Advanced Molecular Detection Clips Content (Published on 12/12/2024)
NEWS
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Novel strain of extensively drug-resistant Shigella identified in Los Angeles
Dall C. CIDRAP, Dec 10, 2024. -
Wuhan lab samples hold no close relatives to virus behind COVID
Mallapaty S. Nature, Dec 6, 2024. -
USDA launching mandatory national milk testing program to track H5N1 flu outbreak in cows
Branswell H. STAT, Dec 6, 2024. -
Bird flu in California child related to virus in dairy cows, CDC says
Sun LH. Washington Post, Dec 10, 2024. -
Why hasn’t the bird flu pandemic started?
Kupferschmidt K. Science, Dec 5, 2024. -
Poliovirus keeps popping up in European wastewater, perplexing and worrying scientists
Roberts L. Science, Dec 11, 2024. -
Review reveals 22 viruses, some with pandemic potential, in semen
Soucheray S. CIDRAP, Dec 11, 2024. -
Scientists Built a Tiny DNA ‘Hand’ That Grabs Viruses to Stop Infections
Bassi M. Gizmodo, Dec 7, 2024.
CONCEPTS / COMMENTS
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Controlling minor outbreaks is necessary to prepare for major pandemics.
Adam J Kucharski et al. PLoS Biol 2024 12 (12) e3002945 -
Pathogen genomics in healthcare: overcoming barriers to proactive surveillance.
Alexander J Sundermann et al. Antimicrob Agents Chemother 2024 12 e0147924
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Perceptions of Molecular HIV Surveillance Among Men Who Have Sex with Men in the United States.
Marisol Valenzuela Lara et al. AIDS Behav 2024 12
METHODS / TOOLS
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primerForge: a Python program for identifying primer pairs capable of distinguishing groups of genomes from each other.
Joseph S Wirth et al. J Open Source Softw 2024 12 (101)
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Validation and implementation of whole-genome sequencing-based analytical methods for molecular surveillance and relatedness analysis of Mycobacterium tuberculosis complex isolates at a national reference laboratory.
Diana Espadinha et al. Heliyon 2024 12 (22) e40279
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Viral concentration method biases in the detection of viral profiles in wastewater.
Naeema Cheshomi et al. Appl Environ Microbiol 2024 12 e0133924 -
Orthopoxvirus Genome Sequencing, Assembly, and Analysis.
Crystal M Gigante et al. Methods Mol Biol 2024 12 39-63
EVOLUTION / ECOLOGY / POPULATIONS
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Zoonotic Surveillance of Bartonella spp.: Exploring the Public Health Risks in Human Settlements.
Mukesh Thakur et al. Zoonoses Public Health 2024 12 -
A One Health Investigation into H5N1 Avian Influenza Virus Epizootics on Two Dairy Farms.
Ismaila Shittu et al. Clin Infect Dis 2024 12 -
Advancing West Nile virus monitoring through whole genome sequencing: Insights from a One Health genomic surveillance study in Romagna (Italy).
Martina Brandolini et al. One Health 2024 12 100937 -
Ongoing Evolution of Middle East Respiratory Syndrome Coronavirus, Saudi Arabia, 2023-2024.
Ahmed M Hassan et al. Emerg Infect Dis 2024 12 (1)
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Emerging epidemic of the Africa-type plasmid in penicillinase-producing Neisseria gonorrhoeae in Guangdong, China, 2013-2022.
Xiao-Lin Qin et al. Emerg Microbes Infect 2024 12 2440489 -
Prevalence and virulence of Vibrio parahaemolyticus isolated from clinical and environmental samples in Huzhou, China.
Peng Zhang et al. BMC Genomics 2024 12 (1) 1187 -
Machine learning-based prediction of antibiotic resistance in Mycobacterium tuberculosis clinical isolates from Uganda.
Sandra Ruth Babirye et al. BMC Infect Dis 2024 12 (1) 1391 -
Pandrug-resistant Klebsiella pneumoniae isolated from Ukrainian war victims are hypervirulent.
Oskar Ljungquist et al. J Infect 2024 10 (6) 106312 -
Using genomics to explore the epidemiology of vancomycin resistance in a sewage system.
Emilie Egholm Bruun Jensen et al. Microbiol Spectr 2024 12 e0148924
DETECTION / DIAGNOSIS
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Development of a large-scale rapid LAMP diagnostic testing platform for pandemic preparedness and outbreak response.
Rinie van Beuningen et al. Biol Methods Protoc 2024 12 (1) bpae090 -
Monitoring sewage and effluent water is an effective approach for the detection of the mobile colistin resistance genes (mcr) and associated bacterial hosts in the human population and environment in the USA.
Jouman Hassan et al. Environ Pollut 2024 12 125515 -
Trends and impacts of SARS-CoV-2 genome sharing: a comparative analysis of China and the global community, 2020-2023.
Yenan Feng et al. Front Public Health 2024 12 1491623
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A MALDI-TOF MS-based multiple detection panel of drug resistance-associated multiple single-nucleotide polymorphisms in Candida tropicalis.
Feifei Wan et al. Microbiol Spectr 2024 12 e0076424
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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An Investigation of Salmonella Senftenberg Illnesses in the United States Linked to Peanut Butter-2022.
Brooke M Whitney et al. Foodborne Pathog Dis 2024 12
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Mycobacterium tuberculosis pseudo-outbreak due to laboratory cross-contamination: A molecular epidemiology outbreak investigation.
Nayla Léveillé et al. Can Commun Dis Rep 2024 12 (12) 430-435
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Spatiotemporal evolution and transmission dynamics of Alpha and Delta SARS-CoV-2 variants contributing to sequential outbreaks in Cambodia during 2021.
Yvonne C F Su et al. Commun Med (Lond) 2024 11 (1) 252
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Identifying the unknown: Application of molecular epidemiology tools to identify clustering and HIV transmission routes in Poland.
Marcin Horecki et al. Infect Genet Evol 2024 12 105699
HOST-MICROBE INTERACTIONS
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Oral microbiome alpha diversity and all-cause, cardiovascular, and non-cardiovascular mortality in US adults: Evidence from the NHANES 2009-2019.
Rajib Mondal et al. Atherosclerosis 2024 12 119074
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indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Jan 16, 2025

