Last data update: Aug 15, 2025. (Total: 49733 publications since 2009)
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| Brainstorm: A case of granulomatous encephalitis
Benoit Patrick , Wang Stephanie , Wang Catherine , Chakravarti Arpita , Villalba Julian A , Ali Ibne Karim M , Roy Shantanu , Sapp Sarah GH , Reagan-Steiner Sarah , Nelson Kristoff , Cayrol Romain , Luong Me-Linh , Grand'Maison Sophie , Desjardins Michaël . J Assoc Med Microbiol Infect Dis Can 2024 9 (2) 113-120 Background: Free-living amoebas (FLAs) can cause severe and fatal central nervous system infections that are difficult to diagnose. Methods: We present the case of a 74-year-old immunocompetent woman admitted for focal neurological symptoms with enhancing lesions in the right cerebellar hemisphere. A first cerebral biopsy showed granulomatous inflammation, but no microorganisms were identified. After transient clinical improvement, she eventually deteriorated 4 months after initial presentation, with an MRI confirming multiple new masses affecting all cerebral lobes. Results: A second brain biopsy revealed granulomatous and acute inflammation with organisms containing a large central nucleus with prominent karyosome, consistent with FLAs. Immunohistochemical and polymerase chain reaction assays performed at CDC were positive for Acanthamoeba spp, confirming the diagnosis of granulomatous amoebic encephalitis (GAE) caused by Acanthamoeba spp. The patient was treated with combination therapy recommended by CDC, but died a few days later. Upon histopathological rereview, amoebic cysts and trophozoites were identified by histochemical and immunohistochemical methods in the first cerebral biopsy. Conclusion: FLA infections can be challenging to diagnose because of the low incidence, non-specific clinical and radiological presentation, lack of accessible diagnostic tools, and clinicians' unfamiliarity. This case highlights the importance of recognizing FLA as a potential cause of granulomatous encephalitis, even in the absence of risk factors, as early treatment might be associated with favourable outcomes in case reports. When suspected, CDC laboratories offer tests to confirm the diagnosis promptly. | Historique : Les amibes libres peuvent causer des infections du système nerveux central graves et fatales qui sont difficiles à diagnostiquer. Méthodologie : Les auteurs présentent le cas d'une femme immunocompétente de 74 ans hospitalisée à cause de symptômes neurologiques focaux avec lésions rehaussantes dans l'hémisphère cérébelleux droit. Une première biopsie cérébrale a révélé une inflammation granulomateuse, mais aucun microorganisme n'a été décelé. Après une amélioration clinique transitoire, son état s'est détérioré quatre mois après la première consultation, et l'IRM a confirmé de multiples nouvelles masses touchant tous les lobes cérébraux. Résultats : Une deuxième biopsie cérébrale a révélé une inflammation granulomateuse aiguë par des organismes dont les gros noyaux centraux et les caryosomes volumineux étaient évocateurs d'amibes libres. L'immunohistochimie et l'amplification en chaîne par polymérase effectuées aux CDC se sont avérés positives pour Acanthamoeba spp, ce qui a confirmé un diagnostic d'encéphalite amibienne granulomateuse causée par Acanthamoeba spp. La patiente a reçu une polythérapie recommandée par les CDC, mais est malheureusement décédée quelques jours plus tard. À la reprise de l'analyse histopathologique, des kystes amibiens et des trophozoïtes ont été décelés dans la première biopsie cérébrale par des méthodes histochimiques et immunohistochimiques. Conclusion : Les infections par des amibes libres peuvent être difficiles à diagnostiquer en raison de leur faible incidence, de leur présentation clinique et radiologique non spécifique, de l'absence d'outils diagnostiques accessibles et de la méconnaissance des cliniciens. Ce cas renforce l'importance d'inclure les amibes libres dans les causes potentielles d'encéphalite granulomateuse, même en l'absence de facteurs de risque, car un traitement rapide a été associé à des résultats favorables dans certains rapports de cas. Lorsqu'on en soupçonne la présence, les laboratoires des CDC offrent des tests pour confirmer rapidement le diagnostic. |
