Advanced Molecular Detection Clips Content (Published on 11/19/2020)
NEWS
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Study suggests mass azithromycin may promote resistance to other antibiotics
Dall C. CIDRAP, Nov 13, 2020. -
Wellcome calls for more focused antimicrobial resistance agenda
Dall C. CIDRAP, Nov 18, 2020. -
New polio vaccine could boost faltering eradication drive
Roberts L. Science, Nov 13, 2020. -
SARS-CoV-2 Genome Study Reveals Dominant Strain
Genome Web, Nov 13, 2020. -
Study: Only 1 of 32 COVID survivors testing positive had live virus
Kuebelbeck S. CIDRAP, Nov 12, 2020. -
Coronavirus (COVID-19) Update: FDA Authorizes First COVID-19 Test for Self-Testing at Home
(news release) FDA, Nov 17, 2020. -
SARS-CoV-2 Pandemic Driving Labs to Build Out Information Systems to Support DTC Testing
Bonislawski A. 360dx, Nov 10, 2020. -
Scripps Research & UCSD Scientists Use Genome Sequencing to Track Spread Of COVID-19
Coronado L. NBC 7 San Diego, Nov 12, 2020. -
More people are getting COVID-19 twice, suggesting immunity wanes quickly in some
de Vrieze J. Science, Nov 18, 2020. -
New Pfizer Results: Coronavirus Vaccine Is Safe and 95% Effective
Thomas K. New York Times, Nov 18, 2020. -
Early Data Show Moderna's Coronavirus Vaccine Is 94.5% Effective
Thomas D. New York Times, Nov 16, 2020.
EVENTS / TRAINING / WEB RESOURCES
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Rapid Expert Consultation on Critical Issues in Diagnostic Testing for the COVID-19 Pandemic (November 9, 2020)
(report) NASEM, Nov 9, 2020.
CONCEPTS / COMMENTS
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Clinical Perspectives in Integrating Whole Genome Sequencing into the Investigation of Healthcare and Public Health Outbreaks - Hype or Help?
Parcell Benjamin J et al. The Journal of hospital infection 2020 Nov
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Understanding protection from SARS-CoV-2 by studying reinfection
Overbaugh J. Nat Med, 2020; 26:1680?1681. -
Engineered antibodies to combat viral threats
Yu X, Cragg MS. Nature, Nov 18, 2020.
METHODS / TOOLS
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Complete microbial genomes for public health in Australia and the Southwest Pacific.
Baines Sarah L et al. Microbial genomics 2020 Nov
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PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks.
Berbel Caban Ana et al. Genome medicine 2020 Nov (1) 96 -
The Most Frequently Used Sequencing Technologies and Assembly Methods in Different Time Segments of the Bacterial Surveillance and RefSeq Genome Databases.
Segerman Bo et al. Frontiers in cellular and infection microbiology 2020 527102
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Wastewater-based Epidemiology for Averting COVID-19 Outbreaks on The University of Arizona Campus
Betancourt WW, et al. medRxiv, Nov 16, 2020.
EVOLUTION / ECOLOGY / POPULATIONS
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Unravelling the importance of the eukaryotic and bacterial communities and their relationship with Legionella spp. ecology in cooling towers: a complex network.
Paranjape Kiran et al. Microbiome 2020 Nov (1) 157 -
Genetic Traces of the Francisella tularensis Colonization of Spain, 1998-2020.
Myrtennäs Kerstin et al. Microorganisms 2020 Nov (11) -
A Nationwide Outbreak of Invasive Pneumococcal Disease in Israel Caused by Streptococcus Pneumoniae Serotype 2.
Dagan Ron et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2020 Nov
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Genomic and Phenotypic Characterisation of Campylobacter jejuni Isolates From a Waterborne Outbreak.
Davies Emma et al. Frontiers in cellular and infection microbiology 2020 594856 -
Will a new clade of SARS-CoV-2 imported into the community spark a fourth wave of the COVID-19 outbreak in Hong Kong?
