Advanced Molecular Detection Clips Content (Published on 10/20/2022)
NEWS
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In new White House plan, Biden administration outlines ambitious strategy to prevent and prepare for pandemics
Joseph A. STAT, Oct 18, 2022. -
Real-Time Surveillance Sequencing Shows Promise for Hospital Outbreak Detection, Prevention
Zhang H. GenomeWeb, Oct 18, 2022. -
Omicron boosters could arm you against variants that don’t yet exist
Reardon S. Nature, Oct 14, 2022. -
Boston University researchers’ testing of lab-made version of Covid virus draws government scrutiny
Branswell H. STAT, Oct 17, 2022. -
Biden Covid officials scramble to plan for Omicron subvariant threat
Cancryn A, Banco E. Politico, Oct 17, 2022. -
Universal flu vaccine protects against influenza A and B
Feranmi F. Lancet Microbe, Oct 14, 2022. -
Ancient DNA reveals rapid natural selection during the Black Death
Enard D. Nature, Oct 19, 2022. -
How the ‘Black Death’ Left Its Genetic Mark on Future Generations
Zimmer C. New York Times, Oct 19, 2022.
POLICY
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National Biodefense Strategy and Implementation Plan
White House, Oct 2022. -
COVID-19 Genomics UK (COG-UK) Consortium: Final Report.
Marjanovic Sonja et al. Rand health quarterly 2022 10 (4) 24
CONCEPTS / COMMENTS
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Metagenomic Pathogen Sequencing in Resource-Scarce Settings: Lessons Learned and the Road Ahead.
Yek Christina et al. Frontiers in epidemiology 2022 10 -
'Disease X'-time to act now and prepare for the next pandemic threat.
Mipatrini Daniele et al. European journal of public health 2022 10 -
The effects of the COVID-19 pandemic on community respiratory virus activity.
Chow Eric J et al. Nature reviews. Microbiology 2022 10
METHODS / TOOLS
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A low-cost genomics workflow enables isolate screening and strain-level analyses within microbiomes.
Sanders Jon G et al. Genome biology 2022 10 (1) 212 -
Cov2clusters: genomic clustering of SARS-CoV-2 sequences.
Sobkowiak Benjamin et al. BMC genomics 2022 10 (1) 710 -
New rules for genomics-informed COVID-19 responses–Lessons learned from the first waves of the Omicron variant in Australia
Porter AF, et al. PLoS Genet, Oct 13, 2022. -
A deep learning approach to real-time HIV outbreak detection using genetic data.
Kupperman Michael D et al. PLoS computational biology 2022 10 (10) e1010598
EVOLUTION / ECOLOGY / POPULATIONS
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Combining deep sequencing and conventional molecular approaches reveals broad diversity and distribution of fleas and Bartonella in rodents and shrews from Arctic and Subarctic ecosystems.
Buhler Kayla J et al. Parasites & vectors 2022 10 (1) 366 -
New Genetic Variants of Leptospira spp Characterized by MLST from Peruvian Isolates.
Delgado M Angélica et al. Journal of tropical medicine 2022 10 4184326 -
The rate and role of pseudogenes of the Mycobacterium tuberculosis complex.
Soler-Camargo Naila Cristina et al. Microbial genomics 2022 10 (10) -
Molecular characterization of a new SARS-CoV-2 recombinant cluster XAG identified in Brazil.
Silva Thaís de Souza et al. Frontiers in medicine 2022 10 1008600 -
The First Molecular Detection of Aedes albopictus in Sudan Associates with Increased Outbreaks of Chikungunya and Dengue.
Ahmed Ayman et al. International journal of molecular sciences 2022 10 (19)
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Sequence-based identification of metronidazole-resistant Clostridioides difficile isolates
Smits WK, et al. Emerg Infect Dis, Nov 2022. -
Polyclonal dissemination of OXA-232 carbapenemase–producing Klebsiella pneumoniae, France, 2013–2021.
Emeraud C, et al. Emerg Infect Dis, Nov 2022. -
Role of spike in the pathogenic and antigenic behavior of SARS-CoV-2 BA.1
Chen DY, et al. bioRxiv, Oct 14, 2022. -
Differences in SARS-CoV-2 clinical manifestations and disease severity in children and adolescents by the infecting variant
Quintero AM, et al. Emerg Infect Dis, Nov 2022.
