Advanced Molecular Detection Clips Content (Published on 06/22/2023)
NEWS
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Global ‘pandemic treaty’: nations wrestle with how to fairly share virus data
Lenharo M. Nature, Jun 19, 2023. -
WHO launches global network to detect and prevent infectious disease threats
WHO, May 20, 2023. -
CDC Launches Training Program to Improve Dx Testing in Non-Laboratory Settings
Bonislawski A. 360dx, Jun 15, 2023. -
CDC Greatly Expands Number of Infectious Disease Targets for National Wastewater Surveillance
Johnson M. GenomeWeb, Jun 14, 2023. -
How sequencing, collaboration solved the Pseudomonas outbreak tied to eye drops
Dall C. CIDRAP, Jun 16, 2023. -
Polio endgame finish is in sight
Barrett A. Nature, Jun 14, 2023. -
Spread of enterovirus D68 linked to polio-like illness may have risen 50% over 10 years
Van Beusekom M. CIDRAP, Jun 21, 2023. -
How scientists are hacking the genetic code to give proteins new powers
Kwon D. Nature, Jun 20, 2023.
CONCEPTS / COMMENTS
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Advancing the central role of non-model biorepositories in predictive modeling of emerging pathogens.
Jocelyn P Colella et al. PLoS Pathog 2023 6 (6) e1011410 -
Vaccination is an integral strategy to combat antimicrobial resistance.
Liam P Mullins et al. PLoS Pathog 2023 6 (6) e1011379 -
Ten simple rules for organizations to support research data sharing.
Robin Champieux et al. PLoS Comput Biol 2023 6 (6) e1011136 -
Gratitude for Public Health: COVID-19 and Beyond.
Rochelle P Walensky et al. Public Health Rep 2023 4 (4) 565-566
METHODS / TOOLS
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ReporTree: a surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data.
Verónica Mixão et al. Genome Med 2023 6 (1) 43 -
Challenges Associated with Investigating Salmonella Enteritidis with Low Genomic Diversity in New York State: The Impact of Adjusting Analytical Methods and Correlation with Epidemiological Data.
Deborah J Baker et al. Foodborne Pathog Dis 2023 6 (6) 230-236 -
A CRISPR-enhanced metagenomic NGS test to improve pandemic preparedness.
Agnes P Chan et al. Cell Rep Methods 2023 6 (5) 100463 -
Rapid production and free distribution of a synthetic RNA material to support SARS-CoV-2 molecular diagnostic testing.
Megan H Cleveland et al. Biologicals 2023 5 101680 -
SARS-CoV-2 pandemics: An update of CRISPR in diagnosis and host-virus interaction studies.
Wen-Fang Tang et al. Biomed J 2023 2 (2) 100587
EVOLUTION / ECOLOGY / POPULATIONS
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Salmonella Typhi whole genome sequencing in Rwanda shows a diverse historical population with recent introduction of haplotype H58.
Jean Pierre Rutanga et al. PLoS Negl Trop Dis 2023 6 (6) e0011285 -
One Health compartment analysis of ESBL-producing Escherichia coli reveals multiple transmission events in a rural area of Madagascar.
Noellie Gay et al. J Antimicrob Chemother 2023 6 -
Comparison of Brucella abortus population structure based on genotyping methods with different levels of resolution.
Carine R Pereira et al. J Microbiol Methods 2023 6 106772 -
Fitness, growth and transmissibility of SARS-CoV-2 genetic variants.
Erik Volz et al. Nat Rev Genet 2023 6 -
Eastern Equine Encephalitis Virus Diversity in Massachusetts Patients, 1938-2020.
Rose M Langsjoen et al. Am J Trop Med Hyg 2023 6 -
Genomic characterization of the rotavirus G3P[8] strain in vaccinated children, reveals possible reassortment events between human and animal strains in Manhiça District, Mozambique.
Filomena Manjate et al. Front Microbiol 2023 6 1193094
PATHOGENICITY / ANTIMICROBIAL RESISTANCE
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Group B Streptococcus CRISPR1 Typing of Maternal, Fetal, and Neonatal Infectious Disease Isolates Highlights the Importance of CC1 in In Utero Fetal Death.
Brice Le Gallou et al. Microbiol Spectr 2023 6 e0522122 -
Prevalence and clonal diversity of carbapenem-resistant Klebsiella pneumoniae causing neonatal infections: A systematic review of 128 articles across 30 countries.
Ya Hu et al. PLoS Med 2023 6 (6) e1004233 -
Dynamics of the MRSA Population in a Chilean Hospital: a Phylogenomic Analysis (2000-2016).