Siu Gilman Kit-Hang et al. Emerging microbes & infections 2020 Nov 1-19 -
A Distinct Phylogenetic Cluster of Indian Severe Acute Respiratory Syndrome Coronavirus 2 Isolates.
Banu Sofia et al. Open forum infectious diseases 2020 Nov (11) ofaa434 -
Analysis of genomic distributions of SARS-CoV-2 reveals a dominant strain type with strong allelic associations.
Yang Hsin-Chou et al. Proceedings of the National Academy of Sciences of the United States of America 2020 Nov -
Phylogenetic Investigation of Norovirus Transmission between Humans and Animals.
Villabruna Nele et al. Viruses 2020 Nov (11) -
Genetic and Antigenic Evolution of European Swine Influenza A Viruses of HA-1C (Avian-Like) and HA-1B (Human-Like) Lineages in France from 2000 to 2018.
Chastagner Amélie et al. Viruses 2020 Nov (11) -
Mitochondrial Genome Sequences of the Emerging Fungal Pathogen Candida auris .
Misas Elizabeth et al. Frontiers in microbiology 2020 560332
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Macrolide and Nonmacrolide Resistance with Mass Azithromycin Distribution.
Doan Thuy et al. The New England journal of medicine 2020 11 (20) 1941-1950
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Circulating microtranscriptome profiles reveal distinct expression of microRNAs in severe leptospirosis.
Limothai Umaporn et al. PLoS neglected tropical diseases 2020 Nov (11) e0008809 -
Sudden emergence of a Neisseria gonorrhoeae clade with reduced susceptibility to extended-spectrum cephalosporins, Norway.
Osnes Magnus N et al. Microbial genomics 2020 Nov -
Multidrug-Resistant Proteus mirabilis Strain with Cointegrate Plasmid.
Shelenkov Andrey et al. Microorganisms 2020 Nov (11) -
Whole genome sequencing to decipher the virulence phenotype of hypervirulent Klebsiella pneumoniae responsible for liver abscess, Marseille, France.
Baron Sophie Alexandra et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2020 Nov -
Genomic evidence supporting the clonal expansion of extensively drug resistant tuberculosis bacteria belonging to a rare Proto - Beijing genotype.
Srilohasin Prapaporn et al. Emerging microbes & infections 2020 Nov 1-28 -
Decoding Asymptomatic COVID-19 Infection and Transmission.
Wang Rui et al. The journal of physical chemistry letters 2020 Nov 10007-10015 -
Differential Expression of Viral Transcripts From Single-Cell RNA Sequencing of Moderate and Severe COVID-19 Patients and Its Implications for Case Severity.
Liu Teng et al. Frontiers in microbiology 2020 603509
DETECTION / DIAGNOSIS
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A custom amplicon sequencing approach to detect resistance associated mutations and sequence types in Mycoplasma genitalium.
Plummer E L et al. Journal of microbiological methods 2020 Oct 106089 -
Epidemiological situation, laboratory capacity and preparedness for carbapenem-resistant Acinetobacter baumannii in Europe, 2019.
Lötsch Felix et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2020 Nov (45)
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Is there a widespread clone of Serratia marcescens producing outbreaks worldwide?
Francés-Cuesta Carlos et al. The Journal of hospital infection 2020 Nov -
Carbapenemase-producing Enterobacterales causing secondary infections during the COVID-19 crisis at a New York City hospital.
Gomez-Simmonds Angela et al. The Journal of antimicrobial chemotherapy 2020 Nov -
The importance of using whole genome sequencing and extended spectrum beta-lactamase selective media when monitoring antimicrobial resistance.
Duggett Nicholas et al. Scientific reports 2020 11 (1) 19880 -
Molecular Monitoring of Enteropathogens in Sewage During NATO Exercise Trident Juncture 2018: Potential Tool in Early Outbreak Warning?
Ørmen Øyvind et al. Military medicine 2020 Nov -
Emergence of ciprofloxacin-resistant Neisseria meningitidis B from asymptomatic carriers during an outbreak in Peru, 2017.
