Advanced Molecular Detection Clips Content (Published on 07/05/2018)
NEWS
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Tightly Controllable Cas9 Genome Editor Could be Useful for Gene Drive Regulation
GenomeWeb, Jul 5, 2018. -
Alarming polio outbreak spreads in Congo, threatening global eradication efforts
Roberts L. Science, Jul 2, 2018. -
Sepsis is the third leading cause of death. Can a new blood test change that?
Weintraub K. STAT, Jul 3, 2018. -
Johns Hopkins Developing POC HCV Test For Clinics to Combat Patient Dropouts
GenomeWeb, Jul 5, 2018. -
HPV test is better than Pap smear at detecting precancerous cervical changes, study says
McGinley L. Washington Post, Jul 3, 2018. -
Gigantic study of Chinese babies yields slew of health data
Cyranoski D. Nature, Jul 2, 2018. -
A stubborn medical mystery: Was pandemic flu vaccine tied to an increase in narcolepsy cases?
Branswell H. STAT, Jul 5, 2018. -
35,000 papers may need to be retracted for image doctoring, says new paper
McCook A. Retraction Watch, Jun 29, 2018.
CONCEPTS / COMMENTS
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Commentary: Lowering the barriers to routine whole genome sequencing of bacteria in the clinical microbiology laboratory.
Rhoads Daniel D et al. Journal of clinical microbiology 2018 Jun -
Analysis and Correction of Inappropriate Image Duplication: The Molecular and Cellular Biology Experience
Bik E, et al. bioRxiv, Jun 24, 2018. -
Surveying what's flushed away.
Iraola Gregorio et al. Nature reviews. Microbiology 2018 Jun -
Taking flight with Precision Global Health: a scoping review on avian influenza
Bempong NE, et al. J Public Health Emerg, Jun 2018. -
Extreme Flu? Weird Encephalitis? It May Be Your Genes
Wallis C. Scientific American, Jul 3, 2018.
METHODS / TOOLS
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Novo&Stitch: accurate reconciliation of genome assemblies via optical maps.
Pan Weihua et al. Bioinformatics (Oxford, England) 2018 Jul (13) i43-i51 -
Viability of Candida auris and other Candida species after various MALDI-TOF extraction protocols.
Sterkel Alana et al. Journal of clinical microbiology 2018 Jun -
Removing contaminants from databases of draft genomes.
Lu Jennifer et al. PLoS computational biology 2018 Jun (6) e1006277 -
HmmUFOtu: An HMM and phylogenetic placement based ultra-fast taxonomic assignment and OTU picking tool for microbiome amplicon sequencing studies.
Zheng Qi et al. Genome biology 2018 Jun (1) 82 -
MicroPheno: predicting environments and host phenotypes from 16S rRNA gene sequencing using a k-mer based representation of shallow sub-samples.
Asgari Ehsaneddin et al. Bioinformatics (Oxford, England) 2018 Jul (13) i32-i42 -
Adventitious viruses persistently infect three commonly used mosquito cell lines.
Weger-Lucarelli James et al. Virology 2018 Jun 175-180 -
Characterization of 108 Genomic DNA Reference Materials for 11 Human Leukocyte Antigen (HLA) Loci: A GeT-RM Collaborative Project.
Bettinotti Maria P et al. The Journal of molecular diagnostics : JMD 2018 Jun -
Culturing the human microbiota and culturomics.
Lagier Jean-Christophe et al. Nature reviews. Microbiology 2018 05
EVOLUTION / ECOLOGY / POPULATIONS
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Genetic diversity and spatial-temporal distribution of Yersinia pestis in Qinghai Plateau, China.
Xu Xiaoqing et al. PLoS neglected tropical diseases 2018 Jun (6) e0006579 -
Population structure of invasive Neisseria meningitidis in the United States, 2011-15.
Potts Caelin C et al. The Journal of infection 2018 Jun -
Prevalence and genetic analysis of mcr-3 -positive Aeromonas species from humans, retail meat, and environmental water samples.
Shen Yingbo et al. Antimicrobial agents and chemotherapy 2018 Jul -
Domestic animals infected with Mycobacterium ulcerans-Implications for transmission to humans.
Djouaka Rousseau et al. PLoS neglected tropical diseases 2018 Jul (7) e0006572 -
Genomic surveillance of avian-origin influenza A viruses causing human disease.
Lam Tommy T et al. Genome medicine 2018 Jun (1) 50 -
Genomic analysis of a pre-elimination Malaysian Plasmodium vivax population reveals selective pressures and changing transmission dynamics.
Auburn Sarah et al. Nature communications 2018 Jul (1) 2585 -
Human impact on the diversity and virulence of the ubiquitous zoonotic parasite Toxoplasma gondii .
Shwab E Keats et al. Proceedings of the National Academy of Sciences of the United States of America 2018 Jul
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Occurrence and persistence of carbapenemases genes in hospital and wastewater treatment plants and propagation in the receiving river.
Proia Lorenzo et al. Journal of hazardous materials 2018 Jun 33-43 -
The relative invasive disease potential of Streptococcus pneumoniae among children after PCV introduction: a systematic review and meta-analysis.
