Advanced Molecular Detection Clips Content (Published on 11/02/2017)
NEWS
-
U.S. needs to improve oversight of labs handling dangerous pathogens - report
Steenhuysen J. Reuters, Oct 31, 2017. -
CDC awards over $9 million to combat antibiotic resistance
Healio, Oct 27, 2017. -
MRIGlobal Demonstrates Nanopore Sequencing in the Field in Step Toward 'Lab-in-a-Backpack'
Heger M. GenomeWeb, Oct 27, 2017. -
Yellow fever virus found in semen of Brazilian patient
Healio, Oct 27, 2017. -
New Malaria Test Combines Loop-Mediated Isothermal Amplification, Nanopore Sequencing
Gilmore J. GenomeWeb, Oct 26, 2017.
EVENTS / TRAINING / WEB RESOURCES
-
New Influenza Virus Submission Wizard Makes Flu Sequence Submissions Easier
NCBI, Oct 25, 2017. -
Hidden Signals Challenge
DHS, Nov 1, 2017.
CONCEPTS / COMMENTS
-
Symbiosis: Viruses as Intimate Partners.
Roossinck Marilyn J et al. Annual review of virology 2017 Sep (1) 123-139 -
Virus Discovery by Metagenomics: The (Im)possibilities
Dutilh BE, et al. Front Microbiol, Sep 8, 2017. -
Microbiology: Crowdsourcing Earth's microbes
Raes J. Nature, Nov 1, 2017. -
Molecular versus culture-based testing for gastrointestinal infection.
Macfarlane-Smith Louissa R et al. Current opinion in gastroenterology 2017 Oct -
A CRISPR Way to Diagnose Infectious Diseases.
Caliendo Angela M et al. The New England journal of medicine 2017 10 (17) 1685-1687 -
HIV Drug Resistance - An Emerging Threat to Epidemic Control.
Beyrer Chris et al. The New England journal of medicine 2017 Oct (17) 1605-1607 -
Fitness cost and benefit of antimicrobial resistance in Neisseria gonorrhoeae: Multidisciplinary approaches are needed.
Unemo Magnus et al. PLoS medicine 2017 Oct (10) e1002423
METHODS / TOOLS
-
On site DNA barcoding by nanopore sequencing.
Menegon Michele et al. PloS one 2017 (10) e0184741 -
Next-Generation Sequencing Technologies and their Application to the Study and Control of Bacterial Infections.
Besser John et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2017 Oct -
PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens.
Zankari Ea et al. The Journal of antimicrobial chemotherapy 2017 Oct (10) 2764-2768 -
Unbiased Strain-Typing of Arbovirus Directly from Mosquitoes Using Nanopore Sequencing: A Field-forward Biosurveillance Protocol
Russell JA, et al. bioRxiv, Sep 4, 2017.
EVOLUTION / ECOLOGY / POPULATIONS
-
Microbial biodiversity assessment of the European Space Agency's ExoMars 2016 mission.
Koskinen Kaisa et al. Microbiome 2017 Oct (1) 143 -
The dynamics of molecular evolution over 60,000 generations.
Good Benjamin H et al. Nature 2017 Oct -
Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa.
Ashton Philip M et al. Genome medicine 2017 Oct (1) 92 -
Yersinia pestis strains of ancient phylogenetic branch 0.ANT are widely spread in the high-mountain plague foci of Kyrgyzstan.
Eroshenko Galina A et al. PloS one 2017 (10) e0187230 -
The evolution of seasonal influenza viruses.
Petrova Velislava N et al. Nature reviews. Microbiology 2017 Oct -
The diversification of Zika virus: Are there two distinct lineages?
Gong Zhen et al. Genome biology and evolution 2017 Oct -
Examining the human infectious reservoir for Plasmodium falciparum malaria in areas of differing transmission intensity.
Gonçalves Bronner P et al. Nature communications 2017 Oct (1) 1133
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
-
Investigation of next-generation sequencing data of Klebsiella pneumoniae using web-based tools.
