Advanced Molecular Detection Clips Content (Published on 11/02/2023)
NEWS
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GeoSeeq Foundation, Pasteur Network Partner for Infectious Disease Data Sharing
GenomeWeb, Oct 31, 2023. -
‘Groundbreaking’: first treatment targeting ‘super-gonorrhoea’ passes trial
Callaway E. Nature, Nov 1, 2023. -
River plastics found to carry pathogenic bacteria, resistance genes
Dall C. CIDRAP, Nov 1, 2023. -
What to Know About the JN.1 Variant
DePeau-Wilson M. MedPage Today, Oct 31, 2023. -
Wastewater switch
(blog post) Jetelina K. Your Local Epidemiologist, Nov 2, 2023.
EVENTS / TRAINING / WEB RESOURCES
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CDC’s Internal Control Weaknesses Led to its Initial Covid-19 Test Kit Failure, but CDC Ultimately Created a Working Test Kit
(report) Office of Inspector General, DHHS. Oct 2023.
CONCEPTS / COMMENTS
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Moving cholera vaccines ahead of the epidemic curve.
Ziad A Memish et al. Lancet 2023 10 -
Cache Valley virus: an emerging arbovirus of public and veterinary health importance.
Holly R Hughes et al. J Med Entomol 2023 10 -
Yellow Jack's Potential Return to the American South.
Peter J Hotez et al. N Engl J Med 2023 10 (16) 1445-1447 -
How the Orthodox Features of Orthopoxviruses Led to an Unorthodox Mpox Outbreak: What We've Learned, and What We Still Need to Understand.
John T Brooks et al. J Infect Dis 2023 10 -
The International Virus Bioinformatics Meeting 2023.
Franziska Hufsky et al. Viruses 2023 10 (10)
METHODS / TOOLS
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Merging short and stranded long reads improves transcript assembly.
Amoldeep S Kainth et al. PLoS Comput Biol 2023 10 (10) e1011576 -
Returning incidentally discovered Hepatitis C RNA-seq results to COPDGene study participants.
Edwin K Silverman et al. NPJ Genom Med 2023 10 (1) 36 -
The latent HIV reservoir: current advances in genetic sequencing approaches.
Preeti Moar et al. mBio 2023 10 e0134423 -
An integrated approach to the characterization of immune repertoires using AIMS: An Automated Immune Molecule Separator.
Christopher T Boughter et al. PLoS Comput Biol 2023 10 (10) e1011577
EVOLUTION / ECOLOGY / POPULATIONS
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Expansion of Invasive Group A Streptococcus M1 Lineage in Active Bacterial Core Surveillance, United States, 2019‒2021.
Yuan Li et al. Emerg Infect Dis 2023 8 (10) 2116-2120 -
New Research on the Bacillus anthracis Genetic Diversity in Siberia.
Vitalii Timofeev et al. Pathogens 2023 10 (10) -
Molecular Characterization of Lyssaviruses Originating from Domestic and Wild Cats Provides an Insight on the Diversity of Lyssaviruses and a Risk of Rabies Transmission to Other Susceptible Mammals and Humans in South Africa.
Kefentse Tsie et al. Pathogens 2023 10 (10) -
Genetic diversity and phylogenetic analyses of Asian lineage Zika virus whole genome sequences derived from Culex quinquefasciatus mosquitoes and urine of patients during the 2020 epidemic in Thailand.
Atchara Phumee et al. Sci Rep 2023 10 (1) 18470 -
Epidemiology Update of Hepatitis E Virus (HEV) in Uruguay: Subtyping, Environmental Surveillance and Zoonotic Transmission.
Florencia Cancela et al. Viruses 2023 10 (10)
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Chance Favors the Prepared Genomes: Horizontal Transfer Shapes the Emergence of Antibiotic Resistance Mutations in Core Genes.
Charles Coluzzi et al. Mol Biol Evol 2023 10 (10) -
The clinical, genomic, and microbiological profile of invasive multi-drug resistant Escherichia coli in a major teaching hospital in the United Kingdom.
William L Hamilton et al. Microb Genom 2023 10 (10) -
Bayesian modeling of the impact of antibiotic resistance on the efficiency of MRSA decolonization.
Fanni Ojala et al. PLoS Comput Biol 2023 10 (10) e1010898 -
Bacterial genome-wide association study substantiates papGII of Escherichia coli as a major risk factor for urosepsis.
Aline Cuénod et al. Genome Med 2023 10 (1) 89 -
Prevalence of SARS-CoV-2 Omicron Sublineages and Spike Protein Mutations Conferring Resistance against Monoclonal Antibodies in a Swedish Cohort during 2022-2023.
Jonathan Haars et al. Microorganisms 2023 10 (10)
DETECTION / DIAGNOSIS
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CRISPR/Cas and Argonaute-Based Biosensors for Pathogen Detection.
Zhiruo Yang et al. ACS Sens 2023 10 (10) 3623-3642 -
Domestic and wild animal samples and diagnostic testing for SARS-CoV-2.
Megan R Miller et al. Vet Q 2023 10 (1) 1-11 -
SARS-CoV-2 Variants BQ.1 and XBB.1.5 in Wastewater of Aircraft Flying from China to Denmark, 2023.
Amanda Gammelby Qvesel et al. Emerg Infect Dis 2023 10 (12) -
Wastewater sequencing reveals community and variant dynamics of the collective human virome.
Michael Tisza et al. Nat Commun 2023 10 (1) 6878 -
Wastewater Surveillance in Europe for Non-Polio Enteroviruses and Beyond.
Laura Bubba et al. Microorganisms 2023 10 (10) -
Evidence for a role of Anopheles stephensi in the spread of drug and diagnosis-resistant malaria in Africa.
Tadele Emiru et al. Nat Med 2023 10
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Inferring bacterial transmission dynamics using deep sequencing genomic surveillance data.
Madikay Senghore et al. Nat Commun 2023 11 (1) 6397 -
Anthropogenic Transmission of SARS-CoV-2 from Humans to Lions, Singapore, 2021.
Yin Cheong Aden Ip et al. Emerg Infect Dis 2023 10 (12) -
Representativeness of whole-genome sequencing approaches in England: the importance for understanding inequalities associated with SARS-CoV-2 infection.
Katherine A Twohig et al. Epidemiol Infect 2023 9 e169 -
Complex norovirus transmission dynamics at hospital wards revealed by deep sequencing.
Julia Widström et al. J Clin Microbiol 2023 10 e0060823 -
Leveraging social networks for identification of people living with HIV who are virally unsuppressed.
Breschine Cummins et al. AIDS 2023 10
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Fecal microbiota transplantation promotes reduction of antimicrobial resistance by strain replacement.
Michael H Woodworth et al. Sci Transl Med 2023 11 (720) eabo2750
HOST-MICROBE INTERACTIONS
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A citizen-science-enabled catalogue of the vaginal microbiome and associated factors.
Sarah Lebeer et al. Nat Microbiol 2023 10 -
The Isala project’s empowered new insights into the vaginal microbiome and women’s health
Lebeer S. Nature, Oct 26, 2023. -
SARS-CoV-2 variants evolve convergent strategies to remodel the host response.
Mehdi Bouhaddou et al. Cell 2023 9 (21) 4597-4614.e26 -
Distinguishing features of long COVID identified through immune profiling.
Jon Klein et al. Nature 2023 9 (7985) 139-148 -
An atlas of continuous adaptive evolution in endemic human viruses.
Kathryn E Kistler et al. Cell Host Microbe 2023 10
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![Brand](/GAPPKB/images/implementation.jpg)
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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