Advanced Molecular Detection Clips Content (Published on 06/27/2024)
NEWS
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Tracking pathogen evolution through climate change
Bote L, Maes M. Nat Rev Microbiol, May 16, 2024. -
Wild poliovirus spreads across Pakistan and Afghanistan: Wastewater detections suggest 2024 target of ending all wild virus transmission will be missed
Roberts L. Science, Jun 13, 2024/ -
Paper strip test can identify flu subtypes, may have other applications, scientists say
Van Beusekom M. CIDRAP, Jun 24, 2024. -
Three months into bird flu outbreak in U.S. dairy cows, experts see deep-rooted problems in response
Joseph A, et al. STAT, Jun 26, 2024. -
WHO, scientists call for urgent action on mpox strain
Rigby J. Reuters, Jun 25, 2024. -
Your gut microbes may influence how you handle stress
Stone W. NPR, Jun 24, 2024. -
Type 2 Diabetes Linked to Gut Microbiome Features in Strain-Specific Study
GenomeWeb, Jun 25, 2024.
EVENTS / TRAINING / WEB RESOURCES
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BV-BRC Viral Sub-species Classification Workshop at NIAID Rockville, MD, April 8-10, 2024
(summary and recordings) BV-BRC, accessed June 21, 2024.
CONCEPTS / COMMENTS
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Recent approaches in computational modelling for controlling pathogen threats.
John A Lees et al. Life Sci Alliance 2024 6 (9) -
Ongoing Cooperative Engagement Facilitates Agile Pandemic and Outbreak Response: Lessons Learned Through Cooperative Engagement Between Uganda and the United States.
Andrew W Bartlow et al. Health Secur 2024 2 (3) 223-234
METHODS / TOOLS
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Benchmarking short-, long- and hybrid-read assemblers for metagenome sequencing of complex microbial communities.
Gleb Goussarov et al. Microbiology (Reading) 2024 6 (6) -
Phylogenetic inference of inter-population transmission rates for infectious diseases.
Skylar A Gay et al. Brief Bioinform 2024 6 (4) -
Enhancing antimicrobial resistance detection with MetaGeneMiner: Targeted gene extraction from metagenomes.
Chang Liu et al. Chin Med J (Engl) 2024 6 -
CMAPLE: efficient phylogenetic inference in the pandemic era.
Nhan Ly-Trong et al. Mol Biol Evol 2024 6 -
From SARS-CoV-2 to Global Preparedness: A Graphical Interface for Standardised High-Throughput Bioinformatics Analysis in Pandemic Scenarios and Surveillance of Drug Resistance.
Tomas Cumlin et al. Int J Mol Sci 2024 6 (12) -
Comparing full variation profile analysis with the conventional consensus method in SARS-CoV-2 phylogeny.
Regina Nóra Fiam et al. Brief Bioinform 2024 6 (4)
EVOLUTION / ECOLOGY / POPULATIONS
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Estimating geographical spread of Streptococcus pneumoniae within Israel using genomic data.
Hsueh-Chien Raymond Cheng et al. Microb Genom 2024 6 (6) -
Implementation of the WHO Tricycle protocol for surveillance of extended-spectrum β-lactamase producing Escherichia coli in humans, chickens, and the environment in Madagascar: a prospective genomic epidemiology study.
Milen Milenkov et al. Lancet Microbe 2024 6 -
A multicenter genomic epidemiological investigation in Brazil, Chile, and Mexico reveals the diversity and persistence of Salmonella populations in surface waters.
Zhao Chen et al. mBio 2024 6 e0077724 -
Detection of co-infection and recombination cases with Omicron and local Delta variants of SARS-CoV-2 in Vietnam.
Nguyen Thu Trang et al. Sci Rep 2024 6 (1) 14225 -
Accurate Recapitulation of Chikungunya Virus Complete Coding Sequence Phylogeny Using Variable Genome Regions for Genomic Surveillance.
Eduardo D Rodríguez-Aguilar et al. Viruses 2024 6 (6) -
Outbreaks of H5N1 High Pathogenicity Avian Influenza in South Africa in 2023 Were Caused by Two Distinct Sub-Genotypes of Clade 2.3.4.4b Viruses.
Celia Abolnik et al. Viruses 2024 6 (6) -
Complete genome sequences of six S19 poliovirus reference strains.
Christina J Castro et al. Microbiol Resour Announc 2024 6 e0008024
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Plasmid genomic epidemiology of carbapenem-hydrolysing class D β-lactamase (CDHL)-producing Enterobacterales in Canada, 2010-2021.
Nicole Lerminiaux et al. Microb Genom 2024 6 (6) -
Presence and Persistence of ESKAPEE Bacteria before and after Hospital Wastewater Treatment.
