Advanced Molecular Detection Clips Content (Published on 07/28/2022)
NEWS
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Melioidosis Locally Endemic in Areas of the Mississippi Gulf Coast after Burkholderia pseudomallei Isolated in Soil and Water and Linked to Two Cases – Mississippi, 2020 and 2022
Health Alert Network (HAN), CDC, Jul 27, 2022. -
Data-sharing initiative aims to help fight against antibiotic resistance
Dall C. CIDRAP, Jul 27, 2022. -
Could Genetics Be the Key to Never Getting the Coronavirus?
Wu KJ. Atlantic, Jul 25, 2022. -
How long is COVID infectious? What scientists know so far
Adam D. Nature, Jul 26, 2022. -
As Omicron rages on, scientists have no idea what comes next
Kupferschmidt K. Science, Jul 19, 2022. -
White House to launch effort to develop next generation of Covid vaccines
Herper M, Facher L. STAT, Jul 25, 2022. -
Can we really get better Covid vaccines? There are big hurdles, but some hope
Herper M. STAT, Jul 27, 2022. -
NIST Develops Genetic Material for Validating Monkeypox Tests
NIST News, Jul 27, 2022. -
New studies offer theory on cause of unusual hepatitis cases in kids
Branswell H. STAT, Jul 25, 2022. -
What to know about vaccine-derived polio after rare case found in New York
Kekatos M. ABC News, Jul 22, 2022. -
Herpes Simplex Virus History, Spread Uncovered in Ancient DNA Analysis
GenomeWeb, Jul 27, 2022.
EVENTS / TRAINING / WEB RESOURCES
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Making sense of genomic data: COVID-19 web-based bioinformatics
(virtual course) COG-Train, Jul 24-Aug 13, 2022.
CONCEPTS / COMMENTS
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Evolutionary insight into the emergence of SARS-CoV-2 variants of concern
Harari S, et al. Nat Med, Jul 8, 2022. -
Wastewater is a robust proxy for monitoring circulating SARS-CoV-2 variants.
et al. Nature biotechnology 2022 7 -
Operation Nasal Vaccine-Lightning speed to counter COVID-19.
Topol Eric J et al. Science immunology 2022 7 eadd9947 -
Vaccine Preventable Zoonotic Diseases: Challenges and Opportunities for Public Health Progress.
Carpenter Ann et al. Vaccines 2022 7 (7)
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Monkeypox virus: a neglected zoonotic pathogen spreads globally.
Alakunle Emmanuel F et al. Nature reviews. Microbiology 2022 7 -
Women in the European Virus Bioinformatics Center.
Hufsky Franziska et al. Viruses 2022 7 (7)
METHODS / TOOLS
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Sequencing of Enteric Bacteria: Library Preparation Procedure Matters for Accurate Identification and Characterization.
Poates Angela et al. Foodborne pathogens and disease 2022 7
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Using Evolutionary Analyses to Refine Whole-Genome Sequence Match Criteria.
Pightling Arthur W et al. Frontiers in microbiology 2022 7 797997 -
Portable sequencing of Mycobacterium tuberculosis for clinical and epidemiological applications.
Gómez-González Paula J et al. Briefings in bioinformatics 2022 7 -
All-in-One Optofluidic Chip for Molecular Biosensing Assays.
Sano Tyler et al. Biosensors 2022 7 (7) -
Using multiple sampling strategies to estimate SARS-CoV-2 epidemiological parameters from genomic sequencing data
Inward RP, et al. medRxiv, Jul 22, 2022. -
Nanopore Sequencing for Characterization of HIV-1 Recombinant Forms.
Mori Mikiko et al. Microbiology spectrum 2022 7 e0150722
EVOLUTION / ECOLOGY / POPULATIONS
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Genome characteristics of clinical Salmonella enterica population from a state public health laboratory, New Hampshire, USA, 2017-2020.
Turcotte Madison R et al. BMC genomics 2022 7 (1) 537
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Ancient Yersinia pestis and Salmonella enterica genomes from Bronze Age Crete
Neumann GU, et al. Current Biol, Jul 25, 2022. -
Pneumococcal genetic variability in age-dependent bacterial carriage.
Kremer Philip H C et al. eLife 2022 7 -
Bioinformatic Analysis of a Set of 14 Temperate Bacteriophages Isolated from Staphylococcus aureus Strains Highlights Their Massive Genetic Diversity.
