Advanced Molecular Detection Clips Content (Published on 11/24/2020)
NEWS
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A traveler tested negative for covid-19 before a flight. He had the virus and infected 4 passengers.
McMahon S. Washington Post, Nov 20, 2020. -
Evidence Builds That an Early Mutation Made the Pandemic Harder to Stop
Glanz J, et al. New York Times, Nov 24, 2020.
CONCEPTS / COMMENTS
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Ten simple rules for writing a paper about scientific software.
Romano Joseph D et al. PLoS computational biology 2020 Nov (11) e1008390 -
Superspreading events in the transmission dynamics of SARS-CoV-2: Opportunities for interventions and control.
Althouse Benjamin M et al. PLoS biology 2020 Nov (11) e3000897 -
SARS-CoV-2 and the human-animal interface: outbreaks on mink farms.
Koopmans Marion et al. The Lancet. Infectious diseases 2020 Nov -
Genomics in the era of COVID-19: ethical implications for clinical practice and public health.
Geller Gail et al. Genome medicine 2020 11 (1) 95 -
Transparency, trust, and community welfare: towards a precision public health ethics framework for the genomics era.
Juengst Eric T et al. Genome medicine 2020 Nov (1) 98
METHODS / TOOLS
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Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises.
Timme Ruth E et al. Scientific data 2020 Nov (1) 402 -
Hogwash: three methods for genome-wide association studies in bacteria.
Saund Katie et al. Microbial genomics 2020 Nov -
coronapp: A Web Application to Annotate and Monitor SARS-CoV-2 Mutations.
Mercatelli Daniele et al. Journal of medical virology 2020 Nov -
Stability of SARS-CoV-2 phylogenies.
Turakhia Yatish et al. PLoS genetics 2020 Nov (11) e1009175
EVOLUTION / ECOLOGY / POPULATIONS
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Trends in Population Dynamics of Escherichia coli Sequence Type 131, Calgary, Alberta, Canada, 2006-2016 1 .
Peirano Gisele et al. Emerging infectious diseases 2020 Dec (12) 2907-2915 -
Transmission of Multidrug-Resistant Salmonella enterica Subspecies enterica 4,[5],12:i:- Sequence Type 34 between Europe and the United States.
Elnekave Ehud et al. Emerging infectious diseases 2020 Dec (12) 3034-3038 -
Detection and Characterization of Bat Sarbecovirus Phylogenetically Related to SARS-CoV-2, Japan.
Murakami Shin et al. Emerging infectious diseases 2020 Dec (12) 3025-3029 -
Low Pathogenicity Avian Influenza (H5N2) Viruses, Dominican Republic.
Chung David H et al. Emerging infectious diseases 2020 Dec (12) 3094-3096 -
Dominant subtype switch in avian influenza viruses during 2016-2019 in China.
Bi Yuhai et al. Nature communications 2020 11 (1) 5909 -
A Novel Sub-Lineage of Chikungunya Virus East/Central/South African Genotype Indian Ocean Lineage Caused Sequential Outbreaks in Bangladesh and Thailand.
Phadungsombat Juthamas et al. Viruses 2020 Nov (11) -
Enhanced Zika virus susceptibility of globally invasive Aedes aegypti populations.
Aubry Fabien et al. Science (New York, N.Y.) 2020 Nov (6519) 991-996
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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A hybrid plasmid formed by recombination of a virulence plasmid and a resistance plasmid in Klebsiella pneumoniae.
Xie Miaomiao et al. Journal of global antimicrobial resistance 2020 Nov -
Population structure of Salmonella enterica serotype Mbandaka reveals similar virulence potential irrespective of source and phylogenomic stratification.
Antony Linto et al. F1000Research 2020 1142 -
Evaluating the effects of SARS-CoV-2 Spike mutation D614G on transmissibility and pathogenicity
Volz E, et al. Cell, Nov 18, 2020. -
Tick-transmitted thogotovirus gains high virulence by a single MxA escape mutation in the viral nucleoprotein.
Fuchs Jonas et al. PLoS pathogens 2020 Nov (11) e1009038 -
Functional Characterization of Circulating Mumps Viruses with Stop Codon Mutations in the Small Hydrophobic Protein.
Stinnett Rita Czakó et al. mSphere 2020 Nov (6)
DETECTION / DIAGNOSIS
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An explainable machine learning platform for pyrazinamide resistance prediction and genetic feature identification of Mycobacterium tuberculosis.
