Advanced Molecular Detection Clips Content (Published on 08/10/2017)
NEWS
-
CDC to invest millions in enhanced antibiotic resistance testing
Dall C. CIDRAP, Aug 4, 2017. -
Anthrax cousin wreaks havoc in the rainforest
Kupferschmidt K. Science, Aug 4, 2017. -
More colistin-resistance genes identified in Europe
Dall C. CIDRAP, Aug 3, 2017. -
MRSA DNA Sequencing Predicts Patient Survival
GenomeWeb, Aug 8, 2017. -
Shotgun Sequencing Outdone by Amplicon
Offord C. The Scientist, Aug 8, 2017. -
These Scientists Took Over a Computer by Encoding Malware in DNA
Yong E. Atlantic, Aug 10, 2017. -
Predicting TB's Behavior: Can new molecular tests beat standard lab cultures in predicting TB outcome?
Pesheva E. Harvard News, Aug 3, 2017. -
Persistent herpes virus infections associated with telomere length
Healio, Aug 2, 2017. -
Dengue Virus Spread in Asia Appears Aided By Airline Hubs
GenomeWeb, Aug 3, 2017. -
Rapid Malaria Tests Work, but With Unexpected Drawbacks
McNeil DG Jr, New York Times, Aug 7, 2017.
EVENTS / TRAINING / WEB RESOURCES
-
Pew to Launch Information-Sharing Platform to Spur Antibiotic Discovery
(news release) Pew Charitable Trusts, Aug 7, 2017.
CONCEPTS / COMMENTS
-
Plasmid-encoded colistin resistance: mcr-one, two, three and counting
(editorial) Kluytmans J. Euro Surveill, Aug 3, 2017. -
Plasma Epstein-Barr Virus DNA for Screening.
Ambinder Richard F et al. The New England journal of medicine 2017 Aug (6) 584-585
METHODS / TOOLS
-
Bioinformatic Analyses of Whole-Genome Sequence Data in a Public Health Laboratory
Oakeson KF, et al. Emerg Infect Dis, Sep 2017. -
Large-scale differences in microbial biodiversity discovery between 16S amplicon and shotgun sequencing.
Tessler Michael et al. Scientific reports 2017 Jul (1) 6589 -
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Bowers Robert M et al. Nature biotechnology 2017 Aug (8) 725-731 -
The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples.
Deck John et al. PLoS biology 2017 Aug (8) e2002925 -
Biased phylodynamic inferences from analysing clusters of viral sequences
Dearlove BL, et al. Virus Evol, Aug 3, 2017. -
Phylodynamic analysis to inform prevention efforts in mixed HIV epidemics.
Volz Erik M et al. Virus evolution 2017 Jul (2) vex014
EVOLUTION / ECOLOGY / POPULATIONS
-
Characterization of Legionella Species from Watersheds in British Columbia, Canada.
Peabody Michael A et al. mSphere (4) -
Complete Genome Sequence of Mycobacteriumchimaera Strain CDC2015-22-71.
Nabeeh A Hasan et al. Genome Announc 2017 8 (31) -
Processes Underlying Rabies Virus Incursions across US–Canada Border as Revealed by Whole-Genome Phylogeography
Trewby H, et al. Emerg Infect Dis, Sep 2017. -
Rare HIV-1 transmitted/founder lineages identified by deep viral sequencing contribute to rapid shifts in dominant quasispecies during acute and early infection.
Kijak Gustavo H et al. PLoS pathogens 2017 Jul (7) e1006510 -
Phylodynamics of Yellow Fever Virus in the Americas: new insights into the origin of the 2017 Brazilian outbreak.
Mir Daiana et al. Scientific reports 2017 Aug (1) 7385 -
EVIDENCE OF INCREASING DIVERSIFICATION OF ZIKA VIRUS STRAINS ISOLATED IN THE AMERICAN CONTINENT.
Aldunate Fabián et al. Journal of medical virology 2017 Aug -
Evolution and spread of Venezuelan equine encephalitis complex alphavirus in the Americas.
Forrester Naomi L et al. PLoS neglected tropical diseases 2017 Aug (8) e0005693 -
Increasing airline travel may facilitate co-circulation of multiple dengue virus serotypes in Asia.
Tian Huaiyu et al. PLoS neglected tropical diseases 2017 Aug (8) e0005694 -
Genome-wide diversity and differentiation in New World populations of the human malaria parasite Plasmodium vivax.
C de Oliveira Thais et al. PLoS neglected tropical diseases 2017 Jul (7) e0005824
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
-
Whole-Genome Sequencing of Human Clinical Klebsiella pneumoniae Isolates Reveals Misidentification and Misunderstandings of Klebsiella pneumoniae, Klebsiella variicola, and Klebsiella quasipneumoniae.
Long S Wesley et al. mSphere (4) -
Co-occurrence of three different resistance plasmids in a multi-drug resistant Cronobacter sakazakii isolate causing neonatal infections.
Shi Lining et al. Virulence 2017 Aug 0 -
Identification and characterization of a novel botulinum neurotoxin.
Zhang Sicai et al. Nature communications 2017 Aug 14130 -
Clonal differences in Staphylococcus aureus bacteraemia-associated mortality
Recker M, et al. Nat Microbiol, Aug 7, 2017. -
Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England.
Harrison Ewan M et al. Scientific reports 2017 Aug (1) 7406 -
Diversity, virulence, and antimicrobial resistance of the KPC-producing Klebsiella pneumoniae ST307 clone.