Juscamayta-López Eduardo et al. Journal of medical microbiology 2020 Nov -
Demonstrating an Integrated Antibiotic Resistance Gene Surveillance Approach in Puerto Rican Watersheds Post-Hurricane Maria.
Davis Benjamin C et al. Environmental science & technology 2020 Nov -
Performance of Nucleic Acid Amplification Tests for Detection of Severe Acute Respiratory Syndrome Coronavirus 2 in Prospectively Pooled Specimens.
Wang Hannah et al. Emerging infectious diseases 2020 Nov (1) -
Long-distance airborne dispersal of SARS-CoV-2 in COVID-19 wards.
Nissen Karolina et al. Scientific reports 2020 11 (1) 19589 -
Assessment of SARS-CoV-2 RNA Test Results Among Patients Who Recovered From COVID-19 With Prior Negative Results.
Liotti Flora Marzia et al. JAMA internal medicine 2020 Nov
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Implementation of a Pooled Surveillance Testing Program for Asymptomatic SARS-CoV-2 Infections on a College Campus -- Duke University, Durham, North Carolina, August 2-October 11, 2020
Denny TN, et al. MMWR, Nov 17, 2020.
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Field-Adapted Full Genome Sequencing of Peste-Des-Petits-Ruminants Virus Using Nanopore Sequencing.
Torsson Emeli et al. Frontiers in veterinary science 2020 542724 -
Do I Have HIV or Not? Lack of RNA Detection and the Case for Sensitive DNA Testing.
Springer Sandra A et al. Open forum infectious diseases 2020 Nov (11) ofaa478
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Identification and Pilot Evaluation of Salivary Peptides from Anopheles albimanus as Biomarkers for Bite Exposure and Malaria Infection in Colombia.
Londono-Renteria Berlin et al. International journal of molecular sciences 2020 Jan (3)
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Whole genome sequencing analysis of multidrug-resistant tuberculosis in Singapore, 2006-2018.
Chee Cynthia B E et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2020 Nov -
Early transmission of SARS-CoV-2 in South Africa: An epidemiological and phylogenetic report.
Giandhari Jennifer et al. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 2020 Nov -
The impact of early public health interventions on SARS-CoV-2 transmission and evolution
Duchene S, et al. medRxiv, Nov 18, 2020. -
Large scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management
Page AJ, et al. medRxiv, Nov 16, 2020. -
SARS-CoV-2 Transmission between Mink (Neovison vison) and Humans, Denmark.
Hammer Anne Sofie et al. Emerging infectious diseases 2020 Nov (2) -
The Molecular Epidemiology and Transmission Dynamics of HIV Type 1 in a General Population Cohort in Uganda.
Ssemwanga Deogratius et al. Viruses 2020 Nov (11)
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Safety and Immunogenicity of Two RNA-Based Covid-19 Vaccine Candidates.
Walsh Edward E et al. The New England journal of medicine 2020 Oct -
Elicitation of Potent Neutralizing Antibody Responses by Designed Protein Nanoparticle Vaccines for SARS-CoV-2.
Walls Alexandra C et al. Cell 2020 Oct -
Safety and immunogenicity of ChAdOx1 nCoV-19 vaccine administered in a prime-boost regimen in young and old adults (COV002): a single-blind, randomised, controlled, phase 2/3 trial
Ramasamy N, et al. Lancet, Nov 18, 2020.
HOST-MICROBE INTERACTIONS
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Associations between blood type and COVID-19 infection, intubation, and death.
Zietz Michael et al. Nature communications 2020 11 (1) 5761 -
Host variables confound gut microbiota studies of human disease.
Vujkovic-Cvijin Ivan et al. Nature 2020 Nov -
The Role of the Gut Microbiome in Resisting Norovirus Infection as Revealed by a Human Challenge Study.
Patin N V et al. mBio 2020 Nov (6)
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Genomics and Precision Public Health to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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- Page last updated:Sep 21, 2023
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