Advanced Molecular Detection Clips Content (Published on 12/08/2016)
NEWS
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Modernizing our Public Health Surveillance Systems
[blog post] Yoon P. CDC/CSELS/DHIS -
Developing Forward Looking Software at CDC
[blog post] Nasr J. CDC/CSELS/DHIS -
Rare Superbug Gene Discovered on U.S. Pig Farm
Fox M. NBC News, Dec 6, 2016. -
Fear, Then Skepticism, Over Antibiotic-Resistant Genes in Beijing Smog
Tatlow DK. -
Startup spotlight: Extracting RNA to diagnose diseases on the cheap
Keshavan M. STAT, Dec 8, 2016. -
Metagenomics Shows Potential for Foodborne Pathogen Outbreak Investigations
Thomas UG. GenomeWeb, Dec 8, 2016. -
New, more effective strategy for producing flu vaccines
[press release, Univ Wisconsin] Eurekalert, Dec 5, 2016. -
Missing Link in Malaria Evolution Discovered in Historical Specimens
Henry BA. The Scientist, Dec 1, 2016.
CONCEPTS / COMMENTS
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As the bat flies
Hayman DT. Science, Dec 2, 2016. -
The Pangenome: Are Single Reference Genomes Dead?
Offord C. The Scientist, Dec 1, 2016. -
Antibiotic resistance in the wild: an eco-evolutionary perspective.
Hiltunen Teppo et al. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2017 Jan (1712) -
How Chikungunya Virus Virology Affects Its Epidemiology and Transmission: Implications for Influencing Public Health.
Powers Ann M et al. The Journal of infectious diseases 2016 Dec (suppl 5) S449-S452 -
Tracking Insecticide Resistance in Mosquito Vectors of Arboviruses: The Worldwide Insecticide resistance Network (WIN).
Corbel Vincent et al. PLoS neglected tropical diseases 2016 Dec (12) e0005054
METHODS / TOOLS
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Microreact: visualizing and sharing data for genomic epidemiology and phylogeography
Argimon S, et al. Microb Genom, Nov 30, 2016. -
Virus Variation Resource - improved response to emergent viral outbreaks.
Hatcher Eneida L et al. Nucleic acids research 2016 Nov -
MRPrimerV: a database of PCR primers for RNA virus detection.
Kim Hyerin et al. Nucleic acids research 2016 Nov -
MEGARes: an antimicrobial resistance database for high throughput sequencing.
Lakin Steven M et al. Nucleic acids research 2016 Nov -
MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing.
Parikh Hardik I et al. BMC bioinformatics 2016 Dec (1) 491 -
Direct identification of antibiotic resistance genes on single plasmid molecules using CRISPR/Cas9 in combination with optical DNA mapping.
Müller Vilhelm et al. Scientific reports 2016 Dec 37938 -
Construction of Small-Insert and Large-Insert Metagenomic Libraries.
Simon Carola et al. Methods in molecular biology (Clifton, N.J.) 2017 1-12 -
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.
Wattam Alice R et al. Nucleic acids research 2016 Nov -
EvalMSA: A Program to Evaluate Multiple Sequence Alignments and Detect Outliers.
Chiner-Oms Alvaro et al. Evolutionary bioinformatics online 2016 277-284
EVOLUTION / ECOLOGY / POPULATIONS
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The Establishment and Diversification of Epidemic-Associated Serogroup W Meningococcus in the African Meningitis Belt, 1994 to 2012.
Retchless Adam C et al. mSphere (6) -
Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster.
Arora Natasha et al. Nature microbiology 2016 Dec 16245 -
Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population.
Clark Clifford G et al. BMC genomics 2016 Dec (1) 990 -
Bacillus cereus-induced food-borne outbreaks in France, 2007 to 2014: epidemiology and genetic characterisation
Glasset B, et al. Euro Surveill, Dec 2016. -
Molecular surveillance of dengue in Minas Gerais provides insights on dengue virus 1 and 4 circulation in Brazil.
Dutra Karina Rocha et al. Journal of medical virology 2016 Nov -
Molecular diversity of human parvovirus B19 during two outbreaks of erythema infectiosum in Brazil.
Garcia Rita de Cássia Nasser Cubel et al. The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases 2016 Nov -
Molecular characterization and genotype shift of dengue virus strains between 2001 and 2014 in Guangzhou.
Jiang L Y et al. Epidemiology and infection 2016 Dec 1-6 -
Comparative sequence analysis of Cyclospora cayetanensis apicoplast genomes originating from diverse geographical regions.
Cinar Hediye Nese et al. Parasites & vectors 2016 Nov (1) 611
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Multiple- locus variable-number tandem-repeat analysis (MLVA) of Shigella sonnei isolates of 2012 outbreak I. R. Iran.
Bakhshi Bita et al. Microbial pathogenesis 2016 Nov 69-73
DETECTION / DIAGNOSIS
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Are Escherichia coli Pathotypes Still Relevant in the Era of Whole-Genome Sequencing?
Robins-Browne Roy M et al. Frontiers in cellular and infection microbiology 2016 141 -
Rapid detection and evolutionary analysis of Legionella pneumophila serogroup 1 sequence type 47.
Mentasti M et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2016 Nov -
Development of a multiplex taqMan real-time PCR assay for typing of Mycoplasma pneumoniae based on type-specific indels identified through whole genome sequencing.
Wolff Bernard J et al. Diagnostic microbiology and infectious disease 2016 Nov -
A Molecular Approach Applied to Enteroviruses Surveillance in Northern Taiwan, 2008-2012.
Chung Wan-Yu et al. PloS one 2016 (12) e0167532 -
DNA Microarray Detection of 18 Important Human Blood Protozoan Species.
Chen Mu-Xin et al. PLoS neglected tropical diseases 2016 Dec (12) e0005160 -
Evaluation of the Illumigene Malaria LAMP: A Robust Molecular Diagnostic Tool for Malaria Parasites.
Lucchi Naomi W et al. Scientific reports 2016 Nov 36808
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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An international invasive meningococcal disease outbreak due to a novel and rapidly expanding serogroup W strain, Scotland and Sweden, July to August 2015.
Lucidarme Jay et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2016 Nov (45) -
Outbreak of Klebsiella pneumoniae Carbapenemase-Producing Citrobacter freundii at a Tertiary Acute Care Facility in Miami, Florida.
Jiménez Adriana et al. Infection control and hospital epidemiology 2016 Dec 1-7 -
Notes from the Field: Investigation of Elizabethkingia anophelis Cluster - Illinois, 2014-2016.
Navon Livia et al. MMWR. Morbidity and mortality weekly report 2016 Dec (48) 1380-1381 -
Transmission of multidrug-resistant Mycobacterium tuberculosis in Shanghai, China: a retrospective observational study using whole-genome sequencing and epidemiological investigation.
Yang Chongguang et al. The Lancet. Infectious diseases 2016 Dec
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Generation of influenza A viruses as live but replication-incompetent virus vaccines
Si L, et al. Science, Dec 2, 2016. -
Evaluation of anti-Zika virus activities of broad-spectrum antivirals and NIH clinical collection compounds using a cell-based, high-throughput screen assay.
Adcock Robert S et al. Antiviral research 2016 Dec
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Jan 23, 2025