Villa Laura et al. Microbial genomics 2017 Apr (4) e000110 -
A population genomics approach to exploiting the accessory 'resistome' of Escherichia coli.
Goldstone Robert J et al. Microbial genomics 2017 Apr (4) e000108 -
Novel plasmid-mediated colistin resistance mcr-4 gene in Salmonella and Escherichia coli, Italy 2013, Spain and Belgium, 2015 to 2016
Carattoli A, et al. Euro Surveill, Aug 3, 2017. -
The invasome of Salmonella Dublin as revealed by whole genome sequencing.
Mohammed Manal et al. BMC infectious diseases 2017 Aug (1) 544 -
The high frequency of non-aspartic acid residues at HA222 in influenza A(H1N1) 2009 pandemic viruses is associated with mortality during the upsurge of 2015: a molecular and epidemiological study from central India.
Barde P V et al. Epidemiology and infection 2017 Aug 1-10 -
HIV drug resistance in African infants and young children newly diagnosed with HIV: a multicounty analysis
Jordan MR, et al. Clin Infect Dis, Aug 8, 2017. -
Mapping sulphadoxine-pyrimethamine-resistant Plasmodium falciparum malaria in infected humans and in parasite populations in Africa.
Okell Lucy C et al. Scientific reports 2017 Aug (1) 7389
DETECTION / DIAGNOSIS
-
Molecular Antimicrobial Resistance Surveillance for Neisseria gonorrhoeae, Northern Territory, Australia
Whiley DM, et al. Emerg Infect Dis, Sep 2017. -
Development and evaluation of a multiple-locus variable-number tandem-repeats analysis assay for subtyping Salmonella Typhi strains from sub-Saharan Africa.
Tau Nomsa P et al. Journal of medical microbiology 2017 Jul (7) 937-945 -
National Antimicrobial Resistance Monitoring System: Two Decades of Advancing Public Health Through Integrated Surveillance of Antimicrobial Resistance.
Karp Beth E et al. Foodborne pathogens and disease 2017 Aug -
Comparison of methods available for the identification of Mycobacterium chimaera.
Lecorche Emmanuel et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2017 Aug -
Retrospective use of next-generation sequencing reveals the presence of Enteroviruses in acute influenza-like illness respiratory samples collected in South/South-East Asia during 2010-2013.
Rutvisuttinunt Wiriya et al. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology 2017 Jul 91-99 -
The HIV Genomic Incidence Assay Meets False Recency Rate and Mean Duration of Recency Infection Performance Standards.
Park Sung Yong et al. Scientific reports 2017 Aug (1) 7480 -
Collaborative update of a rule-based expert system for HIV-1 genotypic resistance test interpretation.
Paredes Roger et al. PloS one 2017 (7) e0181357
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
-
Whole-genome sequencing of Campylobacter jejuni isolated from Danish routine human stool samples reveals surprising degree of clustering.
Joensen K G et al. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2017 Aug -
Duodenoscope-Related Outbreak of a Carbapenem-Resistant Klebsiella pneumoniae Identified Using Advanced Molecular Diagnostics
Humphries RM, et al. Clin Infect Dis, Aug 8, 2017. -
Solid Organ Transplant-Transmitted Tuberculosis Linked to a Community Outbreak - California, 2015.
Kay Alexander et al. MMWR. Morbidity and mortality weekly report 2017 Aug (30) 801-805 -
Ongoing hepatitis A among men who have sex with men (MSM) linked to outbreaks in Europe in Tel Aviv area, Israel, December 2016 - June 2017.
Gozlan Yael et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2017 Jul (29) -
Genetic transmission networks reveal the transmission patterns of HIV-1 CRF01_AE in China.
Li Xiaoshan et al. Sexually transmitted infections 2017 Aug -
Hematophagous Ectoparasites of Cliff Swallows Invade a Hospital and Feed on Humans
Beatty NL, et al. Clin Infect Dis, Aug 8, 2017.
HOST-MICROBE INTERACTIONS
-
Human genome-microbiome interaction: metagenomics frontiers for the aetiopathology of autoimmune diseases.
Gundogdu Aycan et al. Microbial genomics 2017 Apr (4) e000112 -
A clinician's guide to microbiome analysis.
Claesson Marcus J et al. Nature reviews. Gastroenterology & hepatology 2017 Aug -
Impact of intrapartum antimicrobial prophylaxis upon the intestinal microbiota and the prevalence of antibiotic resistance genes in vaginally delivered full-term neonates.
Nogacka Alicja et al. Microbiome 2017 Aug (1) 93 -
Analysis of Plasma Epstein-Barr Virus DNA to Screen for Nasopharyngeal Cancer.
Chan K C Allen et al. The New England journal of medicine 2017 Aug (6) 513-522 -
Genome-wide analysis of eighteen Epstein-Barr viruses isolated from primary nasopharyngeal carcinoma biopsies.
Tu Chaofeng et al. Journal of virology 2017 Jun -
Deep sequencing of RSV from an adult challenge study and from naturally infected infants reveals heterogeneous diversification dynamics.
Lau Jessica W et al. Virology 2017 Aug 289-296 -
Persistent infections in immunocompromised hosts are rarely sources of new pathogen variants.
Eden John-Sebastian et al. Virus evolution 2017 Jul (2) vex018 -
Protective Effect of Val129-PrP against Bovine Spongiform Encephalopathy but not Variant Creutzfeldt-Jakob Disease
Fernandez-Borges N, et al. Emerg Infect Dis, Sep 2017.


Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Jan 16, 2025