Advanced Molecular Detection Clips Content (Published on 10/13/2016)
CDC funds 34 innovative projects to combat antibiotic resistance
(news release) CDC, Oct 6, 2016.
Floridas Feud Over Zika-Fighting GMO Mosquitoes
Kolker J. Bloomberg, Oct 6, 2016.
Who is immune to Zika?
Keener AB. The Scientist, Oct 11, 2016.
Point-of-Care Diagnostic Promising for Detection of Chikungunya Virus
Larkin M. Medscape, Oct 5, 2016.
Got Zika? Lab Constraints Mean It's Often Hard to Know
Luthra S. Medscape, Oct 7, 2016.
NIST Team Explores Alternative to Graphene for Nanopore Sequencing
Heger M. GenomeNews, Oct 11, 2016.
EVENTS / TRAINING / WEB RESOURCES
Announcing Second Public Workshop on Promoting Semantic Interoperability of Laboratory Data
(workshop) National Library of Medicine, NIH, Bethesda, MD. Nov 8, 8:00 - 5:00. Comments due Dec 9, 2016.
What Is Stopping the Use of Genetically Modified Insects for Disease Control?
Panjwani Anusha et al. PLoS pathogens 2016 Oct (10) e1005830
METHODS / TOOLS
Efficient Enrichment of Bacterial mRNA from Host-Bacteria Total RNA Samples.
Kumar Nikhil et al. Scientific reports 2016 Oct 34850
NEAT: a framework for building fully automated NGS pipelines and analyses.
Schorderet Patrick et al. BMC bioinformatics 2016 Feb 53
A Method for Bioinformatic Analysis of Transposon Insertion Sequencing (INSeq) Results for Identification of Microbial Fitness Determinants.
Wang Nengding et al. Methods in molecular biology (Clifton, N.J.) 2017 243-253
SCOTTI: Efficient Reconstruction of Transmission within Outbreaks with the Structured Coalescent.
De Maio Nicola et al. PLoS computational biology 2016 Sep (9) e1005130
A multicenter study benchmarks software tools for label-free proteome quantification.
Navarro Pedro et al. Nature biotechnology 2016 Oct
Influenza Research Database: An integrated bioinformatics resource for influenza virus research.
Zhang Yun et al. Nucleic acids research 2016 Sep
The past, present and future of microbiome analyses
White RA, et al. Nat Protoc, Sep 29, 2016.
EVOLUTION / ECOLOGY / POPULATIONS
Major Shift of Toxigenic V. cholerae O1 from Ogawa to Inaba Serotype Isolated from Clinical and Environmental Samples in Haiti.
Alam Meer T et al. PLoS neglected tropical diseases 2016 Oct (10) e0005045
Acquisition and loss of virulence-associated factors during genome evolution and speciation in three clades of Bordetella species.
Linz Bodo et al. BMC genomics 2016 Sep (1) 767
Genomic tracks behind spread of bacteremic Group A Streptococcus type emm89 in Finland, 2004-2014.
Latronico Francesca et al. The Journal of infectious diseases 2016 Oct
Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes.
Moura Alexandra et al. Nature microbiology 2016 Oct 16185
Evolutionary history and spatiotemporal dynamics of DENV-1 genotype V in the Americas.
de Bruycker-Nogueira Fernanda et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Oct
Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification.
Sobel Leonard Ashley et al. Journal of virology 2016 Oct
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
Comparison by multi-locus variable-number tandem repeat analysis and antimicrobial resistance among atypical enteropathogenic Escherichia coli strains isolated from foods and human and animal faecal specimens.
Wang L et al. Journal of applied microbiology 2016 Oct
DETECTION / DIAGNOSIS
Assessing Pathogens for Natural versus Laboratory Origins Using Genomic Data and Machine Learning
Korves T, et al. bioRxiv, Oct 6, 2016.
Identification of bacterial pathogens from formalin-fixed paraffin-embedded tissues by using 16S sequencing: Retrospective correlation of results to clinicians' responses.
Racsa Lori D et al. Human pathology 2016 Oct
Comparative genomic analysis of Haemophilus haemolyticus and non-typeable Haemophilus influenzae and a new testing scheme for their discrimination.
Hu Fang et al. Journal of clinical microbiology 2016 Oct
Rapid diagnostic test and use of antibiotic against methicillin-resistant Staphylococcus aureus in adult intensive care unit.
Dureau A-F et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2016 Oct
Use of a Molecular Panel to Aid in the Diagnosis of Culture-Negative Meningitis.
Dien Bard Jennifer et al. Journal of clinical microbiology 2016 Sep
Clinical Utility of On-Demand Multiplex Respiratory Pathogen Testing among Adult Outpatients.
Green Daniel A et al. Journal of clinical microbiology 2016 Sep
Molecular Detection of Tick-Borne Pathogens in Humans with Tick Bites and Erythema Migrans, in the Netherlands.
Jahfari Setareh et al. PLoS neglected tropical diseases 2016 Oct (10) e0005042
Evaluation of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry for identification of Mycobacterium abscessus subspecies according to whole genome sequencing.
Luo Liulin et al. Journal of clinical microbiology 2016 Sep
Urgent implementation in a hospital setting of a strategy to rule out secondary cases caused by imported XDR tuberculosis at diagnosis.
Pérez-Lago Laura et al. Journal of clinical microbiology 2016 Sep
Development and evaluation of a molecular diagnostic method to rapidly detect Histoplasma capsulatum var. farciminosum, the causative agent of epizootic lymphangitis, in equine clinical samples.
Scantlebury C E et al. Journal of clinical microbiology 2016 Oct
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
Use of whole-genome sequencing in the epidemiology of Campylobacter jejuni infections: state-of-knowledge
Llarena AK, Rossi M. bioRxiv, Oct 1, 2016.
Transmission of methicillin-resistant Staphylococcus aureus in long-term care facilities and their related healthcare networks.
Harrison Ewan M et al. Genome medicine 2016 Oct (1) 102
VIRO-TypeNed, systematic molecular surveillance of enteroviruses in the Netherlands between 2010 and 2014.
Benschop Kimberley S M et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2016 Sep (39)
HCV dispersal patterns among intravenous drug users (IDUs) in Athens metropolitan area.
Papachristou Eleni et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2016 Oct
ANTIMICROBIALS / VACCINES / INTERVENTIONS
Rapid development of a DNA vaccine for Zika virus.
Dowd Kimberly A et al. Science (New York, N.Y.) 2016 Sep
Exome and genome sequencing for inborn errors of immunity.
Meyts Isabelle et al. The Journal of allergy and clinical immunology 2016 Oct (4) 957-969
Large Variations in HIV-1 Viral Load Explained by Shifting-Mosaic Metapopulation Dynamics.
Lythgoe Katrina A et al. PLoS biology 2016 Oct (10) e1002567
Integrated multi-omics of the human gut microbiome in a case study of familial type 1 diabetes.
Heintz-Buschart Anna et al. Nature microbiology 2016 Oct 16180
Health Disparities and the Microbiome.
Findley Keisha et al. Trends in microbiology 2016 Sep
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