Suárez Cristian A et al. Microbiology spectrum 2022 7 e0033422 -
Insight into Genetic Characteristics of Identified SARS-CoV-2 Variants in Egypt from March 2020 to May 2021.
Roshdy Wael H et al. Pathogens (Basel, Switzerland) 2022 7 (8) -
Genetic Analysis of HPIV3 That Emerged during the SARS-CoV-2 Pandemic in Gwangju, South Korea.
Lee Hongsu et al. Viruses 2022 7 (7) -
Replacement of the Alpha variant of SARS-CoV-2 by the Delta variant in Lebanon between April and June 2021
Merhi G, et al. Microb Genom. 2022 Jul;8(7). -
Full genome analysis of circulating DENV-2 in Senegal reveals a regional diversification into separate clades.
Dieng Idrissa et al. Journal of medical virology 2022 7 -
Early start of seasonal transmission and co-circulation of West Nile virus lineage 2 and a newly introduced lineage 1 strain, northern Italy, June 2022.
Barzon Luisa et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2022 7 (29) -
Recombinant Noroviruses Circulating in Spain from 2016 to 2020 and Proposal of Two Novel Genotypes within Genogroup I.
Navarro-Lleó Noemi et al. Microbiology spectrum 2022 7 e0250521 -
Evolution of the North American Lineage H7 Avian Influenza Viruses in Association with H7 Virus's Introduction to Poultry.
Youk Sungsu et al. Journal of virology 2022 7 (14) e0027822 -
A New Circular Single-Stranded DNA Virus Related with Howler Monkey Associated Porprismacovirus 1 Detected in Children with Acute Gastroenteritis.
Villanova Fabiola et al. Viruses 2022 7 (7) -
Chikungunya Virus Asian Lineage Infection in the Amazon Region Is Maintained by Asiatic and Caribbean-Introduced Variants.
de Oliveira Ribeiro Geovani et al. Viruses 2022 7 (7) -
Genomic Sequencing of Dengue Virus Strains Associated with Papua New Guinean Outbreaks in 2016 Reveals Endemic Circulation of DENV-1 and DENV-2.
Jonduo Marinjho et al. The American journal of tropical medicine and hygiene 2022 7 -
Molecular characterization of Giardia duodenalis and evidence for cross-species transmission in Northern Argentina.
Kuthyar Sahana et al. Transboundary and emerging diseases 2021 7 (4) 2209-2218
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Genomic diversity and genetic variation of Leishmania panamensis within its endemic range.
Llanes Alejandro et al. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases 2022 7 105342
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Population genomics of Group B Streptococcus reveals the genetics of neonatal disease onset and meningeal invasion.
Chaguza Chrispin et al. Nature communications 2022 7 (1) 4215 -
Differential Overlap in Human and Animal Fecal Microbiomes and Resistomes in Rural versus Urban Bangladesh.
Swarthout Jenna M et al. Applied and environmental microbiology 2022 7 e0075922 -
Systematic whole-genome sequencing reveals an unexpected diversity among actinomycetoma pathogens and provides insights into their antibacterial susceptibilities.
Watson Andrew Keith et al. PLoS neglected tropical diseases 2022 7 (7) e0010128 -
Dominant Carbapenemase-Encoding Plasmids in Clinical Enterobacterales Isolates and Hypervirulent Klebsiella pneumoniae, Singapore.
Yong Melvin et al. Emerging infectious diseases 2022 7 (8) 1578-1588 -
Different Clinical Presentations of Human Rhinovirus Species Infection in Children and Adults in Mexico.
Galindo-Fraga Arturo et al. Open forum infectious diseases 2022 7 (7) ofac303
DETECTION / DIAGNOSIS
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Culture-Free Phylogenetic Analysis of Legionella pneumophila Using Targeted CRISPR/Cas9 Next-Generation Sequencing.
Domazetovska Ana et al. Microbiology spectrum 2022 7 e0035922 -
Acinetobacter baumannii Genomic Sequence-Based Core Genome Multilocus Sequence Typing Using Ridom SeqSphere+ and Antimicrobial Susceptibility Prediction in ARESdb.
Fida Madiha et al. Journal of clinical microbiology 2022 7 e0053322 -
Subtyping Evaluation of Salmonella Enteritidis Using Single Nucleotide Polymorphism and Core Genome Multilocus Sequence Typing with Nanopore Reads.