| Mortalité maternelle : plus ça change, plus c'est pareil
Cook J , Hollier LM , Knight M . J Obstet Gynaecol Can 2023 45 (12) 102275 Une femme enceinte à 31 semaines d’aménorrhée connaissait une grossesse jusque là sans complication lorsqu’elle a appelé au cabinet de son obstétricien pour une enflure de la jambe qui durait depuis quelques jours. On lui avait conseillé de se lever et de marcher dans la journée, de surélever ses jambes lorsqu’elle s’asseyait et d’appliquer un linge froid sur la jambe enflée. Le lendemain, elle s’est présentée à l’hôpital pour un essoufflement et est décédée peu de temps après des suites d’une embolie pulmonaire. | Après une grossesse sans complication, une femme avait été admise à l’hôpital pour un déclenchement du travail à 36 semaines d’aménorrhée. Après l’accouchement, la mère et le bébé se portaient bien et le personnel infirmier n’avait aucune inquiétude. Trois jours plus tard, la mère est retournée à l’urgence pour une fièvre et est décédée d’un sepsis causé par une infection post-partum à streptocoque du groupe A (foyer d’infection inconnu). | Une adolescente multipare avait subi un avortement spontané avant son décès. Elle avait des antécédents d’abus dans son enfance, de recours aux services de santé mentale pédiatrique et de l’adolescence, de mésusage de substances psychoactives et de violence conjugale. Un diagnostic de trouble affectif bipolaire avait été soulevé sans être confirmé. La patiente avait refusé d’être orientée vers une équipe de santé mentale périnatale avant son suicide. | Ces histoires sont celles de femmes qui sont récemment décédées pendant la grossesse ou la période post-partum au Canada, au Royaume-Uni et aux États-Unis. Ces histoires sont essentiellement la même. Trois pays. Trois systèmes de santé en difficulté. Trois approches de prévention de la mortalité maternelle. Tant de leçons à tirer les uns des autres. |
| Molecular characterization of a human G20P[28] rotavirus a strain with multiple genes related to bat rotaviruses.
Esona MD , Roy S , Rungsrisuriyachai K , Gautam R , Hermelijn S , Rey-Benito G , Bowen MD . Infect Genet Evol 2017 57 166-170
Group A rotaviruses are the major cause of severe gastroenteritis in the young of mammals and birds. This report describes characterization of an unusual G20P[28] rotavirus strain detected in a 24month old child from Suriname. Genomic sequence analyses revealed that the genotype constellation of the Suriname strain RVA/Human-wt/SUR/2014735512/2013/G20P[28] was G20-P[28]-I13-R13-C13-M12-A23-N13-T15-E20-H15. Genes VP1, VP2, VP3, NSP1, NSP2, NSP3, NSP4 and NSP5 were recently assigned novel genotypes by the Rotavirus Classification Working Group (RCWG). Three of the 11 gene segments (VP7, VP4, VP6) were similar to cognate gene sequences of bat-like human rotavirus strain Ecu534 from Ecuador and the VP7, NSP3 and NSP5 gene segments of strain RVA/Human-wt/SUR/2014735512/2013/G20P[28] were found to be closely related to gene sequences of bat rotavirus strain 3081/BRA detected in Brazil. Although distantly related, the VP1 gene of the study strain and bat strain BatLi09 detected in Cameroon in 2014 are monophyletic. The NSP1 gene was found to be most closely related to human strain QUI-35-F5 from Brazil. These findings suggest that strain RVA/Human-wt/SUR/2014735512/2013/G20P[28] represents a zoonotic infection from a bat host. |
| Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using Standard Reference Material 1950 metabolites in frozen human plasma