Brhelova Eva et al. Journal of medical microbiology 2017 Oct -
Monitoring microevolution of OXA-48-producing Klebsiella pneumoniae ST147 in a hospital setting by SMRT sequencing.
Zautner Andreas E et al. The Journal of antimicrobial chemotherapy 2017 Oct (10) 2737-2744 -
Comparative Genomic Analysis of Globally Dominant ST131 Clone with Other Epidemiologically Successful Extraintestinal Pathogenic Escherichia coli (ExPEC) Lineages.
Shaik Sabiha et al. mBio 2017 Oct (5) -
Emergence and adaptation of a novel highly pathogenic H7N9 influenza virus in birds and humans from a 2013-human-infecting low pathogenic ancestor.
Qi Wenbao et al. Journal of virology 2017 Oct
DETECTION / DIAGNOSIS
-
Rapid infectious disease identification by next-generation DNA sequencing.
Ellis Jeremy E et al. Journal of microbiological methods 2017 Jul 12-19 -
Core Genome Multilocus Sequence Typing (cgMLST): A Standardized Approach for Molecular Typing of Mycoplasma gallisepticum.
Ghanem Mostafa et al. Journal of clinical microbiology 2017 Oct -
Detection of influenza C viruses among outpatients and patients hospitalized for severe acute respiratory infection, Minnesota, 2013-2016.
Thielen Beth K et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Oct -
Yellow Fever Virus in Urine and Semen of Convalescent Patient, Brazil.
Barbosa Carla M et al. Emerging infectious diseases 2018 Jan (1) -
Metagenomic arbovirus detection using MinION nanopore sequencing.
Batovska Jana et al. Journal of virological methods 2017 Nov 79-84
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
-
Frequent undetected MRSA ward-based transmission linked to patient sharing between hospitals
Auguet OT, et al. Clin Infect Dis, Oct 31, 2017. -
Long-lasting successful dissemination of resistance to oxazolidinones in MDR Staphylococcus epidermidis clinical isolates in a tertiary care hospital in France.
Dortet Laurent et al. The Journal of antimicrobial chemotherapy 2017 Oct -
Investigation of a Cluster of Sequence Type 22 Methicillin-Resistant Staphylococcus aureus Transmission in a Community Setting.
Toleman Michelle S et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2017 Oct -
Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community.
Coll Francesc et al. Science translational medicine 2017 Oct (413) -
Transmission network characteristics based on env and gag sequences from MSM during acute HIV-1 infection in Beijing, China.
Zhang Zhimin et al. Archives of virology 2017 Nov (11) 3329-3338 -
Epidemiology reveals Zhaotong City as the hub of human immunodeficiency virus type 1 transmission from the Yunnan province to other regions in China.
Ren Li et al. The Journal of general virology 2017 Nov -
Whole genome sequencing identifies influenza A H3N2 transmission and offers superior resolution to classical typing methods.
Meinel Dominik M et al. Infection 2017 Oct
ANTIMICROBIALS / VACCINES / INTERVENTIONS
-
Outbreak of Invasive Infections From Subtype emm26.3 Group A Streptococcus Among Homeless Adults-Anchorage, Alaska, 2016-2017.
Emily Mosites et al. Clin Infect Dis 2017 10 (7) 1068-1074
HOST-MICROBE INTERACTIONS
-
Genome-wide association and HLA region fine-mapping studies identify susceptibility loci for multiple common infections.
Tian Chao et al. Nature communications 2017 Sep (1) 599 -
Viruses in cancers among the immunosuppressed.
Arroyo Mühr Laila Sara et al. International journal of cancer 2017 Dec (12) 2498-2504 -
Pathogenesis of infections in HIV-infected individuals: insights from primary immunodeficiencies.
Zhang Qian et al. Current opinion in immunology 2017 Oct 122-133 -
Role of the Gastrointestinal Tract Microbiome in the Pathophysiology of Diabetes Mellitus.
Sohail Muhammad U et al. Journal of diabetes research 2017 9631435 -
Microbiome Associated with Severe Caries in Canadian First Nations Children.
Agnello M et al. Journal of dental research 2017 Nov (12) 1378-1385
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Jan 9, 2025