Xian Zhihan et al. Applied and environmental microbiology 2022 7 e0078522 -
Direct Metagenomic Diagnosis of Community-Acquired Meningitis: State of the Art.
Morsli Madjid et al. Frontiers in microbiology 2022 7 926240
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Cryptogenic hepatitis patients have a higher Bartonella sp.-DNA detection in blood and skin samples than patients with non-viral hepatitis of known cause.
Drummond Marina Rovani et al. PLoS neglected tropical diseases 2022 7 (7) e0010603 -
Transition between Mycobacterium tuberculosis and nontuberculous mycobacteria in recurrent "tuberculosis" patients.
Li Qing et al. European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2022 7 -
Simultaneous Late, Late-Onset Group B Streptococcal Meningitis in Identical Twins.
Sherman Gilad et al. Clinical pediatrics 2022 7 99228221113630
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Tracking Emergence and Spread of SARS-CoV-2 Omicron Variant in Large and Small Communities by Wastewater Monitoring in Alberta, Canada
Hubert CJ, et al. Emerg Infect Dis, Jul 22, 2022. -
SARS-CoV-2 Testing of Aircraft Wastewater Shows That Mandatory Tests and Vaccination Pass before Boarding Did Not Prevent Massive Importation of Omicron Variant into Europe.
Le Targa Lorlane et al. Viruses 2022 7 (7) -
Performance of SARS-CoV-2 Antigens in a Multiplex Bead Assay for Integrated Serological Surveillance of Neglected Tropical and Other Diseases.
Gwyn Sarah et al. The American journal of tropical medicine and hygiene 2022 7
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Genomic characterisation reveals a dominant lineage of SARS-CoV-2 in Papua New Guinea.
Palou Theresa et al. Virus evolution 2022 7 (1) veac033 -
Sensitive detection of SARS-CoV-2 molecular markers in urban community sewersheds using automated viral RNA purification and digital droplet PCR.
West Nicholas W et al. The Science of the total environment 2022 7 157547 -
Genetic Surveillance of SARS-CoV-2 M Reveals High Sequence and Structural Conservation Prior to the Introduction of Protease Inhibitor Paxlovid.
Lee Jonathan T et al. mBio 2022 7 e0086922 -
Nucleocapsid Antigenemia Is a Marker of Acute SARS-CoV-2 Infection
Verkerke HP, et al. J Infect Dis. 2022 Jul 25;jiac225. -
Tracking Emergence and Spread of SARS-CoV-2 Omicron Variant in Large and Small Communities by Wastewater Monitoring in Alberta, Canada.
Hubert Casey R J et al. Emerging infectious diseases 2022 7 (9) -
Influenza Activity and Composition of the 2022-23 Influenza Vaccine - United States, 2021-22 Season.
Merced-Morales Angiezel et al. MMWR. Morbidity and mortality weekly report 2022 7 (29) 913-919
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Paediatric monkeypox patient with unknown source of infection, the Netherlands, June 2022.
Tutu van Furth A Marceline et al. Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2022 7 (29) -
Adeno-associated virus 2 infection in children with non-A-E hepatitis
Ho A, et al. medRxiv, Jul 19, 2022. -
Genomic investigations of acute hepatitis of unknown aetiology in children
(preprint) Morfopoulou S, et al. Univ College London, Jul 2022. -
Sensitive and Stable Molecular Detection of Dengue, Chikungunya, and Zika Viruses from Dried Blood Spots.
Cardona-Ospina Jaime Andrés et al. The American journal of tropical medicine and hygiene 2022 7 -
Case Report: Cambodian National Malaria Surveillance Program Detection of Plasmodium knowlesi.
Yek Christina et al. The American journal of tropical medicine and hygiene 2022 7 (1) 151-153
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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First Description of a Yersinia pseudotuberculosis Clonal Outbreak in France, Confirmed Using a New Core Genome Multilocus Sequence Typing Method.
Savin Cyril et al. Microbiology spectrum 2022 7 e0114522
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Interhospital transmission of vancomycin-resistant Enterococcus faecium in Aomori, Japan.
Saito Norihiro et al. Antimicrobial resistance and infection control 2022 7 (1) 99 -
Population-based sequencing of Mycobacterium tuberculosis reveals how current population dynamics are shaped by past epidemics.
Cancino-Muñoz Irving et al. eLife 2022 7 -
Epidemiologic Investigation of Two Welder's Anthrax Cases Caused by Bacillus Cereus Group Bacteria: Occupational Link Established by Environmental Detection.