Bowden JA , Heckert A , Ulmer CZ , Jones CM , Koelmel JP , Abdullah L , Ahonen L , Alnouti Y , Armando A , Asara JM , Bamba T , Barr JR , Bergquist J , Borchers CH , Brandsma J , Breitkopf SB , Cajka T , Cazenave-Gassiot A , Checa A , Cinel MA , Colas RA , Cremers S , Dennis EA , Evans JE , Fauland A , Fiehn O , Gardner MS , Garrett TJ , Gotlinger KH , Han J , Huang Y , Neo AH , Hyotylainen T , Izumi Y , Jiang H , Jiang H , Jiang J , Kachman M , Kiyonami R , Klavins K , Klose C , Kofeler HC , Kolmert J , Koal T , Koster G , Kuklenyik Z , Kurland IJ , Leadley M , Lin K , Maddipati KR , McDougall D , Meikle PJ , Mellett NA , Monnin C , Moseley MA , Nandakumar R , Oresic M , Patterson RE , Peake D , Pierce JS , Post M , Postle AD , Pugh R , Qui Y , Quehenberger O , Ramrup P , Rees J , Rembiesa B , Reynaud D , Roth MR , Sales S , Schuhmann K , Schwartzman ML , Serhan CN , Shevchenko A , Somerville SE , St John-Williams L , Surma MA , Takeda H , Thakare R , Thompson JW , Torta F , Triebl A , Trötzmüller M , Ubhayasekera SJK , Vuckovic D , Weir JM , Welti R , Wenk MR , Wheelock CE , Yao L , Yuan M , Zhao XH , Zhou S . J Lipid Res 2017 58 (12) 2275-2288 As the lipidomics field continues to advance, self-evaluation within the community is critical. Here, we performed an interlaboratory comparison exercise for lipidomics using Standard Reference Material (SRM) 1950 Metabolites in Frozen Human Plasma, a commercially available reference material. The interlaboratory study comprised 31 diverse laboratories, with each lab using a different lipidomics workflow. A total of 1527 unique lipids were measured across all laboratories, and consensus location estimates and associated uncertainties were determined for 339 of these lipids measured at the sum composition level by five or more participating laboratories. These evaluated lipids detected in SRM 1950 serve as community-wide benchmarks for intra- and inter-laboratory quality control and method validation. These analyses were performed using non-standardized laboratory-independent workflows. The consensus locations were also compared to a previous examination of SRM 1950 by the LIPID MAPS consortium. While the central theme of the interlaboratory study was to provide values to help harmonize lipids, lipid mediators, and precursor measurements across the community, it was also initiated to stimulate a discussion regarding areas in need of improvement. |
| Custodes invicem custodiunt (the watchmen can watch each other)
Basavaraju SV , Kuehnert MJ . Transfusion 2015 55 (9) 2293-4 The editorial by Dodd and Katz, “Qui custodiet ipsos custodes?” often translated as “Who will watch the watchmen?” in response to our recent summary of National Healthcare Safety Network (NHSN) Hemovigilance Module results raises good points, but some comments are misleading and would benefit from additional clarification.1,2 | | Dodd and Katz assert that participating facilities in the NHSN Hemovigilance Module do not comprise a “legitimate sample,” because we did not apply statistical tests for rate comparisons. Statistical tests for comparison are used to allow one to extrapolate conclusions about a larger population based on data collected from a smaller, representative sample. Participation in the NHSN hemovigilance module is voluntary, and the participating health care facilities comprise a “convenience” sample of module participants, not a statistically representative sample. Moreover, these facilities report data on all transfusions, not just a sample of transfusions and/or blood components. Therefore, the adverse reaction rates and differences that are observed (e.g., among apheresis and whole blood–derived components) are reported from actual transfusion cohorts and are not representative of all facilities or transfused blood units nationally. As pointed out by Dodd and Katz, although not from a nationally representative sample, the validity of our findings are supported by their similarity to rates reported by other major hemovigilance systems world-wide.1 Specifically, higher rates of adverse reactions among apheresis platelets (PLTs) have been reported by the French hemovigilance system and are biologically plausible.3 While we acknowledge that differences in adverse reaction rates observed between apheresis and whole blood–derived PLTs may be attributable to variations in denominator reporting or other methodologic factors, further studies are needed before suggesting that this entirely explains these observations. |
| Phylodynamics of Enterovirus A71-Associated Hand, Foot and Mouth Disease in Viet Nam.
