeke S , Muyembe JJ , Ebola Response CDC , Alarcon Walter , Bonwitt Jesse , Bugli Dante , Bustamante Nirma D , Choi Mary , Dahl Benjamin A , DeCock Kevin , Dismer Amber , Doshi Reena , Dubray Christine , Fitter David , Ghiselli Margherita , Hall Noemi , Hamida Amen Ben , McCollum Andrea M , Neatherlin John , Raghunathan Pratima L , Ravat Fatima , Reynolds Mary G , Rico Adriana , Smith Nailah , Soke Gnakub Norbert , Trudeau Aimee T , Victory Kerton R , Worrell Mary Claire . MMWR Morb Mortal Wkly Rep 2019 68 (50) 1162-1165 |
Mouse models of Ebola virus tolerance and lethality: Characterization of CD-1 mice infected with wild-type, guinea pig-adapted, or mouse-adapted variants
Spengler JR , Welch SR , Ritter JM , Harmon JR , Coleman-McCray JD , Genzer SC , Nascimento Seixas J , Scholte FEM , Davies KA , Bradfute SB , Montgomery JM , Spiropoulou CF . Antiviral Res 2022 210 105496 |
Exploring inactivation of SARS-CoV-2, MERS-CoV, Ebola, Lassa, and Nipah viruses on N95 and KN95 respirator material using photoactivated methylene blue to enable reuse.
Scholte Florine EM , Kabra Kareem B , Tritsch Sarah R , Montgomery Joel M , Spiropoulou Christina F , Mores Christopher N , Harcourt Brian H . Am J Infect Control 2022 50 (8) 863-870 |
Low Prevalence of Deletions of the pfhrp2 and pfhrp3 Genes in Plasmodium falciparum Parasites in Freetown, Sierra Leone in 2015.
McCaffery JN , Huber CS , Samai HM , Rogier E . Am J Trop Med Hyg 2022 106 (6) 1667-1669 |
Risk Factors for Ebola Virus Persistence in Semen of Survivors - Liberia.
Dyal J , Kofman A , Kollie JZ , Fankhauser J , Orone R , Soka MJ , Glaybo U , Kiawu A , Freeman E , Giah G , Tony HD , Faikai M , Jawara M , Kamara K , Kamara S , Flowers B , Kromah ML , Desamu-Thorpe R , Graziano J , Brown S , Morales-Betoulle ME , Cannon DL , Su K , Linderman SL , Plucinski M , Rogier E , Bradbury RS , Secor WE , Bowden KE , Phillips C , Carrington MN , Park YH , Martin MP , Del Pilar Aguinaga M , Mushi R , Haberling DL , Ervin ED , Klena JD , Massaquoi M , Nyenswah T , Nichol ST , Chiriboga DE , Williams DE , Hinrichs SH , Ahmed R , Vonhm BT , Rollin PE , Purpura LJ , Choi MJ . Clin Infect Dis 2022 76 (3) e849-e856 |
Implementation of DHIS2 for Disease Surveillance in Guinea: 2015-2020.
Reynolds E , Martel LD , Bah MO , Bah M , Bah MB , Boubacar B , Camara N , Camara YB , Corvil S , Diallo BI , Diallo IT , Diallo MK , Diallo MT , Diallo T , Guilavogui S , Hemingway-Foday JJ , Hann F , Kaba A , Kaba AK , Kande M , Lamarana DM , Middleton K , Sidibe N , Souare O , Standley CJ , Stolka KB , Tchwenko S , Worrell MC , MacDonald PDM . Front Public Health 2021 9 761196 |
Rapid establishment of a frontline field laboratory in response to an imported outbreak of Ebola virus disease in western Uganda, June 2019.
Schuh AJ , Kyondo J , Graziano J , Balinandi S , Kainulainen MH , Tumusiime A , Nyakarahuka L , Mulei S , Baluku J , Lonergan W , Mayer O , Masereka R , Masereka F , Businge E , Gatare A , Kabyanga L , Muhindo S , Mugabe R , Makumbi I , Kayiwa J , Wetaka MM , Brown V , Ojwang J , Nelson L , Millard M , Nichol ST , Montgomery JM , Taboy CH , Lutwama JJ , Klena JD . PLoS Negl Trop Dis 2021 15 (12) e0009967 |
How to improve outbreak response: a case study of integrated outbreak analytics from Ebola in Eastern Democratic Republic of the Congo.
Carter SE , Ahuka-Mundeke S , Pfaffmann Zambruni J , Navarro Colorado C , van Kleef E , Lissouba P , Meakin S , le Polain de Waroux O , Jombart T , Mossoko M , Bulemfu Nkakirande D , Esmail M , Earle-Richardson G , Degail MA , Umutoni C , Anoko JN , Gobat N . BMJ Glob Health 2021 6 (8) |
Implementation of the Ebola Virus Persistence in Ocular Tissues and Fluids (EVICT) study: Lessons learned for vision health systems strengthening in Sierra Leone.
Shantha JG , Crozier I , Kraft CS , Grant DG , Goba A , Hayek BR , Hartley C , Barnes KG , Uyeki TM , Schieffelin J , Garry RF , Bausch DG , Farmer PE , Mattia JG , Vandy MJ , Yeh S . PLoS One 2021 16 (7) e0252905 |
Chainchecker: An application to visualise and explore transmission chains for Ebola virus disease.
Gaythorpe K , Morris A , Imai N , Stewart M , Freeman J , Choi M . PLoS One 2021 16 (2) e0247002 |
Persistence of Ebola virus in semen among Ebola virus disease survivors in Sierra Leone: A cohort study of frequency, duration, and risk factors.
