Advanced Molecular Detection Clips Content (Published on 08/16/2018)
NEWS
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Pathogen Response-Related Variants Tapped for Broader Disease Insights
GenomeWeb, Aug 9, 2018. -
Mutant mosquitoes: Can gene editing kill off malaria?
Fletcher M. The Telegraph, Aug 11, 2018.
CONCEPTS / COMMENTS
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Bat pathogens hit the road: But which one?
Joffrin Léa et al. PLoS pathogens 2018 Aug (8) e1007134 -
The spectre of smallpox lingers
(editorial) Nature, Aug 13, 2018. -
Causality in dietary interventions—building a case for gut microbiota
Lam YY, et al. Genome Med, Aug 1, 2018. -
Microbiome: Focus on Causation and Mechanism.
Fischbach Michael A et al. Cell 2018 Aug (4) 785-790
METHODS / TOOLS
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GrapeTree: Visualization of core genomic relationships among 100,000 bacterial pathogens.
Zhou Zhemin et al. Genome research 2018 Jul -
Large-Scale Simulations of Bacterial Populations Over Complex Networks.
Teixeira Andreia Sofia et al. Journal of computational biology : a journal of computational molecular cell biology 2018 Aug (8) 850-861 -
Deep genome annotation of the opportunistic human pathogen Streptococcus pneumoniae D39.
Slager Jelle et al. Nucleic acids research 2018 Aug
EVOLUTION / ECOLOGY / POPULATIONS
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Population genomics of bacterial host adaptation.
Sheppard Samuel K et al. Nature reviews. Genetics 2018 Jul -
Emergence of Localized Serogroup W Meningococcal Disease in the United States - Georgia, 2006-2016.
Moore Ashley E et al. MMWR. Morbidity and mortality weekly report 2018 Aug (32) 894-897 -
Genomic exploration of sequential clinical isolates reveals a distinctive molecular signature of persistent Staphylococcus aureus bacteraemia.
Giulieri Stefano G et al. Genome medicine 2018 Aug (1) 65 -
Phylogenetic and antimicrobial resistance gene analysis of Salmonella Typhimurium strains isolated in Brazil by whole genome sequencing.
Almeida Fernanda et al. PloS one 2018 (8) e0201882 -
Characterization of intra- and inter-host norovirus P2 genetic variability in linked individuals by amplicon sequencing.
Sabrià Aurora et al. PloS one 2018 (8) e0201850 -
Deep mutational scanning of hemagglutinin helps predict evolutionary fates of human H3N2 influenza variants.
Lee Juhye M et al. Proceedings of the National Academy of Sciences of the United States of America 2018 Aug -
Ticks infesting dogs in rural communities of Yucatan, Mexico and molecular diagnosis of rickettsial infection.
Ojeda-Chi M M et al. Transboundary and emerging diseases 2018 Aug
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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A Major Mycobacterium tuberculosis outbreak caused by one specific genotype in a low-incidence country: Exploring gene profile virulence explanations.
Folkvardsen Dorte Bek et al. Scientific reports 2018 Aug (1) 11869 -
A systematic review of hepatitis B virus (HBV) drug and vaccine escape mutations in Africa: A call for urgent action.
Mokaya Jolynne et al. PLoS neglected tropical diseases 2018 Aug (8) e0006629
DETECTION / DIAGNOSIS
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European external quality assessments for identification, molecular typing and characterization of Staphylococcus aureus.
Deplano Ariane et al. The Journal of antimicrobial chemotherapy 2018 Aug -
Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data.
Sobkowiak Benjamin et al. BMC genomics 2018 Aug (1) 613 -
Detection of Chlamydia trachomatis mRNA using digital PCR as a more accurate marker of viable organism.
Phillips Samuel et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2018 Aug -
Precision surveillance for viral respiratory pathogens: virome capture sequencing for the detection and genomic characterization of severe acute respiratory infection in Uganda
Cummings MJ, et al. Clin Infect Dis, Aug 7, 2018. -
Spatio-temporal Virus Surveillance for Severe Acute Respiratory Infections in Resource-limited Settings: How Deep Need We Go?
Hirsch HH. Clin Infect Dis, Aug 7, 2018. -
Amplification and next generation sequencing of near full-length human enteroviruses for identification and characterisation from clinical samples.
Isaacs Sonia R et al. Scientific reports 2018 Aug (1) 11889 -
High Number of Potential Transmitters Revealed in a Population-based Systematic Hepatitis C Virus RNA Screening Among Human Immunodeficiency Virus-infected Men Who Have Sex With Men.
Braun Dominique L et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Aug
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Outbreaks of Serratia marcescens and Serratia rubidaea bacteremia in a central Kathmandu hospital following the 2015 earthquakes.
Karkey Abhilasha et al. Transactions of the Royal Society of Tropical Medicine and Hygiene 2018 Aug -
Massive Iatrogenic Outbreak of Human Immunodeficiency Virus Type 1 in Rural Cambodia, 2014-2015.
Rouet François et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 May (11) 1733-1741 -
Precision surveillance for viral respiratory pathogens: virome capture sequencing for the detection and genomic characterization of severe acute respiratory infection in Uganda.
Cummings Matthew J et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Aug
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Progress on Norovirus vaccine research: Public health considerations and future directions.
Mattison Claire P et al. Expert review of vaccines 2018 Aug -
Effect of Antibiotic-Mediated Microbiome Modulation on Rotavirus Vaccine Immunogenicity: A Human, Randomized-Control Proof-of-Concept Trial.
Harris Vanessa C et al. Cell host & microbe 2018 Aug (2) 197-207.e4 -
High Cure Rates With Grazoprevir-Elbasvir With or Without Ribavirin Guided by Genotypic Resistance Testing Among Human Immunodeficiency Virus/Hepatitis C Virus-coinfected Men Who Have Sex With Men.
Braun Dominique L et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Aug -
The Proof Is in the Patient: Hepatitis C Virus Microelimination in the Swiss Human Immunodeficiency Virus Cohort Study.
Sulkowski Mark S et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Aug
HOST-MICROBE INTERACTIONS
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Complement receptor 1 (CR1, CD35) association with susceptibility to leprosy.
Kretzschmar Gabriela Canalli et al. PLoS neglected tropical diseases 2018 Aug (8) e0006705 -
Polymorphisms and haplotypes in the promoter of the TNF-α gene are associated with disease severity of severe fever with thrombocytopenia syndrome in Chinese Han population.
Xing Bo et al. PLoS neglected tropical diseases 2018 06 (6) e0006547 -
Identification of genetic variants associated with dengue or West Nile virus disease: a systematic review and meta-analysis.
Cahill Megan E et al. BMC infectious diseases 2018 Jun (1) 282
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Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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