Miguel Galarde-López et al. Microorganisms 2024 6 (6) -
Genomic evolution of ST228 SCCmec-I MRSA 10 years after a major nosocomial outbreak.
Florian Mauffrey et al. J Clin Microbiol 2024 6 e0020324
DETECTION / DIAGNOSIS
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Acute Meningoencephalitis Associated with Borrelia miyamotoi, Minnesota, USA.
Jeffrey M Kubiak et al. Emerg Infect Dis 2024 6 (7) 1472-1474 -
Prediction by genetic MATS of 4CMenB vaccine strain coverage of invasive meningococcal serogroup B isolates circulating in Taiwan between 2003 and 2020.
Alessandro Muzzi et al. mSphere 2024 5 (6) e0022024 -
Metagenomic profiling of raw wastewater in Portugal highlights microbiota and resistome signatures of public health interest beyond the usual suspects.
Beatriz Ramos et al. Sci Total Environ 2024 6 174272 -
Using wastewater surveillance for mpox as a complement to traditional case-based reporting - Chicago, March-June 2023.
Dorothy Foulkes et al. Environ Int 2024 6 108749 -
Leveraging wastewater-based epidemiology to monitor the spread of neglected tropical diseases in African communities.
Benedict Ofori et al. Infect Dis (Lond) 2024 6 1-15 -
Updated Surveillance Metrics and History of the COVID-19 Pandemic (2020-2023) in Europe: Longitudinal Trend Analysis.
Alexander L Lundberg et al. JMIR Public Health Surveill 2024 4 e53551 -
Tracking the prevalence and emergence of SARS-CoV-2 variants of concern using a regional genomic surveillance program.
Ana Jung et al. Microbiol Spectr 2024 6 e0422523 -
CRISPR-Based Assays for Point-of-Need Detection and Subtyping of Influenza.
Yibin B Zhang et al. J Mol Diagn 2024 6 (7) 599-612 -
Direct whole-genome sequencing of HIV-1 for clinical drug-resistance analysis and public health surveillance.
Rosa C Coldbeck-Shackley et al. J Clin Virol 2024 6 105709
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Genotypic cluster analysis of Neisseria gonorrhoeae reveals a spectrum of sexual mixing including among HIV-serodiscordant men who have sex with men.
David Chromy et al. Infect Dis (Lond) 2024 6 1-10 -
Define SNP thresholds for delineation of tuberculosis transmissions using whole-genome sequencing.
Yu-Xin Xiao et al. Microbiol Spectr 2024 6 e0041824 -
Notes from the Field: Toxigenic Corynebacterium ulcerans in Humans and Household Pets - Utah and Colorado, 2022-2023.
Amanda R Metz et al. MMWR Morb Mortal Wkly Rep 2024 6 (23) 534-535 -
Group A Streptococcal Outbreak in a Geriatric Mental Health Unit.
Halima Dabaja Younis et al. Am J Infect Control 2024 6 -
Transmission Patterns of Co-Circulation of Omicron Sub-Lineages in Hong Kong SAR, China, a City with Rigorous Social Distancing Measures, in 2022.
Ning Chow et al. Viruses 2024 6 (6) -
The role of socio-economic disparities in the relative success and persistence of SARS-CoV-2 variants in New York City in early 2021.
Tetyana I Vasylyeva et al. PLoS Pathog 2024 6 (6) e1012288 -
Hepatitis A virus subtype IB outbreak among MSM in Hungary with a link to a frozen berry source.
Ágnes Dencs et al. Infect Genet Evol 2024 6 105622 -
Genomic Epidemiology of Large Blastomycosis Outbreak, Ontario, Canada, 2021.
Lisa R McTaggart et al. Emerg Infect Dis 2024 6 (7) 1487-1490 -
Update on Outbreak of Fungal Meningitis Among US Residents Who Received Epidural Anesthesia at Two Clinics in Matamoros, Mexico.
Dallas J Smith et al. Clin Infect Dis 2023 9 (6) 1554-1558 -
Strong isolation by distance and evidence of population microstructure reflect ongoing Plasmodium falciparum transmission in Zanzibar.
Sean V Connelly et al. Elife 2024 6
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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A pan-respiratory antiviral chemotype targeting a transient host multi-protein complex.
Maya Michon et al. Open Biol 2024 6 (6) 230363
HOST-MICROBE INTERACTIONS
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Strain-specific gut microbial signatures in type 2 diabetes identified in a cross-cohort analysis of 8,117 metagenomes.
Zhendong Mei et al. Nat Med 2024 6
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Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
- Page last reviewed:Feb 1, 2024
- Page last updated:Sep 5, 2024