José R W Martínez et al. Microbiol Spectr 2023 6 e0535122 -
Concordance between Genotypic and Phenotypic Drug-Resistant Profiles of Shigella Isolates from Taiyuan City, Shanxi Province, China, 2005 to 2016.
Mimi Kong et al. Microbiol Spectr 2023 5 (3) e0011923 -
Increase of Severe Pulmonary Infections in Adults Caused by M1 Streptococcus pyogenes, Central Scotland, UK.
Peter J B Davies et al. Emerg Infect Dis 2023 6 (8) -
Selection for insecticide resistance can promote Plasmodium falciparum infection in Anopheles.
Kelsey L Adams et al. PLoS Pathog 2023 6 (6) e1011448
DETECTION / DIAGNOSIS
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Genomic Surveillance for SARS-CoV-2 Variants: Circulation of Omicron Lineages - United States, January 2022-May 2023.
Kevin C Ma et al. MMWR Morb Mortal Wkly Rep 2023 6 (24) 651-656 -
Comprehensive mutation profiling from wastewater in southern Germany extends evidence of circulating SARS-CoV-2 diversity beyond mutations characteristic for Omicron.
Shelesh Agrawal et al. FEMS Microbes 2023 6 xtad006 -
Successful COVID-19 Contact Tracing of Crew from Two Cargo Ships at the Morowali Seaport, Indonesia.
Masdalina Pane et al. Disaster Med Public Health Prep 2023 6 e418
EPIDEMIOLOGY / OUTBREAKS / TRANSMISSION
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Enteric fever cluster identification in South Africa using genomic surveillance of Salmonella enterica serovar Typhi.
Anthony Marius Smith et al. Microb Genom 2023 6 (6) -
Investigation of a Multistate Outbreak of Listeria monocytogenes Infections Linked to Frozen Vegetables Produced at Individually Quick-Frozen Vegetable Manufacturing Facilities.
Asma Madad et al. J Food Prot 2023 6 (8) 100117 -
Genomic Epidemiology of a Severe Acute Respiratory Syndrome Coronavirus 2 Outbreak in a US Major League Soccer Club: Was It Travel Related?
Ludy R Carmola et al. Open Forum Infect Dis 2023 6 (6) ofad235 -
SARS-CoV-2 in mink farms in British Columbia, Canada: A report of two outbreaks in 2020-2021.
Adrianna Paiero et al. Can Commun Dis Rep 2023 6 (6) 274-281 -
Evaluating whole HIV-1 genome sequence for estimation of incidence and migration in a rural South African community.
Fabrícia F Nascimento et al. Wellcome Open Res 2023 6 174 -
CRISPR arrays as high-resolution markers to track microbial transmission during influenza infection.
Lingdi Zhang et al. Microbiome 2023 6 (1) 136
ANTIMICROBIALS / VACCINES / INTERVENTIONS
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Safety and immunogenicity of a phase 1/2 randomized clinical trial of a quadrivalent, mRNA-based seasonal influenza vaccine (mRNA-1010) in healthy adults: interim analysis.
Ivan T Lee et al. Nat Commun 2023 6 (1) 3631
HOST-MICROBE INTERACTIONS
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Comorbidity genetic risk and pathways impact SARS-CoV-2 infection outcomes.
Rachel K Jaros et al. Sci Rep 2023 6 (1) 9879 -
Vitamin D status, vitamin D receptor gene polymorphism, and haplotype in patients with cutaneous leishmaniasis: Correlation with susceptibility and parasite load index.
Doaa A Salem et al. PLoS Negl Trop Dis 2023 6 (6) e0011393 -
Uncovering the genomic basis of infection through co-genomic sequencing of hosts and parasites.
Eric Dexter et al. Mol Biol Evol 2023 6
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Disclaimer: Articles listed in the Advanced Molecular Detection Clips are selected by Public Health Genomics Branch to provide current awareness of the scientific literature and news. Inclusion in the clips does not necessarily represent the views of the Centers for Disease Control and Prevention nor does it imply endorsement of the article's methods or findings. CDC and DHHS assume no responsibility for the factual accuracy of the items presented. The selection, omission, or content of items does not imply any endorsement or other position taken by CDC or DHHS. Opinion, findings and conclusions expressed by the original authors of items included in the Clips, or persons quoted therein, are strictly their own and are in no way meant to represent the opinion or views of CDC or DHHS. References to publications, news sources, and non-CDC Websites are provided solely for informational purposes and do not imply endorsement by CDC or DHHS.
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