Dawson Patrick et al. Pathogens (Basel, Switzerland) 2022 7 (8)
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Comparative Dynamics of Delta and Omicron SARS-CoV-2 Variants across and between California and Mexico.
Mehta Sanjay R et al. Viruses 2022 7 (7) -
A large outbreak of COVID-19 in a UK prison, October 2020 to April 2021.
Adamson James P et al. Epidemiology and infection 2022 5 e134
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The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2
Pekar JE, et al. Science, Jul 26, 2022. -
The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic
Worobey M, et al. Science, Jul 26, 2022. -
Genomic epidemiology and phylodynamics for county-to-county transmission of SARS-CoV-2 in Minnesota, from 19A to Omicron
Scotch M, et al. medRxiv, Jul 25, 2022. -
An Outbreak of Severe Neonatal Pneumonia Caused by Human Respiratory Syncytial Virus BA9 in a Postpartum Care Centre in Shenyang, China.
Wang Bing et al. Microbiology spectrum 2022 7 e0097422 -
A 2019 Outbreak Investigation of Hepatitis A Virus Infections in the United States Linked to Imported Fresh Blackberries.
McClure Monica et al. Food and environmental virology 2022 7
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Untangling an AGS Outbreak Caused by the Recombinant GII.12[P16] Norovirus With Nanopore Sequencing.
Xiong Qianling et al. Frontiers in cellular and infection microbiology 2022 7 911563 -
Genotype Uniformity, Wild Bird-to-Poultry Transmissions, and Farm-to-Farm Carryover during the Spread of the Highly Pathogenic Avian Influenza H5N8 in the Czech Republic in 2021.
Nagy Alexander et al. Viruses 2022 7 (7) -
Transfusion-Transmitted Cache Valley Virus Infection in a Kidney Transplant Recipient with Meningoencephalitis.
Al-Heeti Omar et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2022 7
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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SARS-CoV-2 mRNA vaccination elicits robust antibody responses in children.
Bartsch Yannic C et al. Science translational medicine 2022 7 eabn9237 -
Differential neutralization and inhibition of SARS-CoV-2 variants by antibodies elicited by COVID-19 mRNA vaccines.
Wang Li et al. Nature communications 2022 7 (1) 4350
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COVID-19 Outbreak and BNT162b2 mRNA Vaccination Coverage in a Correctional Facility during Circulation of the SARS-CoV-2 Omicron BA.1 Variant in Italy.
Stufano Angela et al. Vaccines 2022 7 (7)
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The Potential Clinical Impact of Implementing Different COVID-19 Boosters in Fall 2022 in the United States
Kohli MA, et al. medRxiv, Jul 22, 2022.
HOST-MICROBE INTERACTIONS
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Exome-wide association study to identify rare variants influencing COVID-19 outcomes: Results from the Host Genetics Initiative
Butler-Laporte G, et al. medRxiv, Jul 20, 2022. -
Drivers of adaptive evolution during chronic SARS-CoV-2 infections.
Harari Sheri et al. Nature medicine 2022 6 (7) 1501-1508 -
Bidirectional genome-wide CRISPR screens reveal host factors regulating SARS-CoV-2, MERS-CoV and seasonal HCoVs.
Rebendenne Antoine et al. Nature genetics 2022 7 -
Genome-wide bidirectional CRISPR screens identify mucins as host factors modulating SARS-CoV-2 infection.
Biering Scott B et al. Nature genetics 2022 7 -
Interferon resistance of emerging SARS-CoV-2 variants.
Guo Kejun et al. Proceedings of the National Academy of Sciences of the United States of America 2022 7 (32) e2203760119 -
Detailed stratified GWAS analysis for severe COVID-19 in four European populations.
Degenhardt Frauke et al. Human molecular genetics 2022 7 -
Association between COVID-19 and telomere length: a bidirectional Mendelian randomization study.
Huang Danqi et al. Journal of medical virology 2022 7 -
Gut Microbiome Changes Occurring with Norovirus Infection and Recovery in Infants Enrolled in a Longitudinal Birth Cohort in Leon, Nicaragua.
Cannon Jennifer L et al. Viruses 2022 7 (7)
indicates that at least one CDC-affiliated author; indicates that the article addresses aspects of implementation or evaluation in clinical or public health practice. Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by the CDC Office of Genomics and Precision Public Health to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2023
- Page last updated:Sep 21, 2023
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