Balsells Evelyn et al. The Journal of infection 2018 Jun -
Heterogeneous and Flexible Transmission of mcr-1 in Hospital-Associated Escherichia coli.
Shen Yingbo et al. mBio 2018 Jul (4) -
Analysis of Drug Resistance Mutations in Whole Blood DNA from HIV-1 Infected Patients by Single Genome and Ultradeep Sequencing Analysis.
Sotillo Alma et al. Journal of virological methods 2018 Jun
DETECTION / DIAGNOSIS
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Mismatch Amplification Mutation Assay (MAMA)-Based Real-Time PCR for Rapid Detection of Neisseria gonorrhoeae and Antimicrobial Resistance Determinants in Clinical Specimens.
Donà Valentina et al. Journal of clinical microbiology 2018 Jun -
Molecular screening for Neisseria gonorrhoeae antimicrobial resistance markers in Nigerian men who have sex with men and transgender women.
Hardick Justin et al. International journal of STD & AIDS 2018 Jan 956462418780050 -
Whole-Cell MALDI-TOF MS Versus 16S rRNA Gene Analysis for Identification and Dereplication of Recurrent Bacterial Isolates.
Strejcek Michal et al. Frontiers in microbiology 2018 1294 -
Rapid confirmation of the Zaire Ebola Virus in the outbreak of the Equateur province in the Democratic Republic of Congo: implications for public health interventions.
Mbala Kingebeni Placide et al. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2018 Jun -
Potential overestimation of HIV-1 sub-subtype F1 circulation in Rio de Janeiro, Brazil.
Marques Bianca Cristina Leires et al. Memorias do Instituto Oswaldo Cruz 2018 Jun (8) e170483 -
Nanopore sequencing as a revolutionary diagnostic tool for porcine viral enteric disease complexes identifies porcine kobuvirus as an important enteric virus.
Theuns Sebastiaan et al. Scientific reports 2018 Jun (1) 9830 -
Initial performance evaluation of a spotted array Mobile Analysis Platform (MAP) for the detection of influenza A/B, RSV, and MERS coronavirus.
Hardick Justin et al. Diagnostic microbiology and infectious disease 2018 Jul (3) 245-247 -
Rapid detection of Candida auris based on Loop-mediated Isothermal Amplification (LAMP).
Yamamoto Mikachi et al. Journal of clinical microbiology 2018 Jun
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Transmission Dynamics of Hyper-Endemic Multi-Drug Resistant Klebsiella pneumoniae in a Southeast Asian Neonatal Unit: A Longitudinal Study With Whole Genome Sequencing.
Smit Pieter W et al. Frontiers in microbiology 2018 1197 -
Mycobacterium bovis Persistence in two Different Captive Wild Animal Populations in Germany: A Longitudinal Molecular Epidemiological Study Revealing Pathogen Transmission by Whole Genome Sequencing.
Kohl Thomas A et al. Journal of clinical microbiology 2018 Jun -
Spatial Patterns of Extensively drug-resistant Tuberculosis (XDR-tuberculosis) transmission in KwaZulu-Natal, South Africa.
Nelson Kristin N et al. The Journal of infectious diseases 2018 Jun -
Phylogenetic analyses of local HIV transmission.
Sullivan Patrick S et al. The lancet. HIV 2018 Jun (6) e270-e271 -
Non-disclosed men who have sex with men in UK HIV transmission networks: phylogenetic analysis of surveillance data.
Ragonnet-Cronin Manon et al. The lancet. HIV 2018 Jun (6) e309-e316 -
HIV-2 infection in a migrant from Gambia: the history of the disease combined with phylogenetic analysis revealed the real source of infection.
Cella Eleonora et al. AIDS research and human retroviruses 2018 Jun -
Molecular evolution methods to study HIV-1 epidemics.
Patiño-Galindo Juan Á et al. Future virology 2018 May (6) 399-404 -
Molecular detection of Leishmania infantum DNA and host blood meal identification in Phlebotomus in a hypoendemic focus of human leishmaniasis in northern Algeria.
Bennai Kahina et al. PLoS neglected tropical diseases 2018 Jun (6) e0006513
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Generation of a broadly reactive influenza H1 antigen using a consensus HA sequence.
Ping Xianqiang et al. Vaccine 2018 Jun
HOST-MICROBE INTERACTIONS
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Molecular Aspects of Varicella-Zoster Virus Latency.
Depledge Daniel P et al. Viruses 2018 Jun (7) -
Effect of Screening With Primary Cervical HPV Testing vs Cytology Testing on High-grade Cervical Intraepithelial Neoplasia at 48 Months: The HPV FOCAL Randomized Clinical Trial.
Ogilvie Gina Suzanne et al. JAMA 2018 Jul (1) 43-52 -
Insights into myalgic encephalomyelitis/chronic fatigue syndrome phenotypes through comprehensive metabolomics.
Nagy-Szakal Dorottya et al. Scientific reports 2018 Jul (1) 10056
Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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