DETECTION / DIAGNOSIS
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Single Nucleotide Polymorphism-Based Real-Time PCR Screening Assay for Rapid Tracking of Bacterial Infection Clusters To Complement Whole-Genome Sequencing Efforts during Outbreak Investigations.
Treffon Janina et al. Microbiology spectrum 2022 10 e0303622 -
Establishment of SARS-CoV-2 genomic surveillance within the Military Health System during 1 March-31 December 2020.
Morton Lindsay et al. MSMR 2022 10 (7) 11-18 -
Genetic diversity and evolutionary convergence of cryptic SARS- CoV-2 lineages detected via wastewater sequencing.
Devon A Gregory et al. PLoS Pathog 2022 10 (10) e1010636 -
SARS-CoV-2 infection dynamics revealed by wastewater sequencing analysis and deconvolution.
Schumann Vic-Fabienne et al. The Science of the total environment 2022 10 158931 -
Sustained detection of type 2 poliovirus in London sewage between February and July, 2022, by enhanced environmental surveillance.
Klapsa Dimitra et al. Lancet (London, England) 2022 10 -
Discovery and validation of circulating miRNAs for the clinical prognosis of severe dengue.
Limothai Umaporn et al. PLoS neglected tropical diseases 2022 10 (10) e0010836 -
Air and surface sampling for monkeypox virus in a UK hospital: an observational study.
Gould Susan et al. The Lancet. Microbe 2022 10 -
Evaluation of the Performance of a Multiplex Real-Time PCR Assay for the Identification of Aspergillus, Cryptococcus neoformans, and Pneumocystis jirovecii Simultaneously from Sputum in Multicenter
Liu W, et al. Infect Drug Resist, Oct 18, 2022. -
Using next generation sequencing for molecular detection and differentiation of Anaplasma phagocytophilum variants from host seeking Ixodes scapularis ticks in the United States.
Hojgaard Andrias et al. Ticks and tick-borne diseases 2022 10 (6) 102041
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Epidemiological analysis of Legionnaires' disease in Scotland: a genomic study.
Gorzynski Jamie et al. The Lancet. Microbe 2022 10 -
Spatial-temporal and phylogenetic analyses of epidemiologic data to help understand the modes of transmission of endemic typhoid fever in Samoa.
Sikorski Michael J et al. PLoS neglected tropical diseases 2022 10 (10) e0010348 -
Linking contact tracing with genomic surveillance to deconvolute SARS-CoV-2 transmission on a university campus.
Turcinovic Jacquelyn et al. iScience 2022 10 105337 -
Getting to the Heart of In-hospital Transmission of SARS-CoV-2 with the Help of Whole Genome Sequencing.
Asad H et al. The Journal of hospital infection 2022 10 -
Prioritizing interventions for preventing COVID-19 outbreaks in military basic training.
España Guido et al. PLoS computational biology 2022 10 (10) e1010489 -
Cluster of norovirus genogroup IX outbreaks in long-term care facilities, Utah, USA, 2021
Osborn B, et al. Emerg Infect Dis, Nov 2022.
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Genome-wide CRISPR screens identify combinations of candidate latency reversing agents for targeting the latent HIV-1 reservoir
Dai W, et al. Sci Transl Med, Oct 19, 2022.
HOST-MICROBE INTERACTIONS
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Evolution of immune genes is associated with the Black Death
Klunk J, et al. Nature, Oct 19, 2022. -
Genetically predicted high IGF-1 levels showed protective effects on COVID-19 susceptibility and hospitalization: a Mendelian randomisation study with data from 60 studies across 25 countries.
Li Xinxuan et al. eLife 2022 10 -
Genetic variants determine intrafamilial variability of SARS-CoV-2 clinical outcomes in 19 Italian families.
Azzarà Alessia et al. PloS one 2022 10 (10) e0275988 -
A common allele of HLA mediates asymptomatic SARS-CoV-2 infection
Augusto DG, et al. medRxiv, Oct 12, 2022. -
Human leukocyte antigen alleles associate with COVID-19 vaccine immunogenicity and risk of breakthrough infection.
Mentzer Alexander J et al. Nature medicine 2022 10 -
Association between breastfeeding, host genetic factors, and calicivirus gastroenteritis in a Nicaraguan birth cohort.
Vielot Nadja Alexandra et al. PloS one 2022 10 (10) e0267689
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Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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