Thorson AE , Deen GF , Bernstein KT , Liu WJ , Yamba F , Habib N , Sesay FR , Gaillard P , Massaquoi TA , McDonald SLR , Zhang Y , Durski KN , Singaravelu S , Ervin E , Liu H , Coursier A , Marrinan JE , Ariyarajah A , Carino M , Formenty P , Ströher U , Lamunu M , Wu G , Sahr F , Xu W , Knust B , Broutet N . PLoS Med 2021 18 (2) e1003273 |
Vaccination of contacts of Ebola virus disease survivors to prevent further transmission.
Doshi RH , Fleming M , Mukoka AK , Carter RJ , Hyde TB , Choi M , Nzaji MK , Bateyi SH , Christie A , Nichol ST , Damon IK , Beach M , Musenga EM , Fitter DL . Lancet Glob Health 2020 8 (12) e1455-e1456 |
Pandemic diseases preparedness and response in the age of COVID-19-a symposium report.
Cable J , Heymann DL , Uzicanin A , Tomori O , Marinissen MJ , Katz R , Kerr L , Lurie N , Parker GW , Madad S , Maldin Morgenthau B , Osterholm MT , Borio L . Ann N Y Acad Sci 2020 1489 (1) 17-29 |
Remdesivir targets a structurally analogous region of the Ebola virus and SARS-CoV-2 polymerases.
Lo MK , Albariño CG , Perry JK , Chang S , Tchesnokov EP , Guerrero L , Chakrabarti A , Shrivastava-Ranjan P , Chatterjee P , McMullan LK , Martin R , Jordan R , Götte M , Montgomery JM , Nichol ST , Flint M , Porter D , Spiropoulou CF . Proc Natl Acad Sci U S A 2020 117 (43) 26946-26954 |
Characterisation of infectious Ebola virus from the ongoing outbreak to guide response activities in the Democratic Republic of the Congo: a phylogenetic and in vitro analysis.
McMullan LK , Flint M , Chakrabarti A , Guerrero L , Lo MK , Porter D , Nichol ST , Spiropoulou CF , Albarino C . Lancet Infect Dis 2019 19 (9) 1023-1032 |
Comprehensive Clinical and Laboratory Follow-up of a Female Patient With Ebola Virus Disease: Sierra Leone Ebola Virus Persistence Study.
Liu WJ , Sesay FR , Coursier A , Knust B , Marrinan JE , Whitmer S , McDonald SLR , Gaillard P , Liu Y , Su Q , Zhang Y , Crozier I , Ariyarajah A , Carino M , Massaquoi T , Broutet N , Xu W , Wu G , Stroher U , Gao GF , Formenty P , Sahr F , Deen GF . Open Forum Infect Dis 2019 6 (3) ofz068 |
Malaria Surveillance - United States, 2016.
Mace KE , Arguin PM , Lucchi NW , Tan KR . MMWR Surveill Summ 2019 68 (5) 1-35 |
New filovirus disease classification and nomenclature.
Kuhn JH , Adachi T , Adhikari NKJ , Arribas JR , Bah IE , Bausch DG , Bhadelia N , Borchert M , Brantsaeter AB , Brett-Major DM , Burgess TH , Chertow DS , Chute CG , Cieslak TJ , Colebunders R , Crozier I , Davey RT , de Clerck H , Delgado R , Evans L , Fallah M , Fischer WA 2nd , Fletcher TE , Fowler RA , Grunewald T , Hall A , Hewlett A , Hoepelman AIM , Houlihan CF , Ippolito G , Jacob ST , Jacobs M , Jakob R , Jacquerioz FA , Kaiser L , Kalil AC , Kamara RF , Kapetshi J , Klenk HD , Kobinger G , Kortepeter MG , Kraft CS , Kratz T , Bosa HSK , Lado M , Lamontagne F , Lane HC , Lobel L , Lutwama J , Lyon GM 3rd , Massaquoi MBF , Massaquoi TA , Mehta AK , Makuma VM , Murthy S , Musoke TS , Muyembe-Tamfum JJ , Nakyeyune P , Nanclares C , Nanyunja M , Nsio-Mbeta J , O'Dempsey T , Paweska JT , Peters CJ , Piot P , Rapp C , Renaud B , Ribner B , Sabeti PC , Schieffelin JS , Slenczka W , Soka MJ , Sprecher A , Strong J , Swanepoel R , Uyeki TM , van Herp M , Vetter P , Wohl DA , Wolf T , Wolz A , Wurie AH , Yoti Z . Nat Rev Microbiol 2019 17 (5) 261-263 |
Introduction of Ebola virus into a remote border district of Sierra Leone, 2014: use of field epidemiology and RNA sequencing to describe chains of transmission.
DeSilva MB , Styles T , Basler C , Moses FL , Husain F , Reichler M , Whitmer S , McAuley J , Belay E , Friedman M , Muoghalu IS , Swaray P , Stroher U , Redd JT . Epidemiol Infect 2019 147 e88 |
Ebola Virus Infection Associated with Transmission from Survivors.
Den Boon S , Marston BJ , Nyenswah TG , Jambai A , Barry M , Keita S , Durski K , Senesie SS , Perkins D , Shah A , Green HH , Hamblion EL , Lamunu M , Gasasira A , Mahmoud NO , Djingarey MH , Morgan O , Crozier I , Dye C . Emerg Infect Dis 2019 25 (2) 249-255 |
A genome-wide CRISPR screen identifies N-acetylglucosamine-1-phosphate transferase as a potential antiviral target for Ebola virus.
Flint M , Chatterjee P , Lin DL , McMullan LK , Shrivastava-Ranjan P , Bergeron E , Lo MK , Welch SR , Nichol ST , Tai AW , Spiropoulou CF . Nat Commun 2019 10 (1) 285 |
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