Geoghegan JL , Van Tan L , Kuhnert D , Halpin RA , Lin X , Simenauer A , Akopov A , Das SR , Stockwell TB , Shrivastava S , Ngoc NM , Uyen LT , Tuyen NT , Thanh TT , Hang VT , Qui PT , Hung NT , Khanh TH , Thinh LQ , Nhan LN , Van HM , Viet DC , Tuan HM , Viet HL , Hien TT , Chau NV , Thwaites G , Grenfell BT , Stadler T , Wentworth DE , Holmes EC , Van Doorn HR . J Virol 2015 89 (17) 8871-9
Enterovirus A71 (EV-A71) is a major cause of hand, foot and mouth disease (HFMD) and is particularly prevalent in parts of Southeast Asia, affecting thousands of children and infants each year. Revealing the evolutionary and epidemiological dynamics of EV-A71 through time and space is central to understanding its outbreak potential. We generated the full genome sequences of 200 EV-A71 strains sampled from various locations in Viet Nam between 2011-2013, and used these sequence data to determine the evolutionary history and phylodynamics of EV-A71 in Viet Nam, providing estimates of the effective reproduction number (Re) of the infection through time. In addition, we described the phylogeography of EV-A71 throughout Southeast Asia, documenting patterns of viral gene flow. Accordingly, our analysis reveals that a rapid genogroup switch from C4 to B5 likely took place during 2012 in Viet Nam. We show that the Re of subgenogroup C4 decreased during the time-frame of sampling, while that of B5 increased and remained >1 at the end of 2013, corresponding to a rise in B5 prevalence. Our study reveals that the subgenogroup B5 virus that emerged into Viet Nam is closely related to variants that were responsible for large epidemics in Malaysia and Taiwan and therefore extends our knowledge regarding its associated endemic area. Subgenogroup B5 evidently has the potential to cause more widespread outbreaks across Southeast Asia. IMPORTANCE: EV-A71 is one of many viruses that cause HFMD, a common syndrome that largely affects infants and children. HFMD usually causes only mild illness with no long-term consequences. Occasionally, however, severe infection may arise, especially in very young children, causing neurological complications and even death. EV-A71 is highly contagious and is associated with the most severe HFMD cases, with large and frequent epidemics of the virus recorded worldwide. Although major advances have been made in the development of a potential EV-A71 vaccine, there is no current prevention and little is known about the patterns and dynamics of EV-A71 spread. In this study we utilize full-length genome sequence data obtained from HFMD patients in Viet Nam, a geographical region where the disease has been endemic since 2003, to characterize the phylodynamics of this important emerging virus. |
| Tuberculin skin tests versus interferon-gamma release assays in tuberculosis screening among immigrant visa applicants
Chuke SO , Yen NT , Laserson KF , Phuoc NH , Trinh NA , Nhung DT , Mai VT , Qui AD , Hai HH , Loan le TH , Jones WG , Whitworth WC , Shah JJ , Painter JA , Mazurek GH , Maloney SA . Tuberc Res Treat 2014 2014 217969 OBJECTIVE: Use of tuberculin skin tests (TSTs) and interferon gamma release assays (IGRAs) as part of tuberculosis (TB) screening among immigrants from high TB-burden countries has not been fully evaluated. METHODS: Prevalence of Mycobacterium tuberculosis infection (MTBI) based on TST, or the QuantiFERON-TB Gold test (QFT-G), was determined among immigrant applicants in Vietnam bound for the United States (US); factors associated with test results and discordance were assessed; predictive values of TST and QFT-G for identifying chest radiographs (CXRs) consistent with TB were calculated. RESULTS: Of 1,246 immigrant visa applicants studied, 57.9% were TST positive, 28.3% were QFT-G positive, and test agreement was 59.4%. Increasing age was associated with positive TST results, positive QFT-G results, TST-positive but QFT-G-negative discordance, and abnormal CXRs consistent with TB. Positive predictive values of TST and QFT-G for an abnormal CXR were 25.9% and 25.6%, respectively. CONCLUSION: The estimated prevalence of MTBI among US-bound visa applicants in Vietnam based on TST was twice that based on QFT-G, and 14 times higher than a TST-based estimate of MTBI prevalence reported for the general US population in 2000. QFT-G was not better than TST at predicting abnormal CXRs consistent with TB. |
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