Zhang Andrew et al. Journal of the American Medical Informatics Association : JAMIA 2020 Nov -
Occurrence of Listeria monocytogenes in Counter-Sliced Turkey Meat Samples from Independent Delis in New York City.
Mujahid Sana et al. Journal of food protection 2020 Nov -
Evaluation of TaqMan Array card (TAC) for the detection of 28 respiratory pathogens.
Liu Keke et al. BMC infectious diseases 2020 Nov (1) 820 -
Whole-genome sequencing of clinical Clostridioides difficile isolates reveals molecular epidemiology and discrepancies with conventional laboratory diagnostic testing.
McLean K et al. The Journal of hospital infection 2020 Nov -
Evaluation on the use of Nanopore sequencing for direct characterization of coronaviruses from respiratory specimens, and a study on emerging missense mutations in partial RdRP gene of SARS-CoV-2
Chan WS, et al. Virol J, Nov 23, 2020. -
A simple direct RT-LAMP SARS-CoV-2 saliva diagnostic
Flynn MJ, et al. medRxiv, Nov 22, 2020. -
Correlation between Negative Rapid Influenza Diagnostic Test and Severe Disease in Hospitalized Adults with Laboratory-Confirmed Influenza Virus Infection.
Huang Po-Yen et al. The American journal of tropical medicine and hygiene 2020 10 (4) 1642-1648 -
Molecular Tools for Detection and Identification of Paracoccidioides Species: Current Status and Future Perspectives.
Pinheiro Breno Gonçalves et al. Journal of fungi (Basel, Switzerland) 2020 Nov (4) -
An Atypical Case of Autochthonous Cutaneous Leishmaniasis Associated with Naturally Infected Phlebotomine Sand Flies in Texas, United States.
Kipp Evan J et al. The American journal of tropical medicine and hygiene 2020 10 (4) 1496-1501 -
Antibody epitope repertoire analysis enables rapid antigen discovery and multiplex serology.
Kamath Kathy et al. Scientific reports 2020 03 (1) 5294
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Genomic Epidemiology of Severe Acute Respiratory Syndrome Coronavirus 2, Colombia.
Laiton-Donato Katherine et al. Emerging infectious diseases 2020 Dec (12) 2854-2862 -
Flight-Associated Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 Corroborated by Whole-Genome Sequencing.
Speake Hollie et al. Emerging infectious diseases 2020 Dec (12) 2872-2880 -
SARS-CoV-2 Natural Transmission from Human to Cat, Belgium, March 2020.
Garigliany Mutien et al. Emerging infectious diseases 2020 Dec (12) 3069-3071 -
Phylogeography of SARS-CoV-2 pandemic in Spain: a story of multiple introductions, micro-geographic stratification, founder effects, and super-spreaders.
Gómez-Carballa Alberto et al. Zoological research 2020 Nov (6) 605-620 -
Evidence of Severe Acute Respiratory Syndrome Coronavirus 2 Reinfection After Recovery from Mild Coronavirus Disease 2019.
Lee Jee-Soo et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2020 Nov -
Genomic epidemiology of superspreading events in Austria reveals mutational dynamics and transmission properties of SARS-CoV-2
Popa A, et al. Sci Transl Med, 2020 Nov 23;eabe2555. -
Characterising the epidemic spread of influenza A/H3N2 within a city through phylogenetics.
Müller Nicola F et al. PLoS pathogens 2020 Nov (11) e1008984 -
Direct Transmission of Severe Fever with Thrombocytopenia Syndrome Virus from Domestic Cat to Veterinary Personnel.
Yamanaka Atsushi et al. Emerging infectious diseases 2020 Dec (12) 2994-2998
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Vaccination of contacts of Ebola virus disease survivors to prevent further transmission.
Doshi Reena H et al. The Lancet. Global health 2020 Dec (12) e1455-e1456
HOST-MICROBE INTERACTIONS
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Unbiased optical mapping of telomere-integrated endogenous human herpesvirus 6
Wight DJ, et al. Proc Natl Acad Sci, Nov 23, 2020. -
Body mass index and risk of dying from a bloodstream infection: A Mendelian randomization study.
Rogne Tormod et al. PLoS medicine 2020 Nov (11) e1003413


Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Genomics and Precision Public Health to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